data_2J61 # _model_server_result.job_id MtLcUi1jCb9OGwbvdXjpLA _model_server_result.datetime_utc '2024-11-26 18:07:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2j61 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1289}' # _entry.id 2J61 # _exptl.entry_id 2J61 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2J61 _cell.length_a 79.591 _cell.length_b 79.591 _cell.length_c 172.04 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2J61 _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 63' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS monomeric 1 author_and_software_defined_assembly 1 PQS monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,F 1 1 B,E,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 3 A CYS 73 1_555 A SG CYS 31 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf2 A SG CYS 10 A CYS 80 1_555 A SG CYS 38 A CYS 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? disulf ? disulf3 A SG CYS 162 A CYS 232 1_555 A SG CYS 175 A CYS 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf4 B SG CYS 3 B CYS 73 1_555 B SG CYS 31 B CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? disulf ? disulf5 B SG CYS 10 B CYS 80 1_555 B SG CYS 38 B CYS 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? disulf ? disulf6 B SG CYS 162 B CYS 232 1_555 B SG CYS 175 B CYS 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 A NZ LYS 214 A LYS 284 1_555 D O4 NAG . A NAG 1290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc1 A OD2 ASP 154 A ASP 224 1_555 C CA CA . A CA 1289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc2 A OD1 ASP 154 A ASP 224 1_555 C CA CA . A CA 1289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.763 ? metalc ? metalc3 A O ASP 156 A ASP 226 1_555 C CA CA . A CA 1289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.358 ? metalc ? metalc4 A OD2 ASP 156 A ASP 226 1_555 C CA CA . A CA 1289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc5 A OD1 ASP 156 A ASP 226 1_555 C CA CA . A CA 1289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.369 ? metalc ? metalc6 A O ASN 158 A ASN 228 1_555 C CA CA . A CA 1289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.634 ? metalc ? metalc7 A O GLY 160 A GLY 230 1_555 C CA CA . A CA 1289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.489 ? metalc ? metalc8 C CA CA . A CA 1289 1_555 F O HOH . A HOH 2023 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.231 ? metalc ? metalc9 B OD2 ASP 154 B ASP 224 1_555 E CA CA . B CA 1289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.231 ? metalc ? metalc10 B OD1 ASP 154 B ASP 224 1_555 E CA CA . B CA 1289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.895 ? metalc ? metalc11 B OD2 ASP 156 B ASP 226 1_555 E CA CA . B CA 1289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.678 ? metalc ? metalc12 B O ASN 158 B ASN 228 1_555 E CA CA . B CA 1289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? metalc ? metalc13 E CA CA . B CA 1289 1_555 G O HOH . B HOH 2024 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2J61 _atom_sites.fract_transf_matrix[1][1] 0.012564 _atom_sites.fract_transf_matrix[1][2] 0.007254 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014508 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005813 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA A 1 1289 1289 CA CA . D 4 NAG A 1 1290 1290 NAG NAG . E 3 CA B 1 1289 1289 CA CA . F 5 HOH A 1 2001 2001 HOH HOH . F 5 HOH A 2 2002 2002 HOH HOH . F 5 HOH A 3 2003 2003 HOH HOH . F 5 HOH A 4 2004 2004 HOH HOH . F 5 HOH A 5 2005 2005 HOH HOH . F 5 HOH A 6 2006 2006 HOH HOH . F 5 HOH A 7 2007 2007 HOH HOH . F 5 HOH A 8 2008 2008 HOH HOH . F 5 HOH A 9 2009 2009 HOH HOH . F 5 HOH A 10 2010 2010 HOH HOH . F 5 HOH A 11 2011 2011 HOH HOH . F 5 HOH A 12 2012 2012 HOH HOH . F 5 HOH A 13 2013 2013 HOH HOH . F 5 HOH A 14 2014 2014 HOH HOH . F 5 HOH A 15 2015 2015 HOH HOH . F 5 HOH A 16 2016 2016 HOH HOH . F 5 HOH A 17 2017 2017 HOH HOH . F 5 HOH A 18 2018 2018 HOH HOH . F 5 HOH A 19 2019 2019 HOH HOH . F 5 HOH A 20 2020 2020 HOH HOH . F 5 HOH A 21 2021 2021 HOH HOH . F 5 HOH A 22 2022 2022 HOH HOH . F 5 HOH A 23 2023 2023 HOH HOH . F 5 HOH A 24 2024 2024 HOH HOH . F 5 HOH A 25 2025 2025 HOH HOH . F 5 HOH A 26 2026 2026 HOH HOH . F 5 HOH A 27 2027 2027 HOH HOH . F 5 HOH A 28 2028 2028 HOH HOH . F 5 HOH A 29 2029 2029 HOH HOH . G 5 HOH B 1 2001 2001 HOH HOH . G 5 HOH B 2 2002 2002 HOH HOH . G 5 HOH B 3 2003 2003 HOH HOH . G 5 HOH B 4 2004 2004 HOH HOH . G 5 HOH B 5 2005 2005 HOH HOH . G 5 HOH B 6 2006 2006 HOH HOH . G 5 HOH B 7 2007 2007 HOH HOH . G 5 HOH B 8 2008 2008 HOH HOH . G 5 HOH B 9 2009 2009 HOH HOH . G 5 HOH B 10 2010 2010 HOH HOH . G 5 HOH B 11 2011 2011 HOH HOH . G 5 HOH B 12 2012 2012 HOH HOH . G 5 HOH B 13 2013 2013 HOH HOH . G 5 HOH B 14 2014 2014 HOH HOH . G 5 HOH B 15 2015 2015 HOH HOH . G 5 HOH B 16 2016 2016 HOH HOH . G 5 HOH B 17 2017 2017 HOH HOH . G 5 HOH B 18 2018 2018 HOH HOH . G 5 HOH B 19 2019 2019 HOH HOH . G 5 HOH B 20 2020 2020 HOH HOH . G 5 HOH B 21 2021 2021 HOH HOH . G 5 HOH B 22 2022 2022 HOH HOH . G 5 HOH B 23 2023 2023 HOH HOH . G 5 HOH B 24 2024 2024 HOH HOH . G 5 HOH B 25 2025 2025 HOH HOH . G 5 HOH B 26 2026 2026 HOH HOH . G 5 HOH B 27 2027 2027 HOH HOH . G 5 HOH B 28 2028 2028 HOH HOH . G 5 HOH B 29 2029 2029 HOH HOH . G 5 HOH B 30 2030 2030 HOH HOH . G 5 HOH B 31 2031 2031 HOH HOH . G 5 HOH B 32 2032 2032 HOH HOH . G 5 HOH B 33 2033 2033 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x 55.614 _atom_site.Cartn_y 34.535 _atom_site.Cartn_z 126.232 _atom_site.occupancy 0.3 _atom_site.B_iso_or_equiv 50.7 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 1289 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #