data_2J7K # _model_server_result.job_id 7Vpc057uYsX2afAts3xviQ _model_server_result.datetime_utc '2025-07-19 23:53:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2j7k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":900}' # _entry.id 2J7K # _exptl.entry_id 2J7K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 521.208 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2J7K _cell.length_a 77.23 _cell.length_b 88.68 _cell.length_c 114.9 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2J7K _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 26 A THR 26 1_555 C MG MG . A MG 950 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? metalc ? metalc2 A OE2 GLU 295 A GLU 295 3_655 C MG MG . A MG 950 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? metalc ? metalc3 B O2G GCP . A GCP 900 1_555 C MG MG . A MG 950 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc4 B O2B GCP . A GCP 900 1_555 C MG MG . A MG 950 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.773 ? # _chem_comp.formula 'C11 H18 N5 O13 P3' _chem_comp.formula_weight 521.208 _chem_comp.id GCP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GCP doub 83 n n PG O2G GCP sing 84 n n PG O3G GCP sing 85 n n PG C3B GCP sing 86 n n O2G HOG2 GCP sing 87 n n O3G HOG3 GCP sing 88 n n C3B PB GCP sing 89 n n C3B H3B1 GCP sing 90 n n C3B H3B2 GCP sing 91 n n PB O1B GCP doub 92 n n PB O2B GCP sing 93 n n PB O3A GCP sing 94 n n O2B HOB2 GCP sing 95 n n O3A PA GCP sing 96 n n PA O1A GCP doub 97 n n PA O2A GCP sing 98 n n PA O5' GCP sing 99 n n O2A HOA2 GCP sing 100 n n O5' C5' GCP sing 101 n n C5' C4' GCP sing 102 n n C5' "H5'2" GCP sing 103 n n C5' "H5'1" GCP sing 104 n n C4' O4' GCP sing 105 n n C4' C3' GCP sing 106 n n C4' H4' GCP sing 107 n n O4' C1' GCP sing 108 n n C3' O3' GCP sing 109 n n C3' C2' GCP sing 110 n n C3' H3' GCP sing 111 n n O3' HO3' GCP sing 112 n n C2' O2' GCP sing 113 n n C2' C1' GCP sing 114 n n C2' H2' GCP sing 115 n n O2' HO2' GCP sing 116 n n C1' N9 GCP sing 117 n n C1' H1' GCP sing 118 n n N9 C8 GCP sing 119 n y N9 C4 GCP sing 120 n y C8 N7 GCP doub 121 n y C8 H8 GCP sing 122 n n N7 C5 GCP sing 123 n y C5 C6 GCP sing 124 n y C5 C4 GCP doub 125 n y C6 O6 GCP doub 126 n n C6 N1 GCP sing 127 n y N1 C2 GCP sing 128 n y N1 HN1 GCP sing 129 n n C2 N2 GCP sing 130 n n C2 N3 GCP doub 131 n y N2 HN21 GCP sing 132 n n N2 HN22 GCP sing 133 n n N3 C4 GCP sing 134 n y # _atom_sites.entry_id 2J7K _atom_sites.fract_transf_matrix[1][1] 0.012948 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011276 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008703 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GCP