data_2J4Y # _model_server_result.job_id gUAqpHoIog8XaagPVoopJg _model_server_result.datetime_utc '2024-11-16 13:00:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2j4y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1327}' # _entry.id 2J4Y # _exptl.entry_id 2J4Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2J4Y _cell.length_a 109.3 _cell.length_b 109.3 _cell.length_c 77.7 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2J4Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 3 A CYS 2 1_555 A SG CYS 283 A CYS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf2 A SG CYS 111 A CYS 110 1_555 A SG CYS 188 A CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf3 B SG CYS 3 B CYS 2 1_555 B SG CYS 283 B CYS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 B SG CYS 111 B CYS 110 1_555 B SG CYS 188 B CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? covale ? covale1 A C ACE 1 A ACE 0 1_555 A N MET 2 A MET 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale2 A ND2 ASN 16 A ASN 15 1_555 D C1 NAG . A NAG 1327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.484 ? covale ? covale3 A NZ LYS 297 A LYS 296 1_555 C C15 RET . A RET 1296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.308 ? covale ? covale4 B C ACE 1 B ACE 0 1_555 B N MET 2 B MET 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale5 B ND2 ASN 16 B ASN 15 1_555 F C1 NAG . B NAG 1327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.499 ? covale ? covale6 B NZ LYS 297 B LYS 296 1_555 E C15 RET . B RET 1296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.304 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 241 n n C1 O1 NAG sing 242 n n C1 O5 NAG sing 243 n n C1 H1 NAG sing 244 n n C2 C3 NAG sing 245 n n C2 N2 NAG sing 246 n n C2 H2 NAG sing 247 n n C3 C4 NAG sing 248 n n C3 O3 NAG sing 249 n n C3 H3 NAG sing 250 n n C4 C5 NAG sing 251 n n C4 O4 NAG sing 252 n n C4 H4 NAG sing 253 n n C5 C6 NAG sing 254 n n C5 O5 NAG sing 255 n n C5 H5 NAG sing 256 n n C6 O6 NAG sing 257 n n C6 H61 NAG sing 258 n n C6 H62 NAG sing 259 n n C7 C8 NAG sing 260 n n C7 N2 NAG sing 261 n n C7 O7 NAG doub 262 n n C8 H81 NAG sing 263 n n C8 H82 NAG sing 264 n n C8 H83 NAG sing 265 n n N2 HN2 NAG sing 266 n n O1 HO1 NAG sing 267 n n O3 HO3 NAG sing 268 n n O4 HO4 NAG sing 269 n n O6 HO6 NAG sing 270 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 2J4Y _atom_sites.fract_transf_matrix[1][1] 0.009149 _atom_sites.fract_transf_matrix[1][2] 0.005282 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010565 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01287 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 RET A 1 1296 1296 RET RET . D 3 NAG A 1 1327 1327 NAG NAG . E 2 RET B 1 1296 1296 RET RET . F 3 NAG B 1 1327 1327 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . D 3 -33.24 6.472 -11.341 1 64.03 ? C1 NAG 1327 A 1 HETATM 2 C C2 NAG . . . D 3 -34.094 5.247 -11.908 1 63.93 ? C2 NAG 1327 A 1 HETATM 3 C C3 NAG . . . D 3 -34.366 4.201 -10.714 1 63.5 ? C3 NAG 1327 A 1 HETATM 4 C C4 NAG . . . D 3 -33.091 3.891 -9.863 1 62.9 ? C4 NAG 1327 A 1 HETATM 5 C C5 NAG . . . D 3 -32.503 5.238 -9.375 1 62.2 ? C5 NAG 1327 A 1 HETATM 6 C C6 NAG . . . D 3 -31.424 5.15 -8.291 1 60.62 ? C6 NAG 1327 A 1 HETATM 7 C C7 NAG . . . D 3 -36.455 5.067 -12.703 1 65.27 ? C7 NAG 1327 A 1 HETATM 8 C C8 NAG . . . D 3 -37.702 5.909 -13.071 1 62.55 ? C8 NAG 1327 A 1 HETATM 9 N N2 NAG . . . D 3 -35.393 5.814 -12.342 1 64.5 ? N2 NAG 1327 A 1 HETATM 10 O O3 NAG . . . D 3 -34.933 2.935 -11.161 1 64.25 ? O3 NAG 1327 A 1 HETATM 11 O O4 NAG . . . D 3 -33.444 3.05 -8.768 1 63.47 ? O4 NAG 1327 A 1 HETATM 12 O O5 NAG . . . D 3 -32.061 6.068 -10.521 1 62.91 ? O5 NAG 1327 A 1 HETATM 13 O O6 NAG . . . D 3 -30.079 5.077 -8.792 1 58.23 ? O6 NAG 1327 A 1 HETATM 14 O O7 NAG . . . D 3 -36.445 3.82 -12.82 1 63.95 ? O7 NAG 1327 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #