data_2JAG # _model_server_result.job_id 5sLxstyek84-D2a7MgpDIw _model_server_result.datetime_utc '2024-10-18 20:26:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2jag # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":700}' # _entry.id 2JAG # _exptl.entry_id 2JAG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 256.424 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PALMITIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2JAG _cell.length_a 95.042 _cell.length_b 95.042 _cell.length_c 157.674 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2JAG _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 95.042 0 0 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 47.521 82.308786 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 242 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 242 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id F _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 900 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id B _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id B _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.438 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C16 H32 O2' _chem_comp.formula_weight 256.424 _chem_comp.id PLM _chem_comp.mon_nstd_flag . _chem_comp.name 'PALMITIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PLM sing 308 n n C1 O2 PLM doub 309 n n C1 C2 PLM sing 310 n n O1 H PLM sing 311 n n C2 C3 PLM sing 312 n n C2 H21 PLM sing 313 n n C2 H22 PLM sing 314 n n C3 C4 PLM sing 315 n n C3 H31 PLM sing 316 n n C3 H32 PLM sing 317 n n C4 C5 PLM sing 318 n n C4 H41 PLM sing 319 n n C4 H42 PLM sing 320 n n C5 C6 PLM sing 321 n n C5 H51 PLM sing 322 n n C5 H52 PLM sing 323 n n C6 C7 PLM sing 324 n n C6 H61 PLM sing 325 n n C6 H62 PLM sing 326 n n C7 C8 PLM sing 327 n n C7 H71 PLM sing 328 n n C7 H72 PLM sing 329 n n C8 C9 PLM sing 330 n n C8 H81 PLM sing 331 n n C8 H82 PLM sing 332 n n C9 CA PLM sing 333 n n C9 H91 PLM sing 334 n n C9 H92 PLM sing 335 n n CA CB PLM sing 336 n n CA HA1 PLM sing 337 n n CA HA2 PLM sing 338 n n CB CC PLM sing 339 n n CB HB1 PLM sing 340 n n CB HB2 PLM sing 341 n n CC CD PLM sing 342 n n CC HC1 PLM sing 343 n n CC HC2 PLM sing 344 n n CD CE PLM sing 345 n n CD HD1 PLM sing 346 n n CD HD2 PLM sing 347 n n CE CF PLM sing 348 n n CE HE1 PLM sing 349 n n CE HE2 PLM sing 350 n n CF CG PLM sing 351 n n CF HF1 PLM sing 352 n n CF HF2 PLM sing 353 n n CG HG1 PLM sing 354 n n CG HG2 PLM sing 355 n n CG HG3 PLM sing 356 n n # _atom_sites.entry_id 2JAG _atom_sites.fract_transf_matrix[1][1] 0.010522 _atom_sites.fract_transf_matrix[1][2] 0.006075 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012149 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006342 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL A 1 501 501 CL CL . C 2 CL A 1 502 502 CL CL . D 3 PLM A 1 700 700 PLM PLM . E 4 BOG A 1 801 801 BOG BOG . F 5 RET A 1 900 900 RET RET . G 6 HOH A 1 2001 2001 HOH HOH . G 6 HOH A 2 2002 2002 HOH HOH . G 6 HOH A 3 2003 2003 HOH HOH . G 6 HOH A 4 2004 2004 HOH HOH . G 6 HOH A 5 2005 2005 HOH HOH . G 6 HOH A 6 2006 2006 HOH HOH . G 6 HOH A 7 2007 2007 HOH HOH . G 6 HOH A 8 2008 2008 HOH HOH . G 6 HOH A 9 2009 2009 HOH HOH . G 6 HOH A 10 2010 2010 HOH HOH . G 6 HOH A 11 2011 2011 HOH HOH . G 6 HOH A 12 2012 2012 HOH HOH . G 6 HOH A 13 2013 2013 HOH HOH . G 6 HOH A 14 2014 2014 HOH HOH . G 6 HOH A 15 2015 2015 HOH HOH . G 6 HOH A 16 2016 2016 HOH HOH . G 6 HOH A 17 2017 2017 HOH HOH . G 6 HOH A 18 2018 2018 HOH HOH . G 6 HOH A 19 2019 2019 HOH HOH . G 6 HOH A 20 2020 2020 HOH HOH . G 6 HOH A 21 2021 2021 HOH HOH . G 6 HOH A 22 2022 2022 HOH HOH . G 6 HOH A 23 2023 2023 HOH HOH . G 6 HOH A 24 2024 2024 HOH HOH . G 6 HOH A 25 2025 2025 HOH HOH . G 6 HOH A 26 2026 2026 HOH HOH . G 6 HOH A 27 2027 2027 HOH HOH . G 6 HOH A 28 2028 2028 HOH HOH . G 6 HOH A 29 2029 2029 HOH HOH . G 6 HOH A 30 2030 2030 HOH HOH . G 6 HOH A 31 2031 2031 HOH HOH . G 6 HOH A 32 2032 2032 HOH HOH . G 6 HOH A 33 2033 2033 HOH HOH . G 6 HOH A 34 2034 2034 HOH HOH . G 6 HOH A 35 2035 2035 HOH HOH . G 6 HOH A 36 2036 2036 HOH HOH . G 6 HOH A 37 2037 2037 HOH HOH . G 6 HOH A 38 2038 2038 HOH HOH . G 6 HOH A 39 2039 2039 HOH HOH . G 6 HOH A 40 2040 2040 HOH HOH . G 6 HOH A 41 2041 2041 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PLM . . . D 3 51.923 17.059 33.071 1 58.07 ? C1 PLM 700 A 1 HETATM 2 O O1 PLM . . . D 3 52.691 17.064 34.049 1 58.17 ? O1 PLM 700 A 1 HETATM 3 O O2 PLM . . . D 3 51.774 16.063 32.327 1 59.15 ? O2 PLM 700 A 1 HETATM 4 C C2 PLM . . . D 3 51.149 18.338 32.802 1 58.45 ? C2 PLM 700 A 1 HETATM 5 C C3 PLM . . . D 3 51.134 18.848 31.362 1 57.78 ? C3 PLM 700 A 1 HETATM 6 C C4 PLM . . . D 3 50.303 20.122 31.314 1 58.55 ? C4 PLM 700 A 1 HETATM 7 C C5 PLM . . . D 3 50.219 20.668 29.905 1 59.16 ? C5 PLM 700 A 1 HETATM 8 C C6 PLM . . . D 3 48.912 21.374 29.658 1 58.86 ? C6 PLM 700 A 1 HETATM 9 C C7 PLM . . . D 3 49.028 21.978 28.275 1 60.02 ? C7 PLM 700 A 1 HETATM 10 C C8 PLM . . . D 3 47.785 22.706 27.814 1 60.47 ? C8 PLM 700 A 1 HETATM 11 C C9 PLM . . . D 3 48.105 23.252 26.433 1 60.87 ? C9 PLM 700 A 1 HETATM 12 C CA PLM . . . D 3 46.971 24 25.754 1 60.34 ? CA PLM 700 A 1 HETATM 13 C CB PLM . . . D 3 47.315 24.61 24.4 1 59.9 ? CB PLM 700 A 1 HETATM 14 C CC PLM . . . D 3 47.825 23.656 23.331 1 59.77 ? CC PLM 700 A 1 HETATM 15 C CD PLM . . . D 3 48.168 24.312 22.012 1 60.41 ? CD PLM 700 A 1 HETATM 16 C CE PLM . . . D 3 48.632 23.135 21.16 1 59.8 ? CE PLM 700 A 1 HETATM 17 C CF PLM . . . D 3 48.581 23.47 19.678 1 59.81 ? CF PLM 700 A 1 HETATM 18 C CG PLM . . . D 3 49.049 22.249 18.905 1 59.89 ? CG PLM 700 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 337 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 18 #