data_2JAS # _model_server_result.job_id rnvNyXBdtM97lYS44U96Uw _model_server_result.datetime_utc '2024-12-22 06:21:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2jas # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1201}' # _entry.id 2JAS # _exptl.entry_id 2JAS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 491.182 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "2'-DEOXYADENOSINE 5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 124.58 _cell.angle_gamma 90 _cell.entry_id 2JAS _cell.length_a 190.845 _cell.length_b 100.85 _cell.length_c 109.486 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2JAS _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,G,H,I,J,S,T 1 1 C,D,K,L,M,N,U,V 2 1 E,F,O,P,Q,R,W,X 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 J N N ? 2 L N N ? 2 M N N ? 2 O N N ? 2 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 G O2A DTP . A DTP 1201 1_555 H MG MG . A MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc2 G O2G DTP . A DTP 1201 1_555 H MG MG . A MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc3 G O1B DTP . A DTP 1201 1_555 H MG MG . A MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc4 I MG MG . B MG 1201 1_555 J O2G DTP . B DTP 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc5 I MG MG . B MG 1201 1_555 J O2A DTP . B DTP 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc6 I MG MG . B MG 1201 1_555 J O1B DTP . B DTP 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc7 K MG MG . C MG 1201 1_555 L O1B DTP . C DTP 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc8 K MG MG . C MG 1201 1_555 L O2A DTP . C DTP 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc9 K MG MG . C MG 1201 1_555 L O2G DTP . C DTP 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc10 M O2G DTP . D DTP 1201 1_555 N MG MG . D MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc11 M O1B DTP . D DTP 1201 1_555 N MG MG . D MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc12 M O2A DTP . D DTP 1201 1_555 N MG MG . D MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc13 O O2G DTP . E DTP 1201 1_555 P MG MG . E MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? metalc ? metalc14 O O2A DTP . E DTP 1201 1_555 P MG MG . E MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc15 O O1B DTP . E DTP 1201 1_555 P MG MG . E MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc16 Q O2A DTP . F DTP 1201 1_555 R MG MG . F MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc17 Q O1B DTP . F DTP 1201 1_555 R MG MG . F MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? metalc ? metalc18 Q O2G DTP . F DTP 1201 1_555 R MG MG . F MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? # _chem_comp.formula 'C10 H16 N5 O12 P3' _chem_comp.formula_weight 491.182 _chem_comp.id DTP _chem_comp.mon_nstd_flag . _chem_comp.name "2'-DEOXYADENOSINE 5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G DTP doub 70 n n PG O2G DTP sing 71 n n PG O3G DTP sing 72 n n PG O3B DTP sing 73 n n O2G HOG2 DTP sing 74 n n O3G HOG3 DTP sing 75 n n PB O1B DTP doub 76 n n PB O2B DTP sing 77 n n PB O3B DTP sing 78 n n PB O3A DTP sing 79 n n O2B HOB2 DTP sing 80 n n PA O1A DTP doub 81 n n PA O2A DTP sing 82 n n PA O3A DTP sing 83 n n PA O5' DTP sing 84 n n O2A HOA2 DTP sing 85 n n O5' C5' DTP sing 86 n n C5' C4' DTP sing 87 n n C5' "H5'1" DTP sing 88 n n C5' "H5'2" DTP sing 89 n n C4' O4' DTP sing 90 n n C4' C3' DTP sing 91 n n C4' H4' DTP sing 92 n n O4' C1' DTP sing 93 n n C3' O3' DTP sing 94 n n C3' C2' DTP sing 95 n n C3' H3' DTP sing 96 n n O3' HO3' DTP sing 97 n n C2' C1' DTP sing 98 n n C2' "H2'1" DTP sing 99 n n C2' "H2'2" DTP sing 100 n n C1' N9 DTP sing 101 n n C1' H1' DTP sing 102 n n N9 C8 DTP sing 103 n y N9 C4 DTP sing 104 n y C8 N7 DTP doub 105 n y C8 H8 DTP sing 106 n n N7 C5 DTP sing 107 n y C5 C6 DTP sing 108 n y C5 