data_2J60 # _model_server_result.job_id m9Q0fW-7bOtejDgpYiq16A _model_server_result.datetime_utc '2024-11-23 03:39:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2j60 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1278}' # _entry.id 2J60 # _exptl.entry_id 2J60 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2J60 _cell.length_a 62 _cell.length_b 62 _cell.length_c 346.8 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2J60 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS monomeric 1 author_and_software_defined_assembly 1 PQS monomeric 1 author_and_software_defined_assembly 2 PQS monomeric 1 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,J 1 1 B,G,H,K 2 1 C,I,L 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 H N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 8 A CYS 63 1_555 A SG CYS 32 A CYS 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf2 A SG CYS 15 A CYS 70 1_555 A SG CYS 43 A CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? disulf ? disulf3 A SG CYS 167 A CYS 222 1_555 A SG CYS 180 A CYS 235 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf4 B SG CYS 15 B CYS 70 1_555 B SG CYS 43 B CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? disulf ? disulf5 B SG CYS 167 B CYS 222 1_555 B SG CYS 180 B CYS 235 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf6 C SG CYS 15 C CYS 70 1_555 C SG CYS 43 C CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf7 C SG CYS 167 C CYS 222 1_555 C SG CYS 180 C CYS 235 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc1 A OD1 ASP 159 A ASP 214 1_555 E CA CA . A CA 1278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? metalc ? metalc2 A OD2 ASP 159 A ASP 214 1_555 E CA CA . A CA 1278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? metalc ? metalc3 A OD1 ASP 161 A ASP 216 1_555 E CA CA . A CA 1278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc4 A O SER 163 A SER 218 1_555 E CA CA . A CA 1278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.497 ? metalc ? metalc5 A O SER 165 A SER 220 1_555 E CA CA . A CA 1278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.507 ? metalc ? metalc6 E CA CA . A CA 1278 1_555 J O HOH . A HOH 2057 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc7 E CA CA . A CA 1278 1_555 J O HOH . A HOH 2058 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? metalc ? metalc8 B OD2 ASP 159 B ASP 214 1_555 H CA CA . B CA 1278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc9 B OD1 ASP 159 B ASP 214 1_555 H CA CA . B CA 1278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.489 ? metalc ? metalc10 B OD1 ASP 161 B ASP 216 1_555 H CA CA . B CA 1278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc11 B O SER 163 B SER 218 1_555 H CA CA . B CA 1278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? metalc ? metalc12 B O SER 165 B SER 220 1_555 H CA CA . B CA 1278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc13 H CA CA . B CA 1278 1_555 K O HOH . B HOH 2057 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc14 H CA CA . B CA 1278 1_555 K O HOH . B HOH 2060 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc15 C OD2 ASP 159 C ASP 214 1_555 I CA CA . C CA 1277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.509 ? metalc ? metalc16 C OD1 ASP 159 C ASP 214 1_555 I CA CA . C CA 1277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.924 ? metalc ? metalc17 C OD1 ASP 161 C ASP 216 1_555 I CA CA . C CA 1277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc18 C OD2 ASP 161 C ASP 216 1_555 I CA CA . C CA 1277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.31 ? metalc ? metalc19 C O SER 163 C SER 218 1_555 I CA CA . C CA 1277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.231 ? metalc ? metalc20 C O SER 165 C SER 220 1_555 I CA CA . C CA 1277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc21 I CA CA . C CA 1277 1_555 L O HOH . C HOH 2033 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2J60 _atom_sites.fract_transf_matrix[1][1] 0.016129 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016129 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002884 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 ABE A 1 1277 1277 ABE ABE . E 3 CA A 1 1278 1278 CA CA . F 4 ACT A 1 1279 1279 ACT ACT . G 2 ABE B 1 1277 1277 ABE ABE . H 3 CA B 1 1278 1278 CA CA . I 3 CA C 1 1277 1277 CA CA . J 5 HOH A 1 2001 2001 HOH HOH . J 5 HOH A 2 2002 2002 HOH HOH . J 5 HOH A 3 2003 2003 HOH HOH . J 5 HOH A 4 2004 2004 HOH HOH . J 5 HOH A 5 2005 2005 HOH HOH . J 5 HOH A 6 2006 2006 HOH HOH . J 5 HOH A 7 2007 2007 HOH HOH . J 5 HOH A 8 2008 2008 HOH HOH . J 5 HOH A 9 2009 2009 HOH HOH . J 5 HOH A 10 2010 2010 HOH HOH . J 5 HOH A 11 2011 2011 HOH HOH . J 5 HOH A 12 2012 2012 HOH HOH . J 5 HOH A 13 2013 2013 HOH HOH . J 5 HOH A 14 2014 2014 HOH HOH . J 5 HOH A 15 2015 2015 HOH HOH . J 5 HOH A 16 2016 2016 HOH HOH . J 5 HOH A 17 2017 2017 HOH HOH . J 5 HOH A 18 2018 2018 HOH HOH . J 5 HOH A 19 2019 2019 HOH HOH . J 5 HOH A 20 2020 2020 HOH HOH . J 5 HOH A 21 2021 2021 HOH HOH . J 5 HOH A 22 2022 2022 HOH HOH . J 5 HOH A 23 2023 2023 HOH HOH . J 5 HOH A 24 2024 2024 HOH HOH . J 5 HOH A 25 2025 2025 HOH HOH . J 5 HOH A 26 2026 2026 HOH HOH . J 5 HOH A 27 2027 2027 HOH HOH . J 5 HOH A 28 2028 2028 HOH HOH . J 5 HOH A 29 2029 2029 HOH HOH . J 5 HOH A 30 2030 2030 HOH HOH . J 5 HOH A 31 2031 2031 HOH HOH . J 5 HOH A 32 2032 2032 HOH HOH . J 5 HOH A 33 2033 2033 HOH HOH . J 5 HOH A 34 2034 2034 HOH HOH . J 5 HOH A 35 2035 2035 HOH HOH . J 5 HOH A 36 2036 2036 HOH HOH . J 5 HOH A 37 2037 2037 HOH HOH . J 5 HOH A 38 2038 2038 HOH HOH . J 5 HOH A 39 2039 2039 HOH HOH . J 5 HOH A 40 2040 2040 HOH HOH . J 5 HOH A 41 2041 2041 HOH HOH . J 5 HOH A 42 2042 2042 HOH HOH . J 5 HOH A 43 2043 2043 HOH HOH . J 5 HOH A 44 2044 2044 HOH HOH . J 5 HOH A 45 2045 2045 HOH HOH . J 5 HOH A 46 2046 2046 HOH HOH . J 5 HOH A 47 2047 2047 HOH HOH . J 5 HOH A 48 2048 2048 HOH HOH . J 5 HOH A 49 2049 2049 HOH HOH . J 5 HOH A 50 2050 2050 HOH HOH . J 5 HOH A 51 2051 2051 HOH HOH . J 5 HOH A 52 2052 2052 HOH HOH . J 5 HOH A 53 2053 2053 HOH HOH . J 5 HOH A 54 2054 2054 HOH HOH . J 5 HOH A 55 2055 2055 HOH HOH . J 5 HOH A 56 2056 2056 HOH HOH . J 5 HOH A 57 2057 2057 HOH HOH . J 5 HOH A 58 2058 2058 HOH HOH . J 5 HOH A 59 2059 2059 HOH HOH . J 5 HOH A 60 2060 2060 HOH HOH . J 5 HOH A 61 2061 2061 HOH HOH . J 5 HOH A 62 2062 2062 HOH HOH . J 5 HOH A 63 2063 2063 HOH HOH . J 5 HOH A 64 2064 2064 HOH HOH . J 5 HOH A 65 2065 2065 HOH HOH . J 5 HOH A 66 2066 2066 HOH HOH . J 5 HOH A 67 2067 2067 HOH HOH . J 5 HOH A 68 2068 2068 HOH HOH . J 5 HOH A 69 2069 2069 HOH HOH . J 5 HOH A 70 2070 2070 HOH HOH . J 5 HOH A 71 2071 2071 HOH HOH . J 5 HOH A 72 2072 2072 HOH HOH . J 5 HOH A 73 2073 2073 HOH HOH . K 5 HOH B 1 2001 2001 HOH HOH . K 5 HOH B 2 2002 2002 HOH HOH . K 5 HOH B 3 2003 2003 HOH HOH . K 5 HOH B 4 2004 2004 HOH HOH . K 5 HOH B 5 2005 2005 HOH HOH . K 5 HOH B 6 2006 2006 HOH HOH . K 5 HOH B 7 2007 2007 HOH HOH . K 5 HOH B 8 2008 2008 HOH HOH . K 5 HOH B 9 2009 2009 HOH HOH . K 5 HOH B 10 2010 2010 HOH HOH . K 5 HOH B 11 2011 2011 HOH HOH . K 5 HOH B 12 2012 2012 HOH HOH . K 5 HOH B 13 2013 2013 HOH HOH . K 5 HOH B 14 2014 2014 HOH HOH . K 5 HOH B 15 2015 2015 HOH HOH . K 5 HOH B 16 2016 2016 HOH HOH . K 5 HOH B 17 2017 2017 HOH HOH . K 5 HOH B 18 2018 2018 HOH HOH . K 5 HOH B 19 2019 2019 HOH HOH . K 5 HOH B 20 2020 2020 HOH HOH . K 5 HOH B 21 2021 2021 HOH HOH . K 5 HOH B 22 2022 2022 HOH HOH . K 5 HOH B 23 2023 2023 HOH HOH . K 5 HOH B 24 2024 2024 HOH HOH . K 5 HOH B 25 2025 2025 HOH HOH . K 5 HOH B 26 2026 2026 HOH HOH . K 5 HOH B 27 2027 2027 HOH HOH . K 5 HOH B 28 2028 2028 HOH HOH . K 5 HOH B 29 2029 2029 HOH HOH . K 5 HOH B 30 2030 2030 HOH HOH . K 5 HOH B 31 2031 2031 HOH HOH . K 5 HOH B 32 2032 2032 HOH HOH . K 5 HOH B 33 2033 2033 HOH HOH . K 5 HOH B 34 2034 2034 HOH HOH . K 5 HOH B 35 2035 2035 HOH HOH . K 5 HOH B 36 2036 2036 HOH HOH . K 5 HOH B 37 2037 2037 HOH HOH . K 5 HOH B 38 2038 2038 HOH HOH . K 5 HOH B 39 2039 2039 HOH HOH . K 5 HOH B 40 2040 2040 HOH HOH . K 5 HOH B 41 2041 2041 HOH HOH . K 5 HOH B 42 2042 2042 HOH HOH . K 5 HOH B 43 2043 2043 HOH HOH . K 5 HOH B 44 2044 2044 HOH HOH . K 5 HOH B 45 2045 2045 HOH HOH . K 5 HOH B 46 2046 2046 HOH HOH . K 5 HOH B 47 2047 2047 HOH HOH . K 5 HOH B 48 2048 2048 HOH HOH . K 5 HOH B 49 2049 2049 HOH HOH . K 5 HOH B 50 2050 2050 HOH HOH . K 5 HOH B 51 2051 2051 HOH HOH . K 5 HOH B 52 2052 2052 HOH HOH . K 5 HOH B 53 2053 2053 HOH HOH . K 5 HOH B 54 2054 2054 HOH HOH . K 5 HOH B 55 2055 2055 HOH HOH . K 5 HOH B 56 2056 2056 HOH HOH . K 5 HOH B 57 2057 2057 HOH HOH . K 5 HOH B 58 2058 2058 HOH HOH . K 5 HOH B 59 2059 2059 HOH HOH . K 5 HOH B 60 2060 2060 HOH HOH . K 5 HOH B 61 2061 2061 HOH HOH . K 5 HOH B 62 2062 2062 HOH HOH . K 5 HOH B 63 2063 2063 HOH HOH . K 5 HOH B 64 2064 2064 HOH HOH . K 5 HOH B 65 2065 2065 HOH HOH . K 5 HOH B 66 2066 2066 HOH HOH . K 5 HOH B 67 2067 2067 HOH HOH . K 5 HOH B 68 2068 2068 HOH HOH . K 5 HOH B 69 2069 2069 HOH HOH . K 5 HOH B 70 2070 2070 HOH HOH . K 5 HOH B 71 2071 2071 HOH HOH . K 5 HOH B 72 2072 2072 HOH HOH . K 5 HOH B 73 2073 2073 HOH HOH . K 5 HOH B 74 2074 2074 HOH HOH . K 5 HOH B 75 2075 2075 HOH HOH . K 5 HOH B 76 2076 2076 HOH HOH . K 5 HOH B 77 2077 2077 HOH HOH . K 5 HOH B 78 2078 2078 HOH HOH . K 5 HOH B 79 2079 2079 HOH HOH . K 5 HOH B 80 2080 2080 HOH HOH . K 5 HOH B 81 2081 2081 HOH HOH . K 5 HOH B 82 2082 2082 HOH HOH . K 5 HOH B 83 2083 2083 HOH HOH . K 5 HOH B 84 2084 2084 HOH HOH . K 5 HOH B 85 2085 2085 HOH HOH . K 5 HOH B 86 2086 2086 HOH HOH . K 5 HOH B 87 2087 2087 HOH HOH . K 5 HOH B 88 2088 2088 HOH HOH . L 5 HOH C 1 2001 2001 HOH HOH . L 5 HOH C 2 2002 2002 HOH HOH . L 5 HOH C 3 2003 2003 HOH HOH . L 5 HOH C 4 2004 2004 HOH HOH . L 5 HOH C 5 2005 2005 HOH HOH . L 5 HOH C 6 2006 2006 HOH HOH . L 5 HOH C 7 2007 2007 HOH HOH . L 5 HOH C 8 2008 2008 HOH HOH . L 5 HOH C 9 2009 2009 HOH HOH . L 5 HOH C 10 2010 2010 HOH HOH . L 5 HOH C 11 2011 2011 HOH HOH . L 5 HOH C 12 2012 2012 HOH HOH . L 5 HOH C 13 2013 2013 HOH HOH . L 5 HOH C 14 2014 2014 HOH HOH . L 5 HOH C 15 2015 2015 HOH HOH . L 5 HOH C 16 2016 2016 HOH HOH . L 5 HOH C 17 2017 2017 HOH HOH . L 5 HOH C 18 2018 2018 HOH HOH . L 5 HOH C 19 2019 2019 HOH HOH . L 5 HOH C 20 2020 2020 HOH HOH . L 5 HOH C 21 2021 2021 HOH HOH . L 5 HOH C 22 2022 2022 HOH HOH . L 5 HOH C 23 2023 2023 HOH HOH . L 5 HOH C 24 2024 2024 HOH HOH . L 5 HOH C 25 2025 2025 HOH HOH . L 5 HOH C 26 2026 2026 HOH HOH . L 5 HOH C 27 2027 2027 HOH HOH . L 5 HOH C 28 2028 2028 HOH HOH . L 5 HOH C 29 2029 2029 HOH HOH . L 5 HOH C 30 2030 2030 HOH HOH . L 5 HOH C 31 2031 2031 HOH HOH . L 5 HOH C 32 2032 2032 HOH HOH . L 5 HOH C 33 2033 2033 HOH HOH . L 5 HOH C 34 2034 2034 HOH HOH . L 5 HOH C 35 2035 2035 HOH HOH . L 5 HOH C 36 2036 2036 HOH HOH . L 5 HOH C 37 2037 2037 HOH HOH . L 5 HOH C 38 2038 2038 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 3 _atom_site.Cartn_x -34.673 _atom_site.Cartn_y 6.994 _atom_site.Cartn_z -25.564 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 23.45 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 1278 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #