data_2JAV # _model_server_result.job_id EAn-xSRLbtkceUZEikZADQ _model_server_result.datetime_utc '2025-03-04 15:16:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2jav # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1280}' # _entry.id 2JAV # _exptl.entry_id 2JAV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 329.781 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-[(Z)-(5-CHLORO-2-OXO-1,2-DIHYDRO-3H-INDOL-3-YLIDENE)METHYL]-N-(DIETHYLAMINO)ETHYL]-2,4-DIMETHYL-1H-PYRROLE-3-CARBOXAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.98 _cell.angle_gamma 90 _cell.entry_id 2JAV _cell.length_a 41.634 _cell.length_b 56.924 _cell.length_c 66.012 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2JAV _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H16 Cl N3 O2' _chem_comp.formula_weight 329.781 _chem_comp.id 5Z5 _chem_comp.mon_nstd_flag . _chem_comp.name 5-[(Z)-(5-CHLORO-2-OXO-1,2-DIHYDRO-3H-INDOL-3-YLIDENE)METHYL]-N-(DIETHYLAMINO)ETHYL]-2,4-DIMETHYL-1H-PYRROLE-3-CARBOXAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C17 N3 5Z5 sing 1 n n C17 H171 5Z5 sing 2 n n C17 H172 5Z5 sing 3 n n C17 H173 5Z5 sing 4 n n N3 C16 5Z5 sing 5 n n N3 H3 5Z5 sing 6 n n C16 O2 5Z5 doub 7 n n C16 C12 5Z5 sing 8 n n C12 C11 5Z5 sing 9 n y C12 C13 5Z5 doub 10 n y C11 C14 5Z5 sing 11 n n C11 C10 5Z5 doub 12 n y C14 H141 5Z5 sing 13 n n C14 H142 5Z5 sing 14 n n C14 H143 5Z5 sing 15 n n C13 C15 5Z5 sing 16 n n C13 N2 5Z5 sing 17 n y C15 H151 5Z5 sing 18 n n C15 H152 5Z5 sing 19 n n C15 H153 5Z5 sing 20 n n N2 C10 5Z5 sing 21 n y N2 H2 5Z5 sing 22 n n C10 C9 5Z5 sing 23 n n C9 C7 5Z5 doub 24 z n C9 H9 5Z5 sing 25 n n C7 C5 5Z5 sing 26 n n C7 C8 5Z5 sing 27 n n C5 C4 5Z5 doub 28 n y C5 C6 5Z5 sing 29 n y C4 C1 5Z5 sing 30 n y C4 H4 5Z5 sing 31 n n C1 CL1 5Z5 sing 32 n n C1 C2 5Z5 doub 33 n y C2 C3 5Z5 sing 34 n y C2 HA 5Z5 sing 35 n n C3 C6 5Z5 doub 36 n y C3 HB 5Z5 sing 37 n n C6 N1 5Z5 sing 38 n n N1 C8 5Z5 sing 39 n n N1 H1 5Z5 sing 40 n n C8 O1 5Z5 doub 41 n n # _atom_sites.entry_id 2JAV _atom_sites.fract_transf_matrix[1][1] 0.024019 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002516 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017567 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015232 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 5Z5 A 1 1280 1280 5Z5 5Z5 . C 3 HOH A 1 2001 2001 HOH HOH . C 3 HOH A 2 2002 2002 HOH HOH . C 3 HOH A 3 2003 2003 HOH HOH . C 3 HOH A 4 2004 2004 HOH HOH . C 3 HOH A 5 2005 2005 HOH HOH . C 3 HOH A 6 2006 2006 HOH HOH . C 3 HOH A 7 2007 2007 HOH HOH . C 3 HOH A 8 2008 2008 HOH HOH . C 3 HOH A 9 2009 2009 HOH HOH . C 3 HOH A 10 2010 2010 HOH HOH . C 3 HOH A 11 2011 2011 HOH HOH . C 3 HOH A 12 2012 2012 HOH HOH . C 3 HOH A 13 2013 2013 HOH HOH . C 3 HOH A 14 2014 2014 HOH HOH . C 3 HOH A 15 2015 2015 HOH HOH . C 3 HOH A 16 2016 2016 HOH HOH . C 3 HOH A 17 2017 2017 HOH HOH . C 3 HOH A 18 2018 2018 HOH HOH . C 3 HOH A 19 2019 2019 HOH HOH . C 3 HOH A 20 2020 2020 HOH HOH . C 3 HOH A 21 2021 2021 HOH HOH . C 3 HOH A 22 2022 2022 HOH HOH . C 3 HOH A 23 2023 2023 HOH HOH . C 3 HOH A 24 2024 2024 HOH HOH . C 3 HOH A 25 2025 2025 HOH HOH . C 3 HOH A 26 2026 2026 HOH HOH . C 3 HOH A 27 2027 2027 HOH HOH . C 3 HOH A 28 2028 2028 HOH HOH . C 3 HOH A 29 2029 2029 HOH HOH . C 3 HOH A 30 2030 2030 HOH HOH . C 3 HOH A 31 2031 2031 HOH HOH . C 3 HOH A 32 2032 2032 HOH HOH . C 3 HOH A 33 2033 2033 HOH HOH . C 3 HOH A 34 2034 2034 HOH HOH . C 3 HOH A 35 2035 2035 HOH HOH . C 3 HOH A 36 2036 2036 HOH HOH . C 3 HOH A 37 2037 2037 HOH HOH . C 3 HOH A 38 2038 2038 HOH HOH . C 3 HOH A 39 2039 2039 HOH HOH . C 3 HOH A 40 2040 2040 HOH HOH . C 3 HOH A 41 2041 2041 HOH HOH . C 3 HOH A 42 2042 2042 HOH HOH . C 3 HOH A 43 2043 2043 HOH HOH . C 3 HOH A 44 2044 2044 HOH HOH . C 3 HOH A 45 2045 2045 HOH HOH . C 3 HOH A 46 2046 2046 HOH HOH . C 3 HOH A 47 2047 2047 HOH HOH . C 3 HOH A 48 2048 2048 HOH HOH . C 3 HOH A 49 2049 2049 HOH HOH . C 3 HOH A 50 2050 2050 HOH HOH . C 3 HOH A 51 2051 2051 HOH HOH . C 3 HOH A 52 2052 2052 HOH HOH . C 3 HOH A 53 2053 2053 HOH HOH . C 3 HOH A 54 2054 2054 HOH HOH . C 3 HOH A 55 2055 2055 HOH HOH . C 3 HOH A 56 2056 2056 HOH HOH . C 3 HOH A 57 2057 2057 HOH HOH . C 3 HOH A 58 2058 2058 HOH HOH . C 3 HOH A 59 2059 2059 HOH HOH . C 3 HOH A 60 2060 2060 HOH HOH . C 3 HOH A 61 2061 2061 HOH HOH . C 3 HOH A 62 2062 2062 HOH HOH . C 3 HOH A 63 2063 2063 HOH HOH . C 3 HOH A 64 2064 2064 HOH HOH . C 3 HOH A 65 2065 2065 HOH HOH . C 3 HOH A 66 2066 2066 HOH HOH . C 3 HOH A 67 2067 2067 HOH HOH . C 3 HOH A 68 2068 2068 HOH HOH . C 3 HOH A 69 2069 2069 HOH HOH . C 3 HOH A 70 2070 2070 HOH HOH . C 3 HOH A 71 2071 2071 HOH HOH . C 3 HOH A 72 2072 2072 HOH HOH . C 3 HOH A 73 2073 2073 HOH HOH . C 3 HOH A 74 2074 2074 HOH HOH . C 3 HOH A 75 2075 2075 HOH HOH . C 3 HOH A 76 2076 2076 HOH HOH . C 3 HOH A 77 2077 2077 HOH HOH . C 3 HOH A 78 2078 2078 HOH HOH . C 3 HOH A 79 2079 2079 HOH HOH . C 3 HOH A 80 2080 2080 HOH HOH . C 3 HOH A 81 2081 2081 HOH HOH . C 3 HOH A 82 2082 2082 HOH HOH . C 3 HOH A 83 2083 2083 HOH HOH . C 3 HOH A 84 2084 2084 HOH HOH . C 3 HOH A 85 2085 2085 HOH HOH . C 3 HOH A 86 2086 2086 HOH HOH . C 3 HOH A 87 2087 2087 HOH HOH . C 3 HOH A 88 2088 2088 HOH HOH . C 3 HOH A 89 2089 2089 HOH HOH . C 3 HOH A 90 2090 2090 HOH HOH . C 3 HOH A 91 2091 2091 HOH HOH . C 3 HOH A 92 2092 2092 HOH HOH . C 3 HOH A 93 2093 2093 HOH HOH . C 3 HOH A 94 2094 2094 HOH HOH . C 3 HOH A 95 2095 2095 HOH HOH . C 3 HOH A 96 2096 2096 HOH HOH . C 3 HOH A 97 2097 2097 HOH HOH . C 3 HOH A 98 2098 2098 HOH HOH . C 3 HOH A 99 2099 2099 HOH HOH . C 3 HOH A 100 2100 2100 HOH HOH . C 3 HOH A 101 2101 2101 HOH HOH . C 3 HOH A 102 2102 2102 HOH HOH . C 3 HOH A 103 2103 2103 HOH HOH . C 3 HOH A 104 2104 2104 HOH HOH . C 3 HOH A 105 2105 2105 HOH HOH . C 3 HOH A 106 2106 2106 HOH HOH . C 3 HOH A 107 2107 2107 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C17 5Z5 . . . B 2 -6.901 14.763 21.683 1 29.18 ? C17 5Z5 1280 A 1 HETATM 2 N N3 5Z5 . . . B 2 -6.193 13.591 21.113 1 29.35 ? N3 5Z5 1280 A 1 HETATM 3 C C16 5Z5 . . . B 2 -6.335 12.369 21.595 1 29.11 ? C16 5Z5 1280 A 1 HETATM 4 O O2 5Z5 . . . B 2 -7.054 12.117 22.563 1 29.94 ? O2 5Z5 1280 A 1 HETATM 5 C C12 5Z5 . . . B 2 -5.529 11.254 20.888 1 28.3 ? C12 5Z5 1280 A 1 HETATM 6 C C11 5Z5 . . . B 2 -4.676 11.346 19.789 1 28.73 ? C11 5Z5 1280 A 1 HETATM 7 C C14 5Z5 . . . B 2 -4.334 12.644 18.999 1 28.33 ? C14 5Z5 1280 A 1 HETATM 8 C C13 5Z5 . . . B 2 -5.54 9.919 21.243 1 27.65 ? C13 5Z5 1280 A 1 HETATM 9 C C15 5Z5 . . . B 2 -6.321 9.286 22.387 1 28.22 ? C15 5Z5 1280 A 1 HETATM 10 N N2 5Z5 . . . B 2 -4.753 9.234 20.42 1 28.49 ? N2 5Z5 1280 A 1 HETATM 11 C C10 5Z5 . . . B 2 -4.201 10.056 19.52 1 28.35 ? C10 5Z5 1280 A 1 HETATM 12 C C9 5Z5 . . . B 2 -3.325 9.796 18.463 1 29.12 ? C9 5Z5 1280 A 1 HETATM 13 C C7 5Z5 . . . B 2 -2.79 8.54 18.125 1 28.67 ? C7 5Z5 1280 A 1 HETATM 14 C C5 5Z5 . . . B 2 -1.906 8.332 17.072 1 29.41 ? C5 5Z5 1280 A 1 HETATM 15 C C4 5Z5 . . . B 2 -1.33 9.17 16.119 1 29.48 ? C4 5Z5 1280 A 1 HETATM 16 C C1 5Z5 . . . B 2 -0.45 8.647 15.173 1 29.14 ? C1 5Z5 1280 A 1 HETATM 17 CL CL1 5Z5 . . . B 2 0.257 9.693 13.997 1 31.23 ? CL1 5Z5 1280 A 1 HETATM 18 C C2 5Z5 . . . B 2 -0.145 7.288 15.162 1 29.03 ? C2 5Z5 1280 A 1 HETATM 19 C C3 5Z5 . . . B 2 -0.726 6.457 16.121 1 29.18 ? C3 5Z5 1280 A 1 HETATM 20 C C6 5Z5 . . . B 2 -1.595 6.969 17.07 1 28.07 ? C6 5Z5 1280 A 1 HETATM 21 N N1 5Z5 . . . B 2 -2.261 6.38 18.062 1 28.56 ? N1 5Z5 1280 A 1 HETATM 22 C C8 5Z5 . . . B 2 -2.984 7.285 18.708 1 28.41 ? C8 5Z5 1280 A 1 HETATM 23 O O1 5Z5 . . . B 2 -3.693 7.002 19.671 1 28.95 ? O1 5Z5 1280 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 23 #