C4 DTP doub 109 n y C6 N6 DTP sing 110 n n C6 N1 DTP doub 111 n y N6 HN61 DTP sing 112 n n N6 HN62 DTP sing 113 n n N1 C2 DTP sing 114 n y C2 N3 DTP doub 115 n y C2 H2 DTP sing 116 n n N3 C4 DTP sing 117 n y # _atom_sites.entry_id 2JAS _atom_sites.fract_transf_matrix[1][1] 0.00524 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003612 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009916 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011093 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 DTP A 1 1201 1201 DTP DTP . H 3 MG A 1 1202 1202 MG MG . I 3 MG B 1 1201 1201 MG MG . J 2 DTP B 1 1202 1202 DTP DTP . K 3 MG C 1 1201 1201 MG MG . L 2 DTP C 1 1202 1202 DTP DTP . M 2 DTP D 1 1201 1201 DTP DTP . N 3 MG D 1 1202 1202 MG MG . O 2 DTP E 1 1201 1201 DTP DTP . P 3 MG E 1 1202 1202 MG MG . Q 2 DTP F 1 1201 1201 DTP DTP . R 3 MG F 1 1202 1202 MG MG . S 4 HOH A 1 2001 2001 HOH HOH . S 4 HOH A 2 2002 2002 HOH HOH . S 4 HOH A 3 2003 2003 HOH HOH . S 4 HOH A 4 2004 2004 HOH HOH . T 4 HOH B 1 2001 2001 HOH HOH . T 4 HOH B 2 2002 2002 HOH HOH . U 4 HOH C 1 2001 2001 HOH HOH . U 4 HOH C 2 2002 2002 HOH HOH . U 4 HOH C 3 2003 2003 HOH HOH . U 4 HOH C 4 2004 2004 HOH HOH . U 4 HOH C 5 2005 2005 HOH HOH . V 4 HOH D 1 2001 2001 HOH HOH . W 4 HOH E 1 2001 2001 HOH HOH . W 4 HOH E 2 2002 2002 HOH HOH . W 4 HOH E 3 2003 2003 HOH HOH . X 4 HOH F 1 2001 2001 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG DTP . . . G 2 -43.648 9.755 42.364 1 38.32 ? PG DTP 1201 A 1 HETATM 2 O O1G DTP . . . G 2 -42.484 8.853 42.743 1 38.19 ? O1G DTP 1201 A 1 HETATM 3 O O2G DTP . . . G 2 -43.264 11.189 42.066 1 34.32 ? O2G DTP 1201 A 1 HETATM 4 O O3G DTP . . . G 2 -44.888 9.64 43.217 1 37.51 ? O3G DTP 1201 A 1 HETATM 5 P PB DTP . . . G 2 -44.015 9.627 39.533 1 40.03 ? PB DTP 1201 A 1 HETATM 6 O O1B DTP . . . G 2 -42.842 10.575 39.413 1 37.78 ? O1B DTP 1201 A 1 HETATM 7 O O2B DTP . . . G 2 -44.175 8.471 38.581 1 38.46 ? O2B DTP 1201 A 1 HETATM 8 O O3B DTP . . . G 2 -44.118 8.998 41.017 1 39.19 ? O3B DTP 1201 A 1 HETATM 9 P PA DTP . . . G 2 -45.443 12.039 39.578 1 42.86 ? PA DTP 1201 A 1 HETATM 10 O O1A DTP . . . G 2 -46.71 12.405 40.305 1 42.71 ? O1A DTP 1201 A 1 HETATM 11 O O2A DTP . . . G 2 -44.119 12.599 40.04 1 44.39 ? O2A DTP 1201 A 1 HETATM 12 O O3A DTP . . . G 2 -45.391 10.447 39.509 1 41.2 ? O3A DTP 1201 A 1 HETATM 13 O O5' DTP . . . G 2 -45.529 12.354 38.004 1 44.75 ? O5' DTP 1201 A 1 HETATM 14 C C5' DTP . . . G 2 -46.416 13.344 37.534 1 45.51 ? C5' DTP 1201 A 1 HETATM 15 C C4' DTP . . . G 2 -45.653 14.525 36.985 1 45.63 ? C4' DTP 1201 A 1 HETATM 16 O O4' DTP . . . G 2 -46.32 14.875 35.782 1 46.18 ? O4' DTP 1201 A 1 HETATM 17 C C3' DTP . . . G 2 -45.815 15.731 37.89 1 45.89 ? C3' DTP 1201 A 1 HETATM 18 O O3' DTP . . . G 2 -44.759 16.655 37.627 1 46.87 ? O3' DTP 1201 A 1 HETATM 19 C C2' DTP . . . G 2 -47.103 16.403 37.469 1 45.45 ? C2' DTP 1201 A 1 HETATM 20 C C1' DTP . . . G 2 -47.186 16.004 36.006 1 45.45 ? C1' DTP 1201 A 1 HETATM 21 N N9 DTP . . . G 2 -48.566 15.677 35.573 1 45.17 ? N9 DTP 1201 A 1 HETATM 22 C C8 DTP . . . G 2 -49.066 14.452 35.325 1 44.66 ? C8 DTP 1201 A 1 HETATM 23 N N7 DTP . . . G 2 -50.357 14.542 34.917 1 45.06 ? N7 DTP 1201 A 1 HETATM 24 C C5 DTP . . . G 2 -50.685 15.849 34.896 1 44.87 ? C5 DTP 1201 A 1 HETATM 25 C C6 DTP . . . G 2 -51.878 16.658 34.559 1 44.8 ? C6 DTP 1201 A 1 HETATM 26 N N6 DTP . . . G 2 -53.024 16.066 34.155 1 45.1 ? N6 DTP 1201 A 1 HETATM 27 N N1 DTP . . . G 2 -51.789 18.006 34.673 1 45.02 ? N1 DTP 1201 A 1 HETATM 28 C C2 DTP . . . G 2 -50.662 18.618 35.08 1 45.09 ? C2 DTP 1201 A 1 HETATM 29 N N3 DTP . . . G 2 -49.542 17.944 35.405 1 45.1 ? N3 DTP 1201 A 1 HETATM 30 C C4 DTP . . . G 2 -49.497 16.591 35.33 1 44.88 ? C4 DTP 1201 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 341 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 30 #