data_2JAX # _model_server_result.job_id XlvtSSR05xoK9V5uekTD2w _model_server_result.datetime_utc '2024-11-29 13:23:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2jax # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1296}' # _entry.id 2JAX # _exptl.entry_id 2JAX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2JAX _cell.length_a 102.134 _cell.length_b 102.134 _cell.length_c 158.068 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2JAX _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 64 2 2' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 11_555 -x+y,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASP 106 A ASP 106 1_555 A N MSE 107 A MSE 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C MSE 107 A MSE 107 1_555 A N SER 108 A SER 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale3 A C LEU 113 A LEU 113 1_555 A N MSE 114 A MSE 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 A C MSE 114 A MSE 114 1_555 A N VAL 115 A VAL 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale5 A C SER 214 A SER 214 1_555 A N MSE 215 A MSE 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale6 A C MSE 215 A MSE 215 1_555 A N ALA 216 A ALA 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale7 A NH1 ARG 264 A ARG 264 1_555 A CE MSE 272 A MSE 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.521 ? covale ? covale8 A C GLY 271 A GLY 271 1_555 A N MSE 272 A MSE 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale9 A C MSE 272 A MSE 272 1_555 A N LEU 273 A LEU 273 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale10 A OG SER 276 A SER 276 1_555 B O3G ATP . A ATP 1295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.636 ? covale ? covale11 B O1A ATP . A ATP 1295 1_555 D UNK UNX . A UNX 1297 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.413 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2JAX _atom_sites.fract_transf_matrix[1][1] 0.009791 _atom_sites.fract_transf_matrix[1][2] 0.005653 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011306 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006326 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ATP A 1 1295 1295 ATP ATP . C 2 ATP A 1 1296 1296 ATP ATP . D 3 UNX A 1 1297 1297 UNX UNX . E 3 UNX A 1 1298 1298 UNX UNX . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . C 2 11.477 35.695 4.212 1 37.86 ? PG ATP 1296 A 1 HETATM 2 O O1G ATP . . . C 2 12.304 36.583 3.315 1 39.97 ? O1G ATP 1296 A 1 HETATM 3 O O2G ATP . . . C 2 12.172 35.274 5.485 1 38.7 ? O2G ATP 1296 A 1 HETATM 4 O O3G ATP . . . C 2 10.761 34.576 3.494 1 35.89 ? O3G ATP 1296 A 1 HETATM 5 P PB ATP . . . C 2 10.491 37.597 6.008 1 34.57 ? PB ATP 1296 A 1 HETATM 6 O O1B ATP . . . C 2 9.997 38.982 5.664 1 33.24 ? O1B ATP 1296 A 1 HETATM 7 O O2B ATP . . . C 2 11.9 37.405 6.516 1 31.61 ? O2B ATP 1296 A 1 HETATM 8 O O3B ATP . . . C 2 10.287 36.655 4.719 1 35.97 ? O3B ATP 1296 A 1 HETATM 9 P PA ATP . . . C 2 9.801 35.527 7.756 1 39.99 ? PA ATP 1296 A 1 HETATM 10 O O1A ATP . . . C 2 11.3 35.348 7.785 1 39.53 ? O1A ATP 1296 A 1 HETATM 11 O O2A ATP . . . C 2 8.93 34.484 7.097 1 35.08 ? O2A ATP 1296 A 1 HETATM 12 O O3A ATP . . . C 2 9.478 36.952 7.08 1 35.14 ? O3A ATP 1296 A 1 HETATM 13 O O5' ATP . . . C 2 9.288 35.731 9.267 1 40.36 ? O5' ATP 1296 A 1 HETATM 14 C C5' ATP . . . C 2 8.032 35.198 9.683 1 40.06 ? C5' ATP 1296 A 1 HETATM 15 C C4' ATP . . . C 2 7.941 35.242 11.204 1 38.9 ? C4' ATP 1296 A 1 HETATM 16 O O4' ATP . . . C 2 8.592 34.093 11.754 1 36.6 ? O4' ATP 1296 A 1 HETATM 17 C C3' ATP . . . C 2 8.635 36.479 11.757 1 36.96 ? C3' ATP 1296 A 1 HETATM 18 O O3' ATP . . . C 2 7.7 37.25 12.519 1 34.6 ? O3' ATP 1296 A 1 HETATM 19 C C2' ATP . . . C 2 9.739 35.975 12.67 1 35.44 ? C2' ATP 1296 A 1 HETATM 20 O O2' ATP . . . C 2 9.497 36.429 14.006 1 35.92 ? O2' ATP 1296 A 1 HETATM 21 C C1' ATP . . . C 2 9.664 34.455 12.628 1 37.46 ? C1' ATP 1296 A 1 HETATM 22 N N9 ATP . . . C 2 10.941 33.911 12.099 1 39 ? N9 ATP 1296 A 1 HETATM 23 C C8 ATP . . . C 2 11.505 34.235 10.92 1 40.53 ? C8 ATP 1296 A 1 HETATM 24 N N7 ATP . . . C 2 12.669 33.562 10.733 1 39.57 ? N7 ATP 1296 A 1 HETATM 25 C C5 ATP . . . C 2 12.865 32.785 11.814 1 37.6 ? C5 ATP 1296 A 1 HETATM 26 C C6 ATP . . . C 2 13.897 31.821 12.264 1 37.52 ? C6 ATP 1296 A 1 HETATM 27 N N6 ATP . . . C 2 14.981 31.547 11.499 1 39.55 ? N6 ATP 1296 A 1 HETATM 28 N N1 ATP . . . C 2 13.719 31.225 13.464 1 39.52 ? N1 ATP 1296 A 1 HETATM 29 C C2 ATP . . . C 2 12.647 31.488 14.233 1 39.6 ? C2 ATP 1296 A 1 HETATM 30 N N3 ATP . . . C 2 11.673 32.35 13.888 1 39.23 ? N3 ATP 1296 A 1 HETATM 31 C C4 ATP . . . C 2 11.723 33.019 12.711 1 39.44 ? C4 ATP 1296 A 1 # _model_server_stats.io_time_ms 40 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #