data_2J50
#
_model_server_result.job_id            pvTRc1offp_XrtvECM_n3A 
_model_server_result.datetime_utc      '2024-10-09 23:20:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2j50 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1390}' 
#
_entry.id    2J50 
#
_exptl.entry_id    2J50 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              474.555 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-[(3E)-5-[(2R)-2-METHOXY-2-PHENYLACETYL]PYRROLO[3,4-C]PYRAZOL-3(5H)-YLIDENE]-4-(4-METHYLPIPERAZIN-1-YL)BENZAMIDE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2J50 
_cell.length_a            75.688 
_cell.length_b            86.782 
_cell.length_c            86.829 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2J50 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PQS monomeric 1 author_and_software_defined_assembly 1 
PQS monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D 1 1 
B,E,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
_chem_comp.formula           'C26 H30 N6 O3' 
_chem_comp.formula_weight    474.555 
_chem_comp.id                627 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-[(3E)-5-[(2R)-2-METHOXY-2-PHENYLACETYL]PYRROLO[3,4-C]PYRAZOL-3(5H)-YLIDENE]-4-(4-METHYLPIPERAZIN-1-YL)BENZAMIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     Danusertib;PHA-739358 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C15 627 sing 1 n n 
N1 C16 627 sing 2 n n 
N1 C25 627 sing 3 n n 
N2 N4 627 sing 4 n y 
N2 HN2 627 sing 5 n n 
N2 C13 627 sing 6 n y 
C3 N4 627 doub 7 n y 
C3 N5 627 sing 8 n n 
C3 C14 627 sing 9 n y 
N5 C6 627 sing 10 n n 
N5 HN5 627 sing 11 n n 
C6 C7 627 sing 12 n n 
C6 O8 627 doub 13 n n 
C7 C9 627 sing 14 n y 
C7 C12 627 doub 15 n y 
C9 C10 627 doub 16 n y 
C9 H9 627 sing 17 n n 
C10 C24 627 sing 18 n y 
C10 H10 627 sing 19 n n 
C11 C12 627 sing 20 n y 
C11 C24 627 doub 21 n y 
C11 H11 627 sing 22 n n 
C12 H12 627 sing 23 n n 
C13 C14 627 doub 24 n y 
C13 C16 627 sing 25 n n 
C14 C15 627 sing 26 n n 
C15 H15 627 sing 27 n n 
C15 H151 627 sing 28 n n 
C16 H16 627 sing 29 n n 
C16 H161 627 sing 30 n n 
N17 C18 627 sing 31 n n 
N17 C22 627 sing 32 n n 
N17 C24 627 sing 33 n n 
C18 C19 627 sing 34 n n 
C18 H181 627 sing 35 n n 
C18 H182 627 sing 36 n n 
C19 N20 627 sing 37 n n 
C19 H191 627 sing 38 n n 
C19 H192 627 sing 39 n n 
N20 C21 627 sing 40 n n 
N20 C23 627 sing 41 n n 
C21 C22 627 sing 42 n n 
C21 H211 627 sing 43 n n 
C21 H212 627 sing 44 n n 
C22 H221 627 sing 45 n n 
C22 H222 627 sing 46 n n 
C23 H231 627 sing 47 n n 
C23 H232 627 sing 48 n n 
C23 H233 627 sing 49 n n 
C25 O26 627 doub 50 n n 
C25 C20 627 sing 51 n n 
C27 C28 627 sing 52 n y 
C27 C29 627 doub 53 n y 
C27 C20 627 sing 54 n n 
C28 C31 627 doub 55 n y 
C28 H28 627 sing 56 n n 
C29 C33 627 sing 57 n y 
C29 H29 627 sing 58 n n 
C31 C35 627 sing 59 n y 
C31 H31 627 sing 60 n n 
C33 C35 627 doub 61 n y 
C33 H33 627 sing 62 n n 
C20 O34 627 sing 63 n n 
C20 H20 627 sing 64 n n 
C35 H35 627 sing 65 n n 
C36 O34 627 sing 66 n n 
C36 H361 627 sing 67 n n 
C36 H362 627 sing 68 n n 
C36 H363 627 sing 69 n n 
#
_atom_sites.entry_id                     2J50 
_atom_sites.fract_transf_matrix[1][1]    0.013212 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011523 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011517 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 627 A 1 1390 1390 627 627 . 
D 3 SO4 A 1 1391 1391 SO4 SO4 . 
E 2 627 B 1 1390 1390 627 627 . 