A 1 900 900 GCP GCP . C 3 MG A 1 950 950 MG MG . D 4 HOH A 1 2001 2001 HOH HOH . D 4 HOH A 2 2002 2002 HOH HOH . D 4 HOH A 3 2003 2003 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GCP . . . B 2 37.6 17.607 37.286 1 60.99 ? PG GCP 900 A 1 HETATM 2 O O1G GCP . . . B 2 36.2 18.12 37.536 1 61.07 ? O1G GCP 900 A 1 HETATM 3 O O2G GCP . . . B 2 37.937 17.473 35.819 1 61.33 ? O2G GCP 900 A 1 HETATM 4 O O3G GCP . . . B 2 37.966 16.378 38.088 1 61.44 ? O3G GCP 900 A 1 HETATM 5 C C3B GCP . . . B 2 38.688 18.918 37.915 1 59.03 ? C3B GCP 900 A 1 HETATM 6 P PB GCP . . . B 2 40.424 18.389 37.888 1 57.3 ? PB GCP 900 A 1 HETATM 7 O O1B GCP . . . B 2 40.607 17.394 39.002 1 57.5 ? O1B GCP 900 A 1 HETATM 8 O O2B GCP . . . B 2 40.79 17.967 36.486 1 56.04 ? O2B GCP 900 A 1 HETATM 9 O O3A GCP . . . B 2 41.351 19.647 38.285 1 57.31 ? O3A GCP 900 A 1 HETATM 10 P PA GCP . . . B 2 41.636 20.868 37.266 1 57.18 ? PA GCP 900 A 1 HETATM 11 O O1A GCP . . . B 2 43.127 21.088 37.184 1 56.45 ? O1A GCP 900 A 1 HETATM 12 O O2A GCP . . . B 2 40.819 20.649 36.01 1 56.63 ? O2A GCP 900 A 1 HETATM 13 O O5' GCP . . . B 2 41.009 22.13 38.041 1 57.74 ? O5' GCP 900 A 1 HETATM 14 C C5' GCP . . . B 2 41.385 22.456 39.384 1 59.01 ? C5' GCP 900 A 1 HETATM 15 C C4' GCP . . . B 2 41.457 23.974 39.572 1 59.26 ? C4' GCP 900 A 1 HETATM 16 O O4' GCP . . . B 2 42.51 24.336 40.476 1 58.7 ? O4' GCP 900 A 1 HETATM 17 C C3' GCP . . . B 2 41.741 24.673 38.255 1 59.56 ? C3' GCP 900 A 1 HETATM 18 O O3' GCP . . . B 2 40.876 25.81 38.148 1 60.76 ? O3' GCP 900 A 1 HETATM 19 C C2' GCP . . . B 2 43.198 25.081 38.334 1 58.99 ? C2' GCP 900 A 1 HETATM 20 O O2' GCP . . . B 2 43.437 26.334 37.696 1 59.42 ? O2' GCP 900 A 1 HETATM 21 C C1' GCP . . . B 2 43.505 25.129 39.823 1 58.79 ? C1' GCP 900 A 1 HETATM 22 N N9 GCP . . . B 2 44.862 24.585 40.081 1 58.85 ? N9 GCP 900 A 1 HETATM 23 C C8 GCP . . . B 2 45.417 23.507 39.485 1 59.18 ? C8 GCP 900 A 1 HETATM 24 N N7 GCP . . . B 2 46.675 23.273 39.936 1 59.03 ? N7 GCP 900 A 1 HETATM 25 C C5 GCP . . . B 2 46.943 24.219 40.85 1 58.69 ? C5 GCP 900 A 1 HETATM 26 C C6 GCP . . . B 2 48.096 24.554 41.713 1 58.81 ? C6 GCP 900 A 1 HETATM 27 O O6 GCP . . . B 2 49.139 23.866 41.68 1 58.79 ? O6 GCP 900 A 1 HETATM 28 N N1 GCP . . . B 2 47.973 25.618 42.526 1 59.08 ? N1 GCP 900 A 1 HETATM 29 C C2 GCP . . . B 2 46.85 26.372 42.572 1 58.89 ? C2 GCP 900 A 1 HETATM 30 N N2 GCP . . . B 2 46.803 27.424 43.418 1 58.82 ? N2 GCP 900 A 1 HETATM 31 N N3 GCP . . . B 2 45.759 26.121 41.804 1 58.52 ? N3 GCP 900 A 1 HETATM 32 C C4 GCP . . . B 2 45.749 25.08 40.941 1 58.53 ? C4 GCP 900 A 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 32 #