data_2JAP # _model_server_result.job_id jTOIQeq0_Bbea7hXW07kqw _model_server_result.datetime_utc '2024-12-16 13:03:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2jap # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":1249}' # _entry.id 2JAP # _exptl.entry_id 2JAP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 199.161 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R,3Z,5R)-3-(2-HYDROXYETHYLIDENE)-7-OXO-4-OXA-1-AZABICYCLO[3.2.0]HEPTANE-2-CARBOXYLIC ACID' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2JAP _cell.length_a 58.076 _cell.length_b 123.423 _cell.length_c 126.78 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2JAP _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N ? 3 J N N ? 3 L N N # _chem_comp.formula 'C8 H9 N O5' _chem_comp.formula_weight 199.161 _chem_comp.id J01 _chem_comp.mon_nstd_flag . _chem_comp.name '(2R,3Z,5R)-3-(2-HYDROXYETHYLIDENE)-7-OXO-4-OXA-1-AZABICYCLO[3.2.0]HEPTANE-2-CARBOXYLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'CLAVULANIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 C5 J01 doub 160 n n C5 C4 J01 sing 161 n n C5 N1 J01 sing 162 n n C4 C3 J01 sing 163 n n C4 H4C1 J01 sing 164 n n C4 H4C2 J01 sing 165 n n C3 N1 J01 sing 166 n n C3 O1 J01 sing 167 n n C3 H3 J01 sing 168 n n N1 C2 J01 sing 169 n n O1 C1 J01 sing 170 n n C1 C2 J01 sing 171 n n C1 C6 J01 doub 172 z n C2 C8 J01 sing 173 n n C2 H2 J01 sing 174 n n C8 O5 J01 doub 175 n n C8 O4 J01 sing 176 n n O4 H4 J01 sing 177 n n C6 C7 J01 sing 178 n n C6 H6 J01 sing 179 n n C7 O3 J01 sing 180 n n C7 H7C1 J01 sing 181 n n C7 H7C2 J01 sing 182 n n O3 HA J01 sing 183 n n # _atom_sites.entry_id 2JAP _atom_sites.fract_transf_matrix[1][1] 0.017219 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008102 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007888 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NDP A 1 1248 1248 NDP NDP . F 3 J01 A 1 1249 1249 J01 J01 . G 2 NDP B 1 1248 1248 NDP NDP . H 3 J01 B 1 1249 1249 J01 J01 . I 2 NDP C 1 1248 1248 NDP NDP . J 3 J01 C 1 1249 1249 J01 J01 . K 2 NDP D 1 1248 1248 NDP NDP . L 3 J01 D 1 1249 1249 J01 J01 . M 4 HOH A 1 2001 2001 HOH HOH . M 4 HOH A 2 2002 2002 HOH HOH . M 4 HOH A 3 2003 2003 HOH HOH . M 4 HOH A 4 2004 2004 HOH HOH . M 4 HOH A 5 2005 2005 HOH HOH . M 4 HOH A 6 2006 2006 HOH HOH . M 4 HOH A 7 2007 2007 HOH HOH . M 4 HOH A 8 2008 2008 HOH HOH . M 4 HOH A 9 2009 2009 HOH HOH . M 4 HOH A 10 2010 2010 HOH HOH . M 4 HOH A 11 2011 2011 HOH HOH . M 4 HOH A 12 2012 2012 HOH HOH . M 4 HOH A 13 2013 2013 HOH HOH . M 4 HOH A 14 2014 2014 HOH HOH . M 4 HOH A 15 2015 2015 HOH HOH . M 4 HOH A 16 2016 2016 HOH HOH . M 4 HOH A 17 2017 2017 HOH HOH . M 4 HOH A 18 2018 2018 HOH HOH . M 4 HOH A 19 2019 2019 HOH HOH . M 4 HOH A 20 2020 2020 HOH HOH . M 4 HOH A 21 2021 2021 HOH HOH . M 4 HOH A 22 2022 2022 HOH HOH . M 4 HOH A 23 2023 2023 HOH HOH . M 4 HOH A 24 2024 2024 HOH HOH . M 4 HOH A 25 2025 2025 HOH HOH . M 4 HOH A 26 2026 2026 HOH HOH . M 4 HOH A 27 2027 2027 HOH HOH . M 4 HOH A 28 2028 2028 HOH HOH . M 4 HOH A 29 2029 2029 HOH HOH . M 4 HOH A 30 2030 2030 HOH HOH . M 4 HOH A 31 2031 2031 HOH HOH . M 4 HOH A 32 2032 2032 HOH HOH . M 4 HOH A 33 2033 2033 HOH HOH . M 4 HOH A 34 2034 2034 HOH HOH . M 4 HOH A 35 2035 2035 HOH HOH . M 4 HOH A 36 2036 2036 HOH HOH . M 4 HOH A 37 2037 2037 HOH HOH . M 4 HOH A 38 2038 2038 HOH HOH . M 4 HOH A 39 2039 2039 HOH HOH . M 4 HOH A 40 2040 2040 HOH HOH . M 4 HOH A 41 2041 2041 HOH HOH . M 4 HOH A 42 2042 2042 HOH HOH . M 4 HOH A 43 2043 2043 HOH HOH . M 4 HOH A 44 2044 2044 HOH HOH . M 4 HOH A 45 2045 2045 HOH HOH . M 4 HOH A 46 2046 2046 HOH HOH . M 4 HOH A 47 2047 2047 HOH HOH . M 4 HOH A 48 2048 2048 HOH HOH . M 4 HOH A 49 2049 2049 HOH HOH . M 4 HOH A 50 2050 2050 HOH HOH . M 4 HOH A 51 2051 2051 HOH HOH . M 4 HOH A 52 2052 2052 HOH HOH . M 4 HOH A 53 2053 2053 HOH HOH . M 4 HOH A 54 2054 2054 HOH HOH . M 4 HOH A 55 2055 2055 HOH HOH . M 4 HOH A 56 2056 2056 HOH HOH . M 4 HOH A 57 2057 2057 HOH HOH . M 4 HOH A 58 2058 2058 HOH HOH . M 4 HOH A 59 2059 2059 HOH HOH . M 4 HOH A 60 2060 2060 HOH HOH . M 4 HOH A 61 2061 2061 HOH HOH . M 4 HOH A 62 2062 2062 HOH HOH . M 4 HOH A 63 2063 2063 HOH HOH . M 4 HOH A 64 2064 2064 HOH HOH . M 4 HOH A 65 2065 2065 HOH HOH . M 4 HOH A 66 2066 2066 HOH HOH . M 4 HOH A 67 2067 2067 HOH HOH . M 4 HOH A 68 2068 2068 HOH HOH . N 4 HOH B 1 2001 2001 HOH HOH . N 4 HOH B 2 2002 2002 HOH HOH . N 4 HOH B 3 2003 2003 HOH HOH . N 4 HOH B 4 2004 2004 HOH HOH . N 4 HOH B 5 2005 2005 HOH HOH . N 4 HOH B 6 2006 2006 HOH HOH . N 4 HOH B 7 2007 2007 HOH HOH . N 4 HOH B 8 2008 2008 HOH HOH . N 4 HOH B 9 2009 2009 HOH HOH . N 4 HOH B 10 2010 2010 HOH HOH . N 4 HOH B 11 2011 2011 HOH HOH . N 4 HOH B 12 2012 2012 HOH HOH . N 4 HOH B 13 2013 2013 HOH HOH . N 4 HOH B 14 2014 2014 HOH HOH . N 4 HOH B 15 2015 2015 HOH HOH . N 4 HOH B 16 2016 2016 HOH HOH . N 4 HOH B 17 2017 2017 HOH HOH . N 4 HOH B 18 2018 2018 HOH HOH . N 4 HOH B 19 2019 2019 HOH HOH . N 4 HOH B 20 2020 2020 HOH HOH . N 4 HOH B 21 2021 2021 HOH HOH . N 4 HOH B 22 2022 2022 HOH HOH . N 4 HOH B 23 2023 2023 HOH HOH . N 4 HOH B 24 2024 2024 HOH HOH . N 4 HOH B 25 2025 2025 HOH HOH . N 4 HOH B 26 2026 2026 HOH HOH . N 4 HOH B 27 2027 2027 HOH HOH . N 4 HOH B 28 2028 2028 HOH HOH . N 4 HOH B 29 2029 2029 HOH HOH . N 4 HOH B 30 2030 2030 HOH HOH . N 4 HOH B 31 2031 2031 HOH HOH . N 4 HOH B 32 2032 2032 HOH HOH . N 4 HOH B 33 2033 2033 HOH HOH . N 4 HOH B 34 2034 2034 HOH HOH . N 4 HOH B 35 2035 2035 HOH HOH . N 4 HOH B 36 2036 2036 HOH HOH . N 4 HOH B 37 2037 2037 HOH HOH . N 4 HOH B 38 2038 2038 HOH HOH . N 4 HOH B 39 2039 2039 HOH HOH . N 4 HOH B 40 2040 2040 HOH HOH . N 4 HOH B 41 2041 2041 HOH HOH . N 4 HOH B 42 2042 2042 HOH HOH . N 4 HOH B 43 2043 2043 HOH HOH . N 4 HOH B 44 2044 2044 HOH HOH . N 4 HOH B 45 2045 2045 HOH HOH . N 4 HOH B 46 2046 2046 HOH HOH . N 4 HOH B 47 2047 2047 HOH HOH . N 4 HOH B 48 2048 2048 HOH HOH . N 4 HOH B 49 2049 2049 HOH HOH . N 4 HOH B 50 2050 2050 HOH HOH . N 4 HOH B 51 2051 2051 HOH HOH . N 4 HOH B 52 2052 2052 HOH HOH . N 4 HOH B 53 2053 2053 HOH HOH . N 4 HOH B 54 2054 2054 HOH HOH . N 4 HOH B 55 2055 2055 HOH HOH . N 4 HOH B 56 2056 2056 HOH HOH . O 4 HOH C 1 2001 2001 HOH HOH . O 4 HOH C 2 2002 2002 HOH HOH . O 4 HOH C 3 2003 2003 HOH HOH . O 4 HOH C 4 2004 2004 HOH HOH . O 4 HOH C 5 2005 2005 HOH HOH . O 4 HOH C 6 2006 2006 HOH HOH . O 4 HOH C 7 2007 2007 HOH HOH . O 4 HOH C 8 2008 2008 HOH HOH . O 4 HOH C 9 2009 2009 HOH HOH . O 4 HOH C 10 2010 2010 HOH HOH . O 4 HOH C 11 2011 2011 HOH HOH . O 4 HOH C 12 2012 2012 HOH HOH . O 4 HOH C 13 2013 2013 HOH HOH . O 4 HOH C 14 2014 2014 HOH HOH . O 4 HOH C 15 2015 2015 HOH HOH . O 4 HOH C 16 2016 2016 HOH HOH . O 4 HOH C 17 2017 2017 HOH HOH . O 4 HOH C 18 2018 2018 HOH HOH . O 4 HOH C 19 2019 2019 HOH HOH . O 4 HOH C 20 2020 2020 HOH HOH . O 4 HOH C 21 2021 2021 HOH HOH . O 4 HOH C 22 2022 2022 HOH HOH . O 4 HOH C 23 2023 2023 HOH HOH . O 4 HOH C 24 2024 2024 HOH HOH . O 4 HOH C 25 2025 2025 HOH HOH . O 4 HOH C 26 2026 2026 HOH HOH . O 4 HOH C 27 2027 2027 HOH HOH . O 4 HOH C 28 2028 2028 HOH HOH . O 4 HOH C 29 2029 2029 HOH HOH . O 4 HOH C 30 2030 2030 HOH HOH . O 4 HOH C 31 2031 2031 HOH HOH . O 4 HOH C 32 2032 2032 HOH HOH . O 4 HOH C 33 2033 2033 HOH HOH . O 4 HOH C 34 2034 2034 HOH HOH . O 4 HOH C 35 2035 2035 HOH HOH . O 4 HOH C 36 2036 2036 HOH HOH . O 4 HOH C 37 2037 2037 HOH HOH . O 4 HOH C 38 2038 2038 HOH HOH . O 4 HOH C 39 2039 2039 HOH HOH . O 4 HOH C 40 2040 2040 HOH HOH . O 4 HOH C 41 2041 2041 HOH HOH . O 4 HOH C 42 2042 2042 HOH HOH . O 4 HOH C 43 2043 2043 HOH HOH . O 4 HOH C 44 2044 2044 HOH HOH . O 4 HOH C 45 2045 2045 HOH HOH . O 4 HOH C 46 2046 2046 HOH HOH . O 4 HOH C 47 2047 2047 HOH HOH . O 4 HOH C 48 2048 2048 HOH HOH . O 4 HOH C 49 2049 2049 HOH HOH . O 4 HOH C 50 2050 2050 HOH HOH . O 4 HOH C 51 2051 2051 HOH HOH . O 4 HOH C 52 2052 2052 HOH HOH . O 4 HOH C 53 2053 2053 HOH HOH . O 4 HOH C 54 2054 2054 HOH HOH . O 4 HOH C 55 2055 2055 HOH HOH . O 4 HOH C 56 2056 2056 HOH HOH . O 4 HOH C 57 2057 2057 HOH HOH . O 4 HOH C 58 2058 2058 HOH HOH . O 4 HOH C 59 2059 2059 HOH HOH . O 4 HOH C 60 2060 2060 HOH HOH . O 4 HOH C 61 2061 2061 HOH HOH . O 4 HOH C 62 2062 2062 HOH HOH . O 4 HOH C 63 2063 2063 HOH HOH . O 4 HOH C 64 2064 2064 HOH HOH . O 4 HOH C 65 2065 2065 HOH HOH . O 4 HOH C 66 2066 2066 HOH HOH . O 4 HOH C 67 2067 2067 HOH HOH . O 4 HOH C 68 2068 2068 HOH HOH . O 4 HOH C 69 2069 2069 HOH HOH . O 4 HOH C 70 2070 2070 HOH HOH . O 4 HOH C 71 2071 2071 HOH HOH . O 4 HOH C 72 2072 2072 HOH HOH . O 4 HOH C 73 2073 2073 HOH HOH . P 4 HOH D 1 2001 2001 HOH HOH . P 4 HOH D 2 2002 2002 HOH HOH . P 4 HOH D 3 2003 2003 HOH HOH . P 4 HOH D 4 2004 2004 HOH HOH . P 4 HOH D 5 2005 2005 HOH HOH . P 4 HOH D 6 2006 2006 HOH HOH . P 4 HOH D 7 2007 2007 HOH HOH . P 4 HOH D 8 2008 2008 HOH HOH . P 4 HOH D 9 2009 2009 HOH HOH . P 4 HOH D 10 2010 2010 HOH HOH . P 4 HOH D 11 2011 2011 HOH HOH . P 4 HOH D 12 2012 2012 HOH HOH . P 4 HOH D 13 2013 2013 HOH HOH . P 4 HOH D 14 2014 2014 HOH HOH . P 4 HOH D 15 2015 2015 HOH HOH . P 4 HOH D 16 2016 2016 HOH HOH . P 4 HOH D 17 2017 2017 HOH HOH . P 4 HOH D 18 2018 2018 HOH HOH . P 4 HOH D 19 2019 2019 HOH HOH . P 4 HOH D 20 2020 2020 HOH HOH . P 4 HOH D 21 2021 2021 HOH HOH . P 4 HOH D 22 2022 2022 HOH HOH . P 4 HOH D 23 2023 2023 HOH HOH . P 4 HOH D 24 2024 2024 HOH HOH . P 4 HOH D 25 2025 2025 HOH HOH . P 4 HOH D 26 2026 2026 HOH HOH . P 4 HOH D 27 2027 2027 HOH HOH . P 4 HOH D 28 2028 2028 HOH HOH . P 4 HOH D 29 2029 2029 HOH HOH . P 4 HOH D 30 2030 2030 HOH HOH . P 4 HOH D 31 2031 2031 HOH HOH . P 4 HOH D 32 2032 2032 HOH HOH . P 4 HOH D 33 2033 2033 HOH HOH . P 4 HOH D 34 2034 2034 HOH HOH . P 4 HOH D 35 2035 2035 HOH HOH . P 4 HOH D 36 2036 2036 HOH HOH . P 4 HOH D 37 2037 2037 HOH HOH . P 4 HOH D 38 2038 2038 HOH HOH . P 4 HOH D 39 2039 2039 HOH HOH . P 4 HOH D 40 2040 2040 HOH HOH . P 4 HOH D 41 2041 2041 HOH HOH . P 4 HOH D 42 2042 2042 HOH HOH . P 4 HOH D 43 2043 2043 HOH HOH . P 4 HOH D 44 2044 2044 HOH HOH . P 4 HOH D 45 2045 2045 HOH HOH . P 4 HOH D 46 2046 2046 HOH HOH . P 4 HOH D 47 2047 2047 HOH HOH . P 4 HOH D 48 2048 2048 HOH HOH . P 4 HOH D 49 2049 2049 HOH HOH . P 4 HOH D 50 2050 2050 HOH HOH . P 4 HOH D 51 2051 2051 HOH HOH . P 4 HOH D 52 2052 2052 HOH HOH . P 4 HOH D 53 2053 2053 HOH HOH . P 4 HOH D 54 2054 2054 HOH HOH . P 4 HOH D 55 2055 2055 HOH HOH . P 4 HOH D 56 2056 2056 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2 J01 . . . L 3 35.953 -29.599 42.207 0.95 41.51 ? O2 J01 1249 D 1 HETATM 2 C C5 J01 . . . L 3 37.024 -29.199 41.753 0.95 42.49 ? C5 J01 1249 D 1 HETATM 3 C C4 J01 . . . L 3 37.811 -27.95 42.021 0.95 41.45 ? C4 J01 1249 D 1 HETATM 4 C C3 J01 . . . L 3 38.842 -28.661 41.149 0.95 42.24 ? C3 J01 1249 D 1 HETATM 5 N N1 J01 . . . L 3 37.916 -29.781 40.834 0.95 42.93 ? N1 J01 1249 D 1 HETATM 6 O O1 J01 . . . L 3 39.922 -29.166 41.944 0.95 42.14 ? O1 J01 1249 D 1 HETATM 7 C C1 J01 . . . L 3 39.749 -30.606 41.991 0.95 42.55 ? C1 J01 1249 D 1 HETATM 8 C C2 J01 . . . L 3 38.52 -31.052 41.275 0.95 41.6 ? C2 J01 1249 D 1 HETATM 9 C C8 J01 . . . L 3 38.866 -31.934 40.104 0.95 40.74 ? C8 J01 1249 D 1 HETATM 10 O O5 J01 . . . L 3 39.167 -33.128 40.353 0.95 38.77 ? O5 J01 1249 D 1 HETATM 11 O O4 J01 . . . L 3 38.841 -31.457 38.942 0.95 37.4 ? O4 J01 1249 D 1 HETATM 12 C C6 J01 . . . L 3 40.578 -31.486 42.595 0.95 41.67 ? C6 J01 1249 D 1 HETATM 13 C C7 J01 . . . L 3 41.829 -31.114 43.355 0.95 41.1 ? C7 J01 1249 D 1 HETATM 14 O O3 J01 . . . L 3 42.401 -29.887 42.903 0.95 39.22 ? O3 J01 1249 D 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #