data_2J4R # _model_server_result.job_id Nlm866bWVCP3C6p8smxilg _model_server_result.datetime_utc '2025-09-04 21:36:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2j4r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1307}' # _entry.id 2J4R # _exptl.entry_id 2J4R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 603.16 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5',3'-TETRAPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2J4R _cell.length_a 70.46 _cell.length_b 70.46 _cell.length_c 223.71 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2J4R _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS monomeric 1 author_and_software_defined_assembly 1 PQS monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D 1 1 B,E 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H17 N5 O17 P4' _chem_comp.formula_weight 603.16 _chem_comp.id G4P _chem_comp.mon_nstd_flag . _chem_comp.name "GUANOSINE-5',3'-TETRAPHOSPHATE" _chem_comp.type 'rna linking' _chem_comp.pdbx_synonyms 'guanosine tetraphosphate;ppGpp' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B G4P doub 83 n n PB O2B G4P sing 84 n n PB O3B G4P sing 85 n n PB O3A G4P sing 86 n n O2B HOB2 G4P sing 87 n n O3B HOB3 G4P sing 88 n n O3A PA G4P sing 89 n n PA O1A G4P doub 90 n n PA O2A G4P sing 91 n n PA O5' G4P sing 92 n n O2A HOA2 G4P sing 93 n n O5' C5' G4P sing 94 n n C5' C4' G4P sing 95 n n C5' H5' G4P sing 96 n n C5' "H5''" G4P sing 97 n n C4' O4' G4P sing 98 n n C4' C3' G4P sing 99 n n C4' H4' G4P sing 100 n n O4' C1' G4P sing 101 n n C3' O3' G4P sing 102 n n C3' C2' G4P sing 103 n n C3' H3' G4P sing 104 n n O3' PC G4P sing 105 n n C2' O2' G4P sing 106 n n C2' C1' G4P sing 107 n n C2' H2' G4P sing 108 n n O2' HO2' G4P sing 109 n n C1' N9 G4P sing 110 n n C1' H1' G4P sing 111 n n N9 C8 G4P sing 112 n y N9 C4 G4P sing 113 n y C8 N7 G4P doub 114 n y C8 H8 G4P sing 115 n n N7 C5 G4P sing 116 n y C5 C6 G4P sing 117 n n C5 C4 G4P doub 118 n y C6 O6 G4P doub 119 n n C6 N1 G4P sing 120 n n N1 C2 G4P sing 121 n n N1 HN1 G4P sing 122 n n C2 N2 G4P sing 123 n n C2 N3 G4P doub 124 n n N2 HN21 G4P sing 125 n n N2 HN22 G4P sing 126 n n N3 C4 G4P sing 127 n n PC O1C G4P doub 128 n n PC O2C G4P sing 129 n n PC O3C G4P sing 130 n n O2C H2C G4P sing 131 n n O3C PD G4P sing 132 n n PD O1D G4P doub 133 n n PD O2D G4P sing 134 n n PD O3D G4P sing 135 n n O2D H2D G4P sing 136 n n O3D H3D G4P sing 137 n n # _atom_sites.entry_id 2J4R _atom_sites.fract_transf_matrix[1][1] 0.014192 _atom_sites.fract_transf_matrix[1][2] 0.008194 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016388 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00447 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 G4P A 1 1307 1307 G4P G4P . D 3 HOH A 1 2001 2001 HOH HOH . D 3 HOH A 2 2002 2002 HOH HOH . D 3 HOH A 3 2003 2003 HOH HOH . D 3 HOH A 4 2004 2004 HOH HOH . D 3 HOH A 5 2005 2005 HOH HOH . D 3 HOH A 6 2006 2006 HOH HOH . D 3 HOH A 7 2007 2007 HOH HOH . D 3 HOH A 8 2008 2008 HOH HOH . D 3 HOH A 9 2009 2009 HOH HOH . D 3 HOH A 10 2010 2010 HOH HOH . D 3 HOH A 11 2011 2011 HOH HOH . D 3 HOH A 12 2012 2012 HOH HOH . D 3 HOH A 13 2013 2013 HOH HOH . D 3 HOH A 14 2014 2014 HOH HOH . D 3 HOH A 15 2015 2015 HOH HOH . D 3 HOH A 16 2016 2016 HOH HOH . D 3 HOH A 17 2017 2017 HOH HOH . D 3 HOH A 18 2018 2018 HOH HOH . D 3 HOH A 19 2019 2019 HOH HOH . D 3 HOH A 20 2020 2020 HOH HOH . D 3 HOH A 21 2021 2021 HOH HOH . D 3 HOH A 22 2022 2022 HOH HOH . D 3 HOH A 23 2023 2023 HOH HOH . D 3 HOH A 24 2024 2024 HOH HOH . D 3 HOH A 25 2025 2025 HOH HOH . D 3 HOH A 26 2026 2026 HOH HOH . D 3 HOH A 27 2027 2027 HOH HOH . D 3 HOH A 28 2028 2028 HOH HOH . D 3 HOH A 29 2029 2029 HOH HOH . D 3 HOH A 30 2030 2030 HOH HOH . D 3 HOH A 31 2031 2031 HOH HOH . D 3 HOH A 32 2032 2032 HOH HOH . D 3 HOH A 33 2033 2033 HOH HOH . D 3 HOH A 34 2034 2034 HOH HOH . D 3 HOH A 35 2035 2035 HOH HOH . D 3 HOH A 36 2036 2036 HOH HOH . D 3 HOH A 37 2037 2037 HOH HOH . D 3 HOH A 38 2038 2038 HOH HOH . D 3 HOH A 39 2039 2039 HOH HOH . D 3 HOH A 40 2040 2040 HOH HOH . D 3 HOH A 41 2041 2041 HOH HOH . D 3 HOH A 42 2042 2042 HOH HOH . D 3 HOH A 43 2043 2043 HOH HOH . D 3 HOH A 44 2044 2044 HOH HOH . D 3 HOH A 45 2045 2045 HOH HOH . D 3 HOH A 46 2046 2046 HOH HOH . D 3 HOH A 47 2047 2047 HOH HOH . D 3 HOH A 48 2048 2048 HOH HOH . D 3 HOH A 49 2049 2049 HOH HOH . D 3 HOH A 50 2050 2050 HOH HOH . D 3 HOH A 51 2051 2051 HOH HOH . D 3 HOH A 52 2052 2052 HOH HOH . D 3 HOH A 53 2053 2053 HOH HOH . D 3 HOH A 54 2054 2054 HOH HOH . D 3 HOH A 55 2055 2055 HOH HOH . D 3 HOH A 56 2056 2056 HOH HOH . D 3 HOH A 57 2057 2057 HOH HOH . D 3 HOH A 58 2058 2058 HOH HOH . D 3 HOH A 59 2059 2059 HOH HOH . D 3 HOH A 60 2060 2060 HOH HOH . D 3 HOH A 61 2061 2061 HOH HOH . D 3 HOH A 62 2062 2062 HOH HOH . D 3 HOH A 63 2063 2063 HOH HOH . D 3 HOH A 64 2064 2064 HOH HOH . D 3 HOH A 65 2065 2065 HOH HOH . D 3 HOH A 66 2066 2066 HOH HOH . D 3 HOH A 67 2067 2067 HOH HOH . D 3 HOH A 68 2068 2068 HOH HOH . D 3 HOH A 69 2069 2069 HOH HOH . D 3 HOH A 70 2070 2070 HOH HOH . D 3 HOH A 71 2071 2071 HOH HOH . D 3 HOH A 72 2072 2072 HOH HOH . D 3 HOH A 73 2073 2073 HOH HOH . D 3 HOH A 74 2074 2074 HOH HOH . D 3 HOH A 75 2075 2075 HOH HOH . D 3 HOH A 76 2076 2076 HOH HOH . D 3 HOH A 77 2077 2077 HOH HOH . D 3 HOH A 78 2078 2078 HOH HOH . D 3 HOH A 79 2079 2079 HOH HOH . D 3 HOH A 80 2080 2080 HOH HOH . E 3 HOH B 1 2001 2001 HOH HOH . E 3 HOH B 2 2002 2002 HOH HOH . E 3 HOH B 3 2003 2003 HOH HOH . E 3 HOH B 4 2004 2004 HOH HOH . E 3 HOH B 5 2005 2005 HOH HOH . E 3 HOH B 6 2006 2006 HOH HOH . E 3 HOH B 7 2007 2007 HOH HOH . E 3 HOH B 8 2008 2008 HOH HOH . E 3 HOH B 