data_2JAQ # _model_server_result.job_id duri61KHfBJT98iAQcz9NA _model_server_result.datetime_utc '2025-03-01 19:11:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2jaq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1202}' # _entry.id 2JAQ # _exptl.entry_id 2JAQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 467.157 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2JAQ _cell.length_a 84.527 _cell.length_b 84.527 _cell.length_c 53.603 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2JAQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C9 H16 N3 O13 P3' _chem_comp.formula_weight 467.157 _chem_comp.id DCP _chem_comp.mon_nstd_flag . _chem_comp.name "2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 DCP sing 70 n n N1 C6 DCP sing 71 n n N1 C1' DCP sing 72 n n C2 N3 DCP sing 73 n n C2 O2 DCP doub 74 n n N3 C4 DCP doub 75 n n C4 C5 DCP sing 76 n n C4 N4 DCP sing 77 n n C5 C6 DCP doub 78 n n C5 H5 DCP sing 79 n n C6 H6 DCP sing 80 n n N4 HN41 DCP sing 81 n n N4 HN42 DCP sing 82 n n C1' C2' DCP sing 83 n n C1' O4' DCP sing 84 n n C1' H1' DCP sing 85 n n C2' C3' DCP sing 86 n n C2' "H2'1" DCP sing 87 n n C2' "H2'2" DCP sing 88 n n C3' C4' DCP sing 89 n n C3' O3' DCP sing 90 n n C3' H3' DCP sing 91 n n C4' O4' DCP sing 92 n n C4' C5' DCP sing 93 n n C4' H4' DCP sing 94 n n O3' HO3' DCP sing 95 n n C5' O5' DCP sing 96 n n C5' "H5'1" DCP sing 97 n n C5' "H5'2" DCP sing 98 n n O5' PA DCP sing 99 n n PA O1A DCP doub 100 n n PA O2A DCP sing 101 n n PA O3A DCP sing 102 n n O2A HOA2 DCP sing 103 n n O3A PB DCP sing 104 n n PB O1B DCP doub 105 n n PB O2B DCP sing 106 n n PB O3B DCP sing 107 n n O2B HOB2 DCP sing 108 n n O3B PG DCP sing 109 n n PG O1G DCP doub 110 n n PG O2G DCP sing 111 n n PG O3G DCP sing 112 n n O2G HOG2 DCP sing 113 n n O3G HOG3 DCP sing 114 n n # _atom_sites.entry_id 2JAQ _atom_sites.fract_transf_matrix[1][1] 0.011831 _atom_sites.fract_transf_matrix[1][2] 0.00683 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013661 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018656 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DCP A 1 1202 1202 DCP DCP . D 2 DCP B 1 1202 1202 DCP DCP . E 3 HOH A 1 2001 2001 HOH HOH . E 3 HOH A 2 2002 2002 HOH HOH . E 3 HOH A 3 2003 2003 HOH HOH . E 3 HOH A 4 2004 2004 HOH HOH . E 3 HOH A 5 2005 2005 HOH HOH . E 3 HOH A 6 2006 2006 HOH HOH . E 3 HOH A 7 2007 2007 HOH HOH . E 3 HOH A 8 2008 2008 HOH HOH . E 3 HOH A 9 2009 2009 HOH HOH . E 3 HOH A 10 2010 2010 HOH HOH . E 3 HOH A 11 2011 2011 HOH HOH . E 3 HOH A 12 2012 2012 HOH HOH . E 3 HOH A 13 2013 2013 HOH HOH . E 3 HOH A 14 2014 2014 HOH HOH . E 3 HOH A 15 2015 2015 HOH HOH . E 3 HOH A 16 2016 2016 HOH HOH . E 3 HOH A 17 2017 2017 HOH HOH . E 3 HOH A 18 2018 2018 HOH HOH . E 3 HOH A 19 2019 2019 HOH HOH . E 3 HOH A 20 2020 2020 HOH HOH . E 3 HOH A 21 2021 2021 HOH HOH . E 3 HOH A 22 2022 2022 HOH HOH . E 3 HOH A 23 2023 2023 HOH HOH . E 3 HOH A 24 2024 2024 HOH HOH . E 3 HOH A 25 2025 2025 HOH HOH . E 3 HOH A 26 2026 2026 HOH HOH . E 3 HOH A 27 2027 2027 HOH HOH . E 3 HOH A 28 2028 2028 HOH HOH . E 3 HOH A 29 2029 2029 HOH HOH . E 3 HOH A 30 2030 2030 HOH HOH . E 3 HOH A 31 2031 2031 HOH HOH . E 3 HOH A 32 2032 2032 HOH HOH . E 3 HOH A 33 2033 2033 HOH HOH . E 3 HOH A 34 2034 2034 HOH HOH . E 3 HOH A 35 2035 2035 HOH HOH . E 3 HOH A 36 2036 2036 HOH HOH . E 3 HOH A 37 2037 2037 HOH HOH . E 3 HOH A 38 2038 2038 HOH HOH . E 3 HOH A 39 2039 2039 HOH HOH . E 3 HOH A 40 2040 2040 HOH HOH . E 3 HOH A 41 2041 2041 HOH HOH . E 3 HOH A 42 2042 2042 HOH HOH . E 3 HOH A 43 2043 2043 HOH HOH . E 3 HOH A 44 2044 2044 HOH HOH . E 3 HOH A 45 2045 2045 HOH HOH . E 3 HOH A 46 2046 2046 HOH HOH . E 3 HOH A 47 2047 2047 HOH HOH . E 3 HOH A 48 2048 2048 HOH HOH . E 3 HOH A 49 2049 2049 HOH HOH . E 3 HOH A 50 2050 2050 HOH HOH . E 3 HOH A 51 2051 2051 HOH HOH . E 3 HOH A 52 2052 2052 HOH HOH . F 3 HOH B 1 2001 2001 HOH HOH . F 3 HOH B 2 2002 2002 HOH HOH . F 3 HOH B 3 2003 2003 HOH HOH . F 3 HOH B 4 2004 2004 HOH HOH . F 3 HOH B 5 2005 2005 HOH HOH . F 3 HOH B 6 2006 2006 HOH HOH . F 3 HOH B 7 2007 2007 HOH HOH . F 3 HOH B 8 2008 2008 HOH HOH . F 3 HOH B 9 2009 2009 HOH HOH . F 3 HOH B 10 2010 2010 HOH HOH . F 3 HOH B 11 2011 2011 HOH HOH . F 3 HOH B 12 2012 2012 HOH HOH . F 3 HOH B 13 2013 2013 HOH HOH . F 3 HOH B 14 2014 2014 HOH HOH . F 3 HOH B 15 2015 2015 HOH HOH . F 3 HOH B 16 2016 2016 HOH HOH . F 3 HOH B 17 2017 2017 HOH HOH . F 3 HOH B 18 2018 2018 HOH HOH . F 3 HOH B 19 2019 2019 HOH HOH . F 3 HOH B 20 2020 2020 HOH HOH . F 3 HOH B 21 2021 2021 HOH HOH . F 3 HOH B 22 2022 2022 HOH HOH . F 3 HOH B 23 2023 2023 HOH HOH . F 3 HOH B 24 2024 2024 HOH HOH . F 3 HOH B 25 2025 2025 HOH HOH . F 3 HOH B 26 2026 2026 HOH HOH . F 3 HOH B 27 2027 2027 HOH HOH . F 3 HOH B 28 2028 2028 HOH HOH . F 3 HOH B 29 2029 2029 HOH HOH . F 3 HOH B 30 2030 2030 HOH HOH . F 3 HOH B 31 2031 2031 HOH HOH . F 3 HOH B 32 2032 2032 HOH HOH . F 3 HOH B 33 2033 2033 HOH HOH . F 3 HOH B 34 2034 2034 HOH HOH . F 3 HOH B 35 2035 2035 HOH HOH . F 3 HOH B 36 2036 2036 HOH HOH . F 3 HOH B 37 2037 2037 HOH HOH . F 3 HOH B 38 2038 2038 HOH HOH . F 3 HOH B 39 2039 2039 HOH HOH . F 3 HOH B 40 2040 2040 HOH HOH . F 3 HOH B 41 2041 2041 HOH HOH . F 3 HOH B 42 2042 2042 HOH HOH . F 3 HOH B 43 2043 2043 HOH HOH . F 3 HOH B 44 2044 2044 HOH HOH . F 3 HOH B 45 2045 2045 HOH HOH . F 3 HOH B 46 2046 2046 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 DCP . . . D 2 -24.114 6.322 13.717 1 21.06 ? N1 DCP 1202 B 1 HETATM 2 C C2 DCP . . . D 2 -23.657 6.589 12.414 1 20.5 ? C2 DCP 1202 B 1 HETATM 3 N N3 DCP . . . D 2 -24.537 6.8 11.418 1 21.3 ? N3 DCP 1202 B 1 HETATM 4 C C4 DCP . . . D 2 -25.863 6.758 11.65 1 21.23 ? C4 DCP 1202 B 1 HETATM 5 C C5 DCP . . . D 2 -26.34 6.498 12.938 1 20.16 ? C5 DCP 1202 B 1 HETATM 6 C C6 DCP . . . D 2 -25.434 6.279 13.97 1 20.36 ? C6 DCP 1202 B 1 HETATM 7 O O2 DCP . . . D 2 -22.431 6.639 12.176 1 21.01 ? O2 DCP 1202 B 1 HETATM 8 N N4 DCP . . . D 2 -26.708 6.977 10.611 1 20.67 ? N4 DCP 1202 B 1 HETATM 9 C C1' DCP . . . D 2 -23.102 6.075 14.754 1 21.32 ? C1' DCP 1202 B 1 HETATM 10 C C2' DCP . . . D 2 -22.809 7.288 15.63 1 21.89 ? C2' DCP 1202 B 1 HETATM 11 C C3' DCP . . . D 2 -22.679 6.713 17.03 1 23.16 ? C3' DCP 1202 B 1 HETATM 12 C C4' DCP . . . D 2 -23.378 5.364 16.978 1 22.94 ? C4' DCP 1202 B 1 HETATM 13 O O4' DCP . . . D 2 -23.523 5.002 15.597 1 21.52 ? O4' DCP 1202 B 1 HETATM 14 O O3' DCP . . . D 2 -21.287 6.541 17.324 1 22.69 ? O3' DCP 1202 B 1 HETATM 15 C C5' DCP . . . D 2 -24.77 5.44 17.579 1 24.98 ? C5' DCP 1202 B 1 HETATM 16 O O5' DCP . . . D 2 -24.727 5.334 18.996 1 26.19 ? O5' DCP 1202 B 1 HETATM 17 P PA DCP . . . D 2 -26.085 5.3 19.853 1 27.03 ? PA DCP 1202 B 1 HETATM 18 O O1A DCP . . . D 2 -25.746 4.652 21.18 1 27.95 ? O1A DCP 1202 B 1 HETATM 19 O O2A DCP . . . D 2 -27.208 4.73 19.019 1 26.86 ? O2A DCP 1202 B 1 HETATM 20 O O3A DCP . . . D 2 -26.515 6.835 20.196 1 27.77 ? O3A DCP 1202 B 1 HETATM 21 P PB DCP . . . D 2 -25.509 8.075 20.382 1 26.23 ? PB DCP 1202 B 1 HETATM 22 O O1B DCP . . . D 2 -25.887 9.05 19.298 1 26.16 ? O1B DCP 1202 B 1 HETATM 23 O O2B DCP . . . D 2 -24.109 7.536 20.472 1 26.42 ? O2B DCP 1202 B 1 HETATM 24 O O3B DCP . . . D 2 -25.66 8.776 21.868 1 28.7 ? O3B DCP 1202 B 1 HETATM 25 P PG DCP . . . D 2 -27.002 9.236 22.639 1 23.7 ? PG DCP 1202 B 1 HETATM 26 O O1G DCP . . . D 2 -26.828 9 24.095 1 25.7 ? O1G DCP 1202 B 1 HETATM 27 O O2G DCP . . . D 2 -27.926 8.236 22.01 1 29.26 ? O2G DCP 1202 B 1 HETATM 28 O O3G DCP . . . D 2 -27.281 10.668 22.293 1 24.84 ? O3G DCP 1202 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 28 #