data_2J5T
#
_model_server_result.job_id            RKLLfd0nWbsB-ResZYb9ig 
_model_server_result.datetime_utc      '2025-07-18 06:07:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2j5t 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"GA","auth_seq_id":1372}' 
#
_entry.id    2J5T 
#
_exptl.entry_id    2J5T 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              147.129 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'GLUTAMIC ACID' 
_entity.pdbx_number_of_molecules    12 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          93.96 
_cell.angle_gamma         90 
_cell.entry_id            2J5T 
_cell.length_a            96.302 
_cell.length_b            124.108 
_cell.length_c            144.927 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2J5T 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 author_and_software_defined_assembly 1 
PISA tetrameric 4 author_and_software_defined_assembly 2 
PISA dimeric 2 software_defined_assembly 3 
PISA dimeric 2 software_defined_assembly 4 
PISA dimeric 2 software_defined_assembly 5 
PISA dimeric 2 software_defined_assembly 6 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,EB,FB,GB,HB 1 1 
E,F,G,H,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,IB,JB,KB,LB 2 1 
A,B,I,J,K,L,M,N,O,P,Q,R,S,T,U,EB,FB 3 1 
G,H,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,KB,LB 4 1 
E,F,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,IB,JB 5 1 
C,D,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GB,HB 6 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 I N N 
? 2 J N N 
? 2 P N N 
? 2 V N N 
? 2 AA N N 
? 2 BA N N 
? 2 GA N N 
? 2 HA N N 
? 2 OA N N 
? 2 PA N N 
? 2 UA N N 
? 2 VA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 D OD1 ASP 204 D ASP 204 1_555 CA MG MG . D MG 1369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? 
metalc ? metalc2 D O ASP 204 D ASP 204 1_555 CA MG MG . D MG 1369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? 
metalc ? metalc3 E OD1 ASP 204 E ASP 204 1_555 IA MG MG . E MG 1370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? 
metalc ? metalc4 E O ASP 204 E ASP 204 1_555 IA MG MG . E MG 1370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? 
#
_chem_comp.formula           'C5 H9 N O4' 
_chem_comp.formula_weight    147.129 
_chem_comp.id                GLU 
_chem_comp.mon_nstd_flag     y 
_chem_comp.name              'GLUTAMIC ACID' 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA GLU sing 102 n n 
N H GLU sing 103 n n 
N H2 GLU sing 104 n n 
CA C GLU sing 105 n n 
CA CB GLU sing 106 n n 
CA HA GLU sing 107 n n 
C O GLU doub 108 n n 
C OXT GLU sing 109 n n 
CB CG GLU sing 110 n n 
CB HB2 GLU sing 111 n n 
CB HB3 GLU sing 112 n n 
CG CD GLU sing 113 n n 
CG HG2 GLU sing 114 n n 
CG HG3 GLU sing 115 n n 
CD OE1 GLU doub 116 n n 
CD OE2 GLU sing 117 n n 
OE2 HE2 GLU sing 118 n n 
OXT HXT GLU sing 119 n n 
#
_atom_sites.entry_id                     2J5T 
_atom_sites.fract_transf_matrix[1][1]    0.010384 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000719 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008057 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006917 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 GLU A 1 1373 1373 GLU GLU . 
J 2 GLU A 1 1374 1374 GLU GLU . 
K 3 SO4 A 1 1372 1372 SO4 SO4 . 
L 4 CL A 1 1375 1375 CL CL . 
M 4 CL A 1 1376 1376 CL CL . 
N 4 CL A 1 1377 1377 CL CL . 
O 5 MG A 1 1378 1378 MG MG . 
P 2 GLU B 1 1371 1371 GLU GLU . 
Q 3 SO4 B 1 1370 1370 SO4 SO4 . 
R 4 CL B 1 1372 1372 CL CL . 
S 4 CL B 1 1373 1373 CL CL . 
T 4 CL B 1 1374 1374 CL CL . 
U 5 MG B 1 1375 1375 MG MG . 
V 2 GLU C 1 1371 1371 GLU GLU . 
W 3 SO4 C 1 1370 1370 SO4 SO4 . 
X 4 CL C 1 1372 1372 CL CL . 
Y 4 CL C 1 1373 1373 CL CL . 
Z 4 CL C 1 1374 1374 CL CL . 
AA 2 GLU D 1 1371 1371 GLU GLU . 
BA 2 GLU D 1 1372 1372 GLU GLU . 
CA 5 MG D 1 1369 1369 MG MG . 
DA 3 SO4 D 1 1370 1370 SO4 SO4 . 
EA 4 CL D 1 1373 1373 CL CL . 
FA 4 CL D 1 1374 1374 CL CL . 
GA 2 GLU E 1 1372 1372 GLU GLU . 
HA 2 GLU E 1 1373 1373 GLU GLU . 
IA 5 MG E 1 1370 1370 MG MG . 