9 2009 2009 HOH HOH . E 3 HOH B 10 2010 2010 HOH HOH . E 3 HOH B 11 2011 2011 HOH HOH . E 3 HOH B 12 2012 2012 HOH HOH . E 3 HOH B 13 2013 2013 HOH HOH . E 3 HOH B 14 2014 2014 HOH HOH . E 3 HOH B 15 2015 2015 HOH HOH . E 3 HOH B 16 2016 2016 HOH HOH . E 3 HOH B 17 2017 2017 HOH HOH . E 3 HOH B 18 2018 2018 HOH HOH . E 3 HOH B 19 2019 2019 HOH HOH . E 3 HOH B 20 2020 2020 HOH HOH . E 3 HOH B 21 2021 2021 HOH HOH . E 3 HOH B 22 2022 2022 HOH HOH . E 3 HOH B 23 2023 2023 HOH HOH . E 3 HOH B 24 2024 2024 HOH HOH . E 3 HOH B 25 2025 2025 HOH HOH . E 3 HOH B 26 2026 2026 HOH HOH . E 3 HOH B 27 2027 2027 HOH HOH . E 3 HOH B 28 2028 2028 HOH HOH . E 3 HOH B 29 2029 2029 HOH HOH . E 3 HOH B 30 2030 2030 HOH HOH . E 3 HOH B 31 2031 2031 HOH HOH . E 3 HOH B 32 2032 2032 HOH HOH . E 3 HOH B 33 2033 2033 HOH HOH . E 3 HOH B 34 2034 2034 HOH HOH . E 3 HOH B 35 2035 2035 HOH HOH . E 3 HOH B 36 2036 2036 HOH HOH . E 3 HOH B 37 2037 2037 HOH HOH . E 3 HOH B 38 2038 2038 HOH HOH . E 3 HOH B 39 2039 2039 HOH HOH . E 3 HOH B 40 2040 2040 HOH HOH . E 3 HOH B 41 2041 2041 HOH HOH . E 3 HOH B 42 2042 2042 HOH HOH . E 3 HOH B 43 2043 2043 HOH HOH . E 3 HOH B 44 2044 2044 HOH HOH . E 3 HOH B 45 2045 2045 HOH HOH . E 3 HOH B 46 2046 2046 HOH HOH . E 3 HOH B 47 2047 2047 HOH HOH . E 3 HOH B 48 2048 2048 HOH HOH . E 3 HOH B 49 2049 2049 HOH HOH . E 3 HOH B 50 2050 2050 HOH HOH . E 3 HOH B 51 2051 2051 HOH HOH . E 3 HOH B 52 2052 2052 HOH HOH . E 3 HOH B 53 2053 2053 HOH HOH . E 3 HOH B 54 2054 2054 HOH HOH . E 3 HOH B 55 2055 2055 HOH HOH . E 3 HOH B 56 2056 2056 HOH HOH . E 3 HOH B 57 2057 2057 HOH HOH . E 3 HOH B 58 2058 2058 HOH HOH . E 3 HOH B 59 2059 2059 HOH HOH . E 3 HOH B 60 2060 2060 HOH HOH . E 3 HOH B 61 2061 2061 HOH HOH . E 3 HOH B 62 2062 2062 HOH HOH . E 3 HOH B 63 2063 2063 HOH HOH . E 3 HOH B 64 2064 2064 HOH HOH . E 3 HOH B 65 2065 2065 HOH HOH . E 3 HOH B 66 2066 2066 HOH HOH . E 3 HOH B 67 2067 2067 HOH HOH . E 3 HOH B 68 2068 2068 HOH HOH . E 3 HOH B 69 2069 2069 HOH HOH . E 3 HOH B 70 2070 2070 HOH HOH . E 3 HOH B 71 2071 2071 HOH HOH . E 3 HOH B 72 2072 2072 HOH HOH . E 3 HOH B 73 2073 2073 HOH HOH . E 3 HOH B 74 2074 2074 HOH HOH . E 3 HOH B 75 2075 2075 HOH HOH . E 3 HOH B 76 2076 2076 HOH HOH . E 3 HOH B 77 2077 2077 HOH HOH . E 3 HOH B 78 2078 2078 HOH HOH . E 3 HOH B 79 2079 2079 HOH HOH . E 3 HOH B 80 2080 2080 HOH HOH . E 3 HOH B 81 2081 2081 HOH HOH . E 3 HOH B 82 2082 2082 HOH HOH . E 3 HOH B 83 2083 2083 HOH HOH . E 3 HOH B 84 2084 2084 HOH HOH . E 3 HOH B 85 2085 2085 HOH HOH . E 3 HOH B 86 2086 2086 HOH HOH . E 3 HOH B 87 2087 2087 HOH HOH . E 3 HOH B 88 2088 2088 HOH HOH . E 3 HOH B 89 2089 2089 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB G4P . . . C 2 -22.331 -10.837 -41.611 1 58.29 ? PB G4P 1307 A 1 HETATM 2 O O1B G4P . . . C 2 -23.781 -11.515 -41.781 1 58.72 ? O1B G4P 1307 A 1 HETATM 3 O O2B G4P . . . C 2 -21.943 -10.222 -43.047 1 57.99 ? O2B G4P 1307 A 1 HETATM 4 O O3B G4P . . . C 2 -21.321 -11.81 -41.14 1 60.16 ? O3B G4P 1307 A 1 HETATM 5 O O3A G4P . . . C 2 -22.517 -9.608 -40.587 1 59.9 ? O3A G4P 1307 A 1 HETATM 6 P PA G4P . . . C 2 -23.082 -8.169 -41.04 1 58.2 ? PA G4P 1307 A 1 HETATM 7 O O1A G4P . . . C 2 -22.45 -7.819 -42.478 1 57.92 ? O1A G4P 1307 A 1 HETATM 8 O O2A G4P . . . C 2 -22.772 -7.13 -40.032 1 58.28 ? O2A G4P 1307 A 1 HETATM 9 O O5' G4P . . . C 2 -24.657 -8.362 -41.3 1 58.39 ? O5' G4P 1307 A 1 HETATM 10 C C5' G4P . . . C 2 -25.436 -9.154 -40.402 1 60.66 ? C5' G4P 1307 A 1 HETATM 11 C C4' G4P . . . C 2 -25.166 -8.807 -38.936 1 59.73 ? C4' G4P 1307 A 1 HETATM 12 O O4' G4P . . . C 2 -25.477 -7.422 -38.706 1 60.26 ? O4' G4P 1307 A 1 HETATM 13 C C3' G4P . . . C 2 -26.262 -9.538 -38.162 1 61.02 ? C3' G4P 1307 A 1 HETATM 14 O O3' G4P . . . C 2 -26.106 -9.309 -36.759 1 61.53 ? O3' G4P 1307 A 1 HETATM 15 C C2' G4P . . . C 2 -27.446 -8.739 -38.703 1 60.87 ? C2' G4P 1307 A 1 HETATM 16 O O2' G4P . . . C 2 -28.587 -8.941 -37.865 1 63.5 ? O2' G4P 1307 A 1 HETATM 17 C C1' G4P . . . C 2 -26.901 -7.322 -38.517 1 60.71 ? C1' G4P 1307 A 1 HETATM 18 N N9 G4P . . . C 2 -27.515 -6.404 -39.502 1 60.9 ? N9 G4P 1307 A 1 HETATM 19 C C8 G4P . . . C 2 -27.344 -6.467 -40.821 1 60.98 ? C8 G4P 1307 A 1 HETATM 20 N N7 G4P . . . C 2 -27.945 -5.425 -41.393 1 62.34 ? N7 G4P 1307 A 1 HETATM 21 C C5 G4P . . . C 2 -28.502 -4.694 -40.436 1 61.52 ? C5 G4P 1307 A 1 HETATM 22 C C6 G4P . . . C 2 -29.251 -3.519 -40.452 1 61.01 ? C6 G4P 1307 A 1 HETATM 23 O O6 G4P . . . C 2 -29.49 -2.94 -41.508 1 59.47 ? O6 G4P 1307 A 1 HETATM 24 N N1 G4P . . . C 2 -29.715 -3.003 -39.236 1 62.77 ? N1 G4P 1307 A 1 HETATM 25 C C2 G4P . . . C 2 -29.416 -3.678 -38.048 1 63.73 ? C2 G4P 1307 A 1 HETATM 26 N N2 G4P . . . C 2 -29.861 -3.203 -36.887 1 63.71 ? N2 G4P 1307 A 1 HETATM 27 N N3 G4P . . . C 2 -28.683 -4.803 -38.072 1 63.42 ? N3 G4P 1307 A 1 HETATM 28 C C4 G4P . . . C 2 -28.228 -5.315 -39.224 1 61.71 ? C4 G4P 1307 A 1 HETATM 29 P PC G4P . . . C 2 -26.408 -10.517 -35.738 1 61.53 ? PC G4P 1307 A 1 HETATM 30 O O1C G4P . . . C 2 -25.134 -10.611 -34.756 1 61.58 ? O1C G4P 1307 A 1 HETATM 31 O O2C G4P . . . C 2 -27.683 -10.344 -35.007 1 62.25 ? O2C G4P 1307 A 1 HETATM 32 O O3C G4P . . . C 2 -26.381 -11.858 -36.627 1 61.2 ? O3C G4P 1307 A 1 HETATM 33 P PD G4P . . . C 2 -27.776 -12.506 -37.104 1 62.06 ? PD G4P 1307 A 1 HETATM 34 O O1D G4P . . . C 2 -29.049 -11.539 -37.269 1 64.03 ? O1D G4P 1307 A 1 HETATM 35 O O2D G4P . . . C 2 -27.98 -13.914 -36.348 1 64.19 ? O2D G4P 1307 A 1 HETATM 36 O O3D G4P . . . C 2 -27.507 -12.906 -38.504 1 60.81 ? O3D G4P 1307 A 1 # _model_server_stats.io_time_ms 74 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 36 #