F 3 SO4 B 1 1391 1391 SO4 SO4 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 627 . . . C 2 26.175 36.703 24.373 1 51.21 ? N1 627 1390 A 1 
HETATM 2 N N2 627 . . . C 2 27.904 39.428 26.148 1 51.21 ? N2 627 1390 A 1 
HETATM 3 C C3 627 . . . C 2 25.805 39.818 26.357 1 51.21 ? C3 627 1390 A 1 
HETATM 4 N N4 627 . . . C 2 27.048 40.278 26.668 1 51.21 ? N4 627 1390 A 1 
HETATM 5 N N5 627 . . . C 2 24.732 40.539 26.792 1 51.21 ? N5 627 1390 A 1 
HETATM 6 C C6 627 . . . C 2 23.386 40.272 26.62 1 51.21 ? C6 627 1390 A 1 
HETATM 7 C C7 627 . . . C 2 22.397 41.273 27.197 1 51.21 ? C7 627 1390 A 1 
HETATM 8 O O8 627 . . . C 2 22.965 39.287 26.04 1 51.21 ? O8 627 1390 A 1 
HETATM 9 C C9 627 . . . C 2 22.786 42.443 27.893 1 51.21 ? C9 627 1390 A 1 
HETATM 10 C C10 627 . . . C 2 21.82 43.346 28.416 1 51.21 ? C10 627 1390 A 1 
HETATM 11 C C11 627 . . . C 2 20.027 41.922 27.548 1 51.21 ? C11 627 1390 A 1 
HETATM 12 C C12 627 . . . C 2 20.991 41.03 27.032 1 51.21 ? C12 627 1390 A 1 
HETATM 13 C C13 627 . . . C 2 27.307 38.442 25.513 1 51.21 ? C13 627 1390 A 1 
HETATM 14 C C14 627 . . . C 2 25.979 38.624 25.605 1 51.21 ? C14 627 1390 A 1 
HETATM 15 C C15 627 . . . C 2 25.159 37.588 24.928 1 51.21 ? C15 627 1390 A 1 
HETATM 16 C C16 627 . . . C 2 27.523 37.189 24.722 1 51.21 ? C16 627 1390 A 1 
HETATM 17 N N17 627 . . . C 2 19.35 44.015 28.791 1 51.21 ? N17 627 1390 A 1 
HETATM 18 C C18 627 . . . C 2 18.127 44.113 27.893 1 51.21 ? C18 627 1390 A 1 
HETATM 19 C C19 627 . . . C 2 17.801 45.468 27.186 1 51.21 ? C19 627 1390 A 1 
HETATM 20 N N20 627 . . . C 2 18.072 46.65 28.024 1 51.21 ? N20 627 1390 A 1 
HETATM 21 C C21 627 . . . C 2 19.473 46.641 28.458 1 51.21 ? C21 627 1390 A 1 
HETATM 22 C C22 627 . . . C 2 19.861 45.354 29.244 1 51.21 ? C22 627 1390 A 1 
HETATM 23 C C23 627 . . . C 2 17.748 47.891 27.314 1 51.21 ? C23 627 1390 A 1 
HETATM 24 C C24 627 . . . C 2 20.396 43.126 28.266 1 51.21 ? C24 627 1390 A 1 
HETATM 25 C C25 627 . . . C 2 25.994 35.527 23.583 1 51.21 ? C25 627 1390 A 1 
HETATM 26 O O26 627 . . . C 2 26.951 34.878 23.173 1 51.21 ? O26 627 1390 A 1 
HETATM 27 C C27 627 . . . C 2 23.878 36.159 22.263 1 51.21 ? C27 627 1390 A 1 
HETATM 28 C C28 627 . . . C 2 22.587 36.7 22.501 1 51.21 ? C28 627 1390 A 1 
HETATM 29 C C29 627 . . . C 2 24.616 36.64 21.135 1 51.21 ? C29 627 1390 A 1 
HETATM 30 C C31 627 . . . C 2 22.049 37.689 21.644 1 51.21 ? C31 627 1390 A 1 
HETATM 31 C C33 627 . . . C 2 24.085 37.624 20.28 1 51.21 ? C33 627 1390 A 1 
HETATM 32 C C20 627 . . . C 2 24.493 35.094 23.202 1 51.21 ? C20 627 1390 A 1 
HETATM 33 C C35 627 . . . C 2 22.796 38.158 20.529 1 51.21 ? C35 627 1390 A 1 
HETATM 34 C C36 627 . . . C 2 23.337 33.133 22.341 1 51.21 ? C36 627 1390 A 1 
HETATM 35 O O34 627 . . . C 2 24.581 33.79 22.556 1 51.21 ? O34 627 1390 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           294 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           35 
#