data_2J9M # _model_server_result.job_id PKImCtC114ZBfGqWZOMSRw _model_server_result.datetime_utc '2025-02-05 13:51:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2j9m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":299}' # _entry.id 2J9M # _exptl.entry_id 2J9M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.252 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '6-BROMO-13-THIA-2,4,8,12,19-PENTAAZATRICYCLO[12.3.1.1~3,7~]NONADECA-1(18),3(19),4,6,14,16-HEXAENE 13,13-DIOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2J9M _cell.length_a 52.936 _cell.length_b 69.934 _cell.length_c 71.687 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2J9M _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C13 H14 Br N5 O2 S' _chem_comp.formula_weight 384.252 _chem_comp.id PY8 _chem_comp.mon_nstd_flag . _chem_comp.name '6-BROMO-13-THIA-2,4,8,12,19-PENTAAZATRICYCLO[12.3.1.1~3,7~]NONADECA-1(18),3(19),4,6,14,16-HEXAENE 13,13-DIOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1(5)-BROMO-4-THIA-2,5,9-TRIAZA-1(2,4)-PYRIMIDINA-3(1,3)-BENZENACYLCLANONAPHANE-4,4-DIOXIDE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag BR1 C1 PY8 sing 277 n n C1 C2 PY8 sing 278 n y C1 C6 PY8 doub 279 n y C2 N3 PY8 doub 280 n y C2 H2 PY8 sing 281 n n N3 C4 PY8 sing 282 n y C4 N5 PY8 doub 283 n y C4 N21 PY8 sing 284 n n N5 C6 PY8 sing 285 n y C6 N7 PY8 sing 286 n n N7 C8 PY8 sing 287 n n N7 H7 PY8 sing 288 n n C8 C9 PY8 sing 289 n n C8 H8C1 PY8 sing 290 n n C8 H8C2 PY8 sing 291 n n C9 C10 PY8 sing 292 n n C9 H9C1 PY8 sing 293 n n C9 H9C2 PY8 sing 294 n n C10 N13 PY8 sing 295 n n C10 H101 PY8 sing 296 n n C10 H102 PY8 sing 297 n n N13 S14 PY8 sing 298 n n N13 H13 PY8 sing 299 n n S14 O14 PY8 doub 300 n n S14 O15 PY8 doub 301 n n S14 C15 PY8 sing 302 n n C15 C20 PY8 sing 303 n y C15 C16 PY8 doub 304 n y C20 C19 PY8 doub 305 n y C20 H20 PY8 sing 306 n n C16 C17 PY8 sing 307 n y C16 H16 PY8 sing 308 n n C17 C18 PY8 doub 309 n y C17 H17 PY8 sing 310 n n C18 C19 PY8 sing 311 n y C18 H18 PY8 sing 312 n n C19 N21 PY8 sing 313 n n N21 H21 PY8 sing 314 n n # _atom_sites.entry_id 2J9M _atom_sites.fract_transf_matrix[1][1] 0.018891 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014299 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01395 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PY8 A 1 299 299 PY8 PY8 . C 3 HOH A 1 2001 2001 HOH HOH . C 3 HOH A 2 2002 2002 HOH HOH . C 3 HOH A 3 2003 2003 HOH HOH . C 3 HOH A 4 2004 2004 HOH HOH . C 3 HOH A 5 2005 2005 HOH HOH . C 3 HOH A 6 2006 2006 HOH HOH . C 3 HOH A 7 2007 2007 HOH HOH . C 3 HOH A 8 2008 2008 HOH HOH . C 3 HOH A 9 2009 2009 HOH HOH . C 3 HOH A 10 2010 2010 HOH HOH . C 3 HOH A 11 2011 2011 HOH HOH . C 3 HOH A 12 2012 2012 HOH HOH . C 3 HOH A 13 2013 2013 HOH HOH . C 3 HOH A 14 2014 2014 HOH HOH . C 3 HOH A 15 2015 2015 HOH HOH . C 3 HOH A 16 2016 2016 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 BR BR1 PY8 . . . B 2 -1.2 30.64 8.692 1 47.67 ? BR1 PY8 299 A 1 HETATM 2 C C1 PY8 . . . B 2 0.375 30.17 7.731 1 44.11 ? C1 PY8 299 A 1 HETATM 3 C C2 PY8 . . . B 2 1.083 31.132 7.023 1 42.33 ? C2 PY8 299 A 1 HETATM 4 N N3 PY8 . . . B 2 2.177 30.804 6.362 1 42.26 ? N3 PY8 299 A 1 HETATM 5 C C4 PY8 . . . B 2 2.629 29.546 6.353 1 43.24 ? C4 PY8 299 A 1 HETATM 6 N N5 PY8 . . . B 2 1.963 28.592 7.021 1 46.38 ? N5 PY8 299 A 1 HETATM 7 C C6 PY8 . . . B 2 0.85 28.864 7.723 1 44.47 ? C6 PY8 299 A 1 HETATM 8 N N7 PY8 . . . B 2 0.207 27.89 8.374 1 43.36 ? N7 PY8 299 A 1 HETATM 9 C C8 PY8 . . . B 2 0.878 26.994 9.336 1 43.95 ? C8 PY8 299 A 1 HETATM 10 C C9 PY8 . . . B 2 1.544 25.808 8.625 1 40.82 ? C9 PY8 299 A 1 HETATM 11 C C10 PY8 . . . B 2 3.04 25.792 8.942 1 43.26 ? C10 PY8 299 A 1 HETATM 12 N N13 PY8 . . . B 2 3.659 24.591 8.354 1 43.53 ? N13 PY8 299 A 1 HETATM 13 S S14 PY8 . . . B 2 5.163 24.812 7.68 1 42.05 ? S14 PY8 299 A 1 HETATM 14 O O14 PY8 . . . B 2 5.623 23.484 7.133 1 41.76 ? O14 PY8 299 A 1 HETATM 15 O O15 PY8 . . . B 2 6.144 25.326 8.684 1 40.04 ? O15 PY8 299 A 1 HETATM 16 C C15 PY8 . . . B 2 5.106 25.966 6.397 1 40.9 ? C15 PY8 299 A 1 HETATM 17 C C20 PY8 . . . B 2 4.427 27.167 6.584 1 42.16 ? C20 PY8 299 A 1 HETATM 18 C C16 PY8 . . . B 2 5.755 25.683 5.198 1 41.34 ? C16 PY8 299 A 1 HETATM 19 C C17 PY8 . . . B 2 5.719 26.602 4.158 1 41.63 ? C17 PY8 299 A 1 HETATM 20 C C18 PY8 . . . B 2 5.038 27.804 4.347 1 43.16 ? C18 PY8 299 A 1 HETATM 21 C C19 PY8 . . . B 2 4.373 28.098 5.547 1 43.25 ? C19 PY8 299 A 1 HETATM 22 N N21 PY8 . . . B 2 3.74 29.277 5.668 1 42.3 ? N21 PY8 299 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 22 #