JA 3 SO4 E 1 1371 1371 SO4 SO4 . 
KA 4 CL E 1 1374 1374 CL CL . 
LA 4 CL E 1 1375 1375 CL CL . 
MA 4 CL E 1 1376 1376 CL CL . 
NA 5 MG E 1 1377 1377 MG MG . 
OA 2 GLU F 1 1371 1371 GLU GLU . 
PA 2 GLU F 1 1372 1372 GLU GLU . 
QA 3 SO4 F 1 1370 1370 SO4 SO4 . 
RA 4 CL F 1 1373 1373 CL CL . 
SA 4 CL F 1 1374 1374 CL CL . 
TA 5 MG F 1 1375 1375 MG MG . 
UA 2 GLU G 1 1371 1371 GLU GLU . 
VA 2 GLU G 1 1372 1372 GLU GLU . 
WA 3 SO4 G 1 1370 1370 SO4 SO4 . 
XA 4 CL G 1 1373 1373 CL CL . 
YA 4 CL G 1 1374 1374 CL CL . 
ZA 4 CL G 1 1375 1375 CL CL . 
AB 5 MG G 1 1376 1376 MG MG . 
BB 3 SO4 H 1 1369 1369 SO4 SO4 . 
CB 4 CL H 1 1370 1370 CL CL . 
DB 5 MG H 1 1371 1371 MG MG . 
EB 6 HOH A 1 2001 2001 HOH HOH . 
EB 6 HOH A 2 2002 2002 HOH HOH . 
EB 6 HOH A 3 2003 2003 HOH HOH . 
EB 6 HOH A 4 2004 2004 HOH HOH . 
EB 6 HOH A 5 2005 2005 HOH HOH . 
EB 6 HOH A 6 2006 2006 HOH HOH . 
EB 6 HOH A 7 2007 2007 HOH HOH . 
EB 6 HOH A 8 2008 2008 HOH HOH . 
EB 6 HOH A 9 2009 2009 HOH HOH . 
EB 6 HOH A 10 2010 2010 HOH HOH . 
EB 6 HOH A 11 2011 2011 HOH HOH . 
EB 6 HOH A 12 2012 2012 HOH HOH . 
EB 6 HOH A 13 2013 2013 HOH HOH . 
EB 6 HOH A 14 2014 2014 HOH HOH . 
EB 6 HOH A 15 2015 2015 HOH HOH . 
EB 6 HOH A 16 2016 2016 HOH HOH . 
EB 6 HOH A 17 2017 2017 HOH HOH . 
FB 6 HOH B 1 2001 2001 HOH HOH . 
FB 6 HOH B 2 2002 2002 HOH HOH . 
FB 6 HOH B 3 2003 2003 HOH HOH . 
FB 6 HOH B 4 2004 2004 HOH HOH . 
FB 6 HOH B 5 2005 2005 HOH HOH . 
FB 6 HOH B 6 2006 2006 HOH HOH . 
FB 6 HOH B 7 2007 2007 HOH HOH . 
FB 6 HOH B 8 2008 2008 HOH HOH . 
GB 6 HOH C 1 2001 2001 HOH HOH . 
GB 6 HOH C 2 2002 2002 HOH HOH . 
GB 6 HOH C 3 2003 2003 HOH HOH . 
GB 6 HOH C 4 2004 2004 HOH HOH . 
GB 6 HOH C 5 2005 2005 HOH HOH . 
GB 6 HOH C 6 2006 2006 HOH HOH . 
GB 6 HOH C 7 2007 2007 HOH HOH . 
GB 6 HOH C 8 2008 2008 HOH HOH . 
GB 6 HOH C 9 2009 2009 HOH HOH . 
GB 6 HOH C 10 2010 2010 HOH HOH . 
HB 6 HOH D 1 2001 2001 HOH HOH . 
HB 6 HOH D 2 2002 2002 HOH HOH . 
HB 6 HOH D 3 2003 2003 HOH HOH . 
HB 6 HOH D 4 2004 2004 HOH HOH . 
HB 6 HOH D 5 2005 2005 HOH HOH . 
HB 6 HOH D 6 2006 2006 HOH HOH . 
HB 6 HOH D 7 2007 2007 HOH HOH . 
HB 6 HOH D 8 2008 2008 HOH HOH . 
HB 6 HOH D 9 2009 2009 HOH HOH . 
HB 6 HOH D 10 2010 2010 HOH HOH . 
HB 6 HOH D 11 2011 2011 HOH HOH . 
HB 6 HOH D 12 2012 2012 HOH HOH . 
HB 6 HOH D 13 2013 2013 HOH HOH . 
HB 6 HOH D 14 2014 2014 HOH HOH . 
IB 6 HOH E 1 2001 2001 HOH HOH . 
IB 6 HOH E 2 2002 2002 HOH HOH . 
IB 6 HOH E 3 2003 2003 HOH HOH . 
