data_2JAF
#
_model_server_result.job_id            3HI9ZT_HU1yEpt9TmXwxSg 
_model_server_result.datetime_utc      '2024-11-09 02:41:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2jaf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":700}' 
#
_entry.id    2JAF 
#
_exptl.entry_id    2JAF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              256.424 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PALMITIC ACID' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2JAF 
_cell.length_a            94.473 
_cell.length_b            94.473 
_cell.length_c            157.137 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2JAF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        155 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'H 3 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 94.473 0 0 
3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 47.2365 81.816018 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            NZ 
_struct_conn.ptnr1_label_comp_id            LYS 
_struct_conn.ptnr1_label_seq_id             242 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             LYS 
_struct_conn.ptnr1_auth_seq_id              242 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            G 
_struct_conn.ptnr2_label_atom_id            C15 
_struct_conn.ptnr2_label_comp_id            RET 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             RET 
_struct_conn.ptnr2_auth_seq_id              900 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.304 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C16 H32 O2' 
_chem_comp.formula_weight    256.424 
_chem_comp.id                PLM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PALMITIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 PLM sing 308 n n 
C1 O2 PLM doub 309 n n 
C1 C2 PLM sing 310 n n 
O1 H PLM sing 311 n n 
C2 C3 PLM sing 312 n n 
C2 H21 PLM sing 313 n n 
C2 H22 PLM sing 314 n n 
C3 C4 PLM sing 315 n n 
C3 H31 PLM sing 316 n n 
C3 H32 PLM sing 317 n n 
C4 C5 PLM sing 318 n n 
C4 H41 PLM sing 319 n n 
C4 H42 PLM sing 320 n n 
C5 C6 PLM sing 321 n n 
C5 H51 PLM sing 322 n n 
C5 H52 PLM sing 323 n n 
C6 C7 PLM sing 324 n n 
C6 H61 PLM sing 325 n n 
C6 H62 PLM sing 326 n n 
C7 C8 PLM sing 327 n n 
C7 H71 PLM sing 328 n n 
C7 H72 PLM sing 329 n n 
C8 C9 PLM sing 330 n n 
C8 H81 PLM sing 331 n n 
C8 H82 PLM sing 332 n n 
C9 CA PLM sing 333 n n 
C9 H91 PLM sing 334 n n 
C9 H92 PLM sing 335 n n 
CA CB PLM sing 336 n n 
CA HA1 PLM sing 337 n n 
CA HA2 PLM sing 338 n n 
CB CC PLM sing 339 n n 
CB HB1 PLM sing 340 n n 
CB HB2 PLM sing 341 n n 
CC CD PLM sing 342 n n 
CC HC1 PLM sing 343 n n 
CC HC2 PLM sing 344 n n 
CD CE PLM sing 345 n n 
CD HD1 PLM sing 346 n n 
CD HD2 PLM sing 347 n n 
CE CF PLM sing 348 n n 
CE HE1 PLM sing 349 n n 
CE HE2 PLM sing 350 n n 
CF CG PLM sing 351 n n 
CF HF1 PLM sing 352 n n 
CF HF2 PLM sing 353 n n 
CG HG1 PLM sing 354 n n 
CG HG2 PLM sing 355 n n 
CG HG3 PLM sing 356 n n 
#
_atom_sites.entry_id                     2JAF 
_atom_sites.fract_transf_matrix[1][1]    0.010585 
_atom_sites.fract_transf_matrix[1][2]    0.006111 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012223 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006364 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CL A 1 501 501 CL CL . 
C 2 CL A 1 502 502 CL CL . 
D 3 PLM A 1 700 700 PLM PLM . 
E 3 PLM A 1 701 701 PLM PLM . 
F 4 BOG A 1 801 801 BOG BOG . 
G 5 RET A 1 900 900 RET RET . 
H 6 HOH A 1 2001 2001 HOH HOH . 
H 6 HOH A 2 2002 2002 HOH HOH . 
H 6 HOH A 3 2003 2003 HOH HOH . 
H 6 HOH A 4 2004 2004 HOH HOH . 
H 6 HOH A 5 2005 2005 HOH HOH . 
H 6 HOH A 6 2006 2006 HOH HOH . 
H 6 HOH A 7 2007 2007 HOH HOH . 
H 6 HOH A 8 2008 2008 HOH HOH . 
H 6 HOH A 9 2009 2009 HOH HOH . 
H 6 HOH A 10 2010 2010 HOH HOH . 
H 6 HOH A 11 2011 2011 HOH HOH . 
H 6 HOH A 12 2012 2012 HOH HOH . 
H 6 HOH A 13 2013 2013 HOH HOH . 
H 6 HOH A 14 2014 2014 HOH HOH . 
H 6 HOH A 15 2015 2015 HOH HOH . 
H 6 HOH A 16 2016 2016 HOH HOH . 
H 6 HOH A 17 2017 2017 HOH HOH . 
H 6 HOH A 18 2018 2018 HOH HOH . 
H 6 HOH A 19 2019 2019 HOH HOH . 
H 6 HOH A 20 2020 2020 HOH HOH . 
H 6 HOH A 21 2021 2021 HOH HOH . 
H 6 HOH A 22 2022 2022 HOH HOH . 
H 6 HOH A 23 2023 2023 HOH HOH . 
H 6 HOH A 24 2024 2024 HOH HOH . 
H 6 HOH A 25 2025 2025 HOH HOH . 
H 6 HOH A 26 2026 2026 HOH HOH . 
H 6 HOH A 27 2027 2027 HOH HOH . 
H 6 HOH A 28 2028 2028 HOH HOH . 
H 6 HOH A 29 2029 2029 HOH HOH . 
H 6 HOH A 30 2030 2030 HOH HOH . 
H 6 HOH A 31 2031 2031 HOH HOH . 
H 6 HOH A 32 2032 2032 HOH HOH . 
H 6 HOH A 33 2033 2033 HOH HOH . 
H 6 HOH A 34 2034 2034 HOH HOH . 
H 6 HOH A 35 2035 2035 HOH HOH . 
H 6 HOH A 36 2036 2036 HOH HOH . 
H 6 HOH A 37 2037 2037 HOH HOH . 
H 6 HOH A 38 2038 2038 HOH HOH . 
H 6 HOH A 39 2039 2039 HOH HOH . 
H 6 HOH A 40 2040 2040 HOH HOH . 
H 6 HOH A 41 2041 2041 HOH HOH . 
H 6 HOH A 42 2042 2042 HOH HOH . 
H 6 HOH A 43 2043 2043 HOH HOH . 
H 6 HOH A 44 2044 2044 HOH HOH . 
H 6 HOH A 45 2045 2045 HOH HOH . 
H 6 HOH A 46 2046 2046 HOH HOH . 
H 6 HOH A 47 2047 2047 HOH HOH . 
H 6 HOH A 48 2048 2048 HOH HOH . 
H 6 HOH A 49 2049 2049 HOH HOH . 
H 6 HOH A 50 2050 2050 HOH HOH . 
H 6 HOH A 51 2051 2051 HOH HOH . 
H 6 HOH A 52 2052 2052 HOH HOH . 
H 6 HOH A 53 2053 2053 HOH HOH . 
H 6 HOH A 54 2054 2054 HOH HOH . 
H 6 HOH A 55 2055 2055 HOH HOH . 
H 6 HOH A 56 2056 2056 HOH HOH . 
H 6 HOH A 57 2057 2057 HOH HOH . 
H 6 HOH A 58 2058 2058 HOH HOH . 
H 6 HOH A 59 2059 2059 HOH HOH . 
H 6 HOH A 60 2060 2060 HOH HOH . 
H 6 HOH A 61 2061 2061 HOH HOH . 
H 6 HOH A 62 2062 2062 HOH HOH . 
H 6 HOH A 63 2063 2063 HOH HOH . 
H 6 HOH A 64 2064 2064 HOH HOH . 
H 6 HOH A 65 2065 2065 HOH HOH . 
H 6 HOH A 66 2066 2066 HOH HOH . 
H 6 HOH A 67 2067 2067 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PLM . . . D 3 51.535 16.999 33.206 1 59.99 ? C1 PLM 700 A 1 
HETATM 2 O O1 PLM . . . D 3 52.253 16.943 34.219 1 59.93 ? O1 PLM 700 A 1 
HETATM 3 O O2 PLM . . . D 3 51.436 16.04 32.408 1 60.88 ? O2 PLM 700 A 1 
HETATM 4 C C2 PLM . . . D 3 50.765 18.286 32.968 1 59.6 ? C2 PLM 700 A 1 
HETATM 5 C C3 PLM . . . D 3 50.881 18.887 31.571 1 59.28 ? C3 PLM 700 A 1 
HETATM 6 C C4 PLM . . . D 3 50.025 20.144 31.533 1 59.22 ? C4 PLM 700 A 1 
HETATM 7 C C5 PLM . . . D 3 50.109 20.782 30.163 1 59.53 ? C5 PLM 700 A 1 
HETATM 8 C C6 PLM . . . D 3 48.755 20.992 29.53 1 59.02 ? C6 PLM 700 A 1 
HETATM 9 C C7 PLM . . . D 3 49.007 21.887 28.334 1 59 ? C7 PLM 700 A 1 
HETATM 10 C C8 PLM . . . D 3 47.738 22.202 27.578 1 59.54 ? C8 PLM 700 A 1 
HETATM 11 C C9 PLM . . . D 3 48.079 23.073 26.381 1 60.18 ? C9 PLM 700 A 1 
HETATM 12 C CA PLM . . . D 3 46.831 23.444 25.603 1 60.11 ? CA PLM 700 A 1 
HETATM 13 C CB PLM . . . D 3 46.976 23.965 24.18 1 60.27 ? CB PLM 700 A 1 
HETATM 14 C CC PLM . . . D 3 47.595 23.032 23.152 1 60.28 ? CC PLM 700 A 1 
HETATM 15 C CD PLM . . . D 3 47.587 23.73 21.805 1 60.37 ? CD PLM 700 A 1 
HETATM 16 C CE PLM . . . D 3 48.185 22.834 20.72 1 60.82 ? CE PLM 700 A 1 
HETATM 17 C CF PLM . . . D 3 48.358 23.663 19.455 1 61.28 ? CF PLM 700 A 1 
HETATM 18 C CG PLM . . . D 3 48.942 22.815 18.336 1 62.16 ? CG PLM 700 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           18 
#