data_2J9P # _model_server_result.job_id 26PFzyKAW4aYGPPsP94_Ig _model_server_result.datetime_utc '2024-10-14 07:24:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2j9p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":500}' # _entry.id 2J9P # _exptl.entry_id 2J9P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 246.26 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2-AMINO-7-{[(1R)-1-CARBOXYETHYL]AMINO}-7-OXOHEPTANOIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2J9P _cell.length_a 73.859 _cell.length_b 77.586 _cell.length_c 164.739 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2J9P _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS monomeric 1 author_and_software_defined_assembly 1 PQS monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D 1 1 B,E,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OG SER 52 A SER 52 1_555 C C REZ . A REZ 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? covale ? covale2 B OG SER 52 B SER 52 1_555 E C REZ . B REZ 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.313 ? # _chem_comp.formula 'C10 H18 N2 O5' _chem_comp.formula_weight 246.26 _chem_comp.id REZ _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2-AMINO-7-{[(1R)-1-CARBOXYETHYL]AMINO}-7-OXOHEPTANOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CA1 CB1 REZ sing 274 n n CA1 C1 REZ sing 275 n n CA1 HA11 REZ sing 276 n n CA1 HA12 REZ sing 277 n n CB1 CG1 REZ sing 278 n n CB1 HB11 REZ sing 279 n n CB1 HB12 REZ sing 280 n n CG1 CD1 REZ sing 281 n n CG1 HG11 REZ sing 282 n n CG1 HG12 REZ sing 283 n n CD1 CE1 REZ sing 284 n n CD1 HD11 REZ sing 285 n n CD1 HD12 REZ sing 286 n n CE1 NZ1 REZ sing 287 n n CE1 CZ1 REZ sing 288 n n CE1 HE1 REZ sing 289 n n NZ1 HZ11 REZ sing 290 n n NZ1 HZ12 REZ sing 291 n n CZ1 OH1 REZ sing 292 n n CZ1 OH2 REZ doub 293 n n OH1 HH1 REZ sing 294 n n C1 O1 REZ doub 295 n n C1 N REZ sing 296 n n N CA REZ sing 297 n n N H REZ sing 298 n n CA CB REZ sing 299 n n CA C REZ sing 300 n n CA HA REZ sing 301 n n CB HBC1 REZ sing 302 n n CB HBC2 REZ sing 303 n n CB HBC3 REZ sing 304 n n C O REZ doub 305 n n C OXT REZ sing 306 n n OXT HOT REZ sing 307 n n # _atom_sites.entry_id 2J9P _atom_sites.fract_transf_matrix[1][1] 0.013539 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012889 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00607 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 REZ A 1 500 500 REZ REZ . D 3 DAL A 1 501 501 DAL DAL . E 2 REZ B 1 500 500 REZ REZ . F 3 DAL B 1 501 501 DAL DAL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CA1 REZ . . . C 2 7.402 9.344 69.529 1 49.9 ? CA1 REZ 500 A 1 HETATM 2 C CB1 REZ . . . C 2 8.409 9.652 68.437 1 52.77 ? CB1 REZ 500 A 1 HETATM 3 C CG1 REZ . . . C 2 8.19 8.879 67.149 1 53.79 ? CG1 REZ 500 A 1 HETATM 4 C CD1 REZ . . . C 2 9.168 9.372 66.082 1 54.69 ? CD1 REZ 500 A 1 HETATM 5 C CE1 REZ . . . C 2 9.214 8.522 64.809 1 54.4 ? CE1 REZ 500 A 1 HETATM 6 N NZ1 REZ . . . C 2 10.23 9.078 63.867 1 53.74 ? NZ1 REZ 500 A 1 HETATM 7 C CZ1 REZ . . . C 2 9.534 7.075 65.173 1 53.44 ? CZ1 REZ 500 A 1 HETATM 8 O OH1 REZ . . . C 2 10.715 6.777 65.428 1 54.2 ? OH1 REZ 500 A 1 HETATM 9 O OH2 REZ . . . C 2 8.596 6.259 65.203 1 53.26 ? OH2 REZ 500 A 1 HETATM 10 C C1 REZ . . . C 2 7.809 10.012 70.811 1 48.64 ? C1 REZ 500 A 1 HETATM 11 O O1 REZ . . . C 2 7.267 11.044 71.211 1 48.79 ? O1 REZ 500 A 1 HETATM 12 N N REZ . . . C 2 8.794 9.419 71.463 1 47.51 ? N REZ 500 A 1 HETATM 13 C CA REZ . . . C 2 9.299 9.996 72.685 1 45.89 ? CA REZ 500 A 1 HETATM 14 C CB REZ . . . C 2 10.539 10.829 72.373 1 46.95 ? CB REZ 500 A 1 HETATM 15 C C REZ . . . C 2 9.63 8.966 73.746 1 42.82 ? C REZ 500 A 1 HETATM 16 O O REZ . . . C 2 9.752 7.764 73.477 1 41.04 ? O REZ 500 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 16 #