IB 6 HOH E 4 2004 2004 HOH HOH . 
IB 6 HOH E 5 2005 2005 HOH HOH . 
IB 6 HOH E 6 2006 2006 HOH HOH . 
IB 6 HOH E 7 2007 2007 HOH HOH . 
IB 6 HOH E 8 2008 2008 HOH HOH . 
IB 6 HOH E 9 2009 2009 HOH HOH . 
IB 6 HOH E 10 2010 2010 HOH HOH . 
IB 6 HOH E 11 2011 2011 HOH HOH . 
IB 6 HOH E 12 2012 2012 HOH HOH . 
IB 6 HOH E 13 2013 2013 HOH HOH . 
IB 6 HOH E 14 2014 2014 HOH HOH . 
JB 6 HOH F 1 2001 2001 HOH HOH . 
JB 6 HOH F 2 2002 2002 HOH HOH . 
JB 6 HOH F 3 2003 2003 HOH HOH . 
JB 6 HOH F 4 2004 2004 HOH HOH . 
JB 6 HOH F 5 2005 2005 HOH HOH . 
JB 6 HOH F 6 2006 2006 HOH HOH . 
JB 6 HOH F 7 2007 2007 HOH HOH . 
JB 6 HOH F 8 2008 2008 HOH HOH . 
JB 6 HOH F 9 2009 2009 HOH HOH . 
JB 6 HOH F 10 2010 2010 HOH HOH . 
JB 6 HOH F 11 2011 2011 HOH HOH . 
JB 6 HOH F 12 2012 2012 HOH HOH . 
KB 6 HOH G 1 2001 2001 HOH HOH . 
KB 6 HOH G 2 2002 2002 HOH HOH . 
KB 6 HOH G 3 2003 2003 HOH HOH . 
KB 6 HOH G 4 2004 2004 HOH HOH . 
KB 6 HOH G 5 2005 2005 HOH HOH . 
KB 6 HOH G 6 2006 2006 HOH HOH . 
KB 6 HOH G 7 2007 2007 HOH HOH . 
KB 6 HOH G 8 2008 2008 HOH HOH . 
KB 6 HOH G 9 2009 2009 HOH HOH . 
KB 6 HOH G 10 2010 2010 HOH HOH . 
KB 6 HOH G 11 2011 2011 HOH HOH . 
KB 6 HOH G 12 2012 2012 HOH HOH . 
KB 6 HOH G 13 2013 2013 HOH HOH . 
LB 6 HOH H 1 2001 2001 HOH HOH . 
LB 6 HOH H 2 2002 2002 HOH HOH . 
LB 6 HOH H 3 2003 2003 HOH HOH . 
LB 6 HOH H 4 2004 2004 HOH HOH . 
LB 6 HOH H 5 2005 2005 HOH HOH . 
LB 6 HOH H 6 2006 2006 HOH HOH . 
LB 6 HOH H 7 2007 2007 HOH HOH . 
LB 6 HOH H 8 2008 2008 HOH HOH . 
LB 6 HOH H 9 2009 2009 HOH HOH . 
LB 6 HOH H 10 2010 2010 HOH HOH . 
LB 6 HOH H 11 2011 2011 HOH HOH . 
LB 6 HOH H 12 2012 2012 HOH HOH . 
LB 6 HOH H 13 2013 2013 HOH HOH . 
LB 6 HOH H 14 2014 2014 HOH HOH . 
LB 6 HOH H 15 2015 2015 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N GLU . . . GA 2 -82.436 29.099 83.926 1 29.61 ? N GLU 1372 E 1 
HETATM 2 C CA GLU . . . GA 2 -82.378 29.407 85.347 1 30.18 ? CA GLU 1372 E 1 
HETATM 3 C C GLU . . . GA 2 -80.967 29.82 85.755 1 30.02 ? C GLU 1372 E 1 
HETATM 4 O O GLU . . . GA 2 -80.587 29.669 86.945 1 29.74 ? O GLU 1372 E 1 
HETATM 5 C CB GLU . . . GA 2 -82.875 28.187 86.141 1 30.35 ? CB GLU 1372 E 1 
HETATM 6 C CG GLU . . . GA 2 -84.294 28.321 86.686 1 30.83 ? CG GLU 1372 E 1 
HETATM 7 C CD GLU . . . GA 2 -85.325 28.228 85.588 1 31.75 ? CD GLU 1372 E 1 
HETATM 8 O OE1 GLU . . . GA 2 -85.003 27.715 84.494 1 32.44 ? OE1 GLU 1372 E 1 
HETATM 9 O OE2 GLU . . . GA 2 -86.469 28.68 85.817 1 31.6 ? OE2 GLU 1372 E 1 
HETATM 10 O OXT GLU . . . GA 2 -80.211 30.324 84.89 1 29.69 ? OXT GLU 1372 E 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    170 
_model_server_stats.query_time_ms           456 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           10 
#