data_2JB5
#
_model_server_result.job_id            W2wZLNnZMemneg3GtMmUkA 
_model_server_result.datetime_utc      '2025-07-20 01:04:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2jb5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1223}' 
#
_entry.id    2JB5 
#
_exptl.entry_id    2JB5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              771.918 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-{(1E,3Z,5E,7E)-7-[3,3-DIMETHYL-5-SULFO-1-(2-SULFOETHYL)-1,3-DIHYDRO-2H-INDOL-2-YLIDENE]-4-METHYLHEPTA-1,3,5-TRIEN-1-YL}-3,3-DIMETHYL-5-SULFO-1-(2-SULFOETHYL)-3H-INDOLIUM 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2JB5 
_cell.length_a            71.949 
_cell.length_b            98.48 
_cell.length_c            153.782 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2JB5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PQS 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 22 H CYS 22 1_555 A SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf2 A SG CYS 147 H CYS 147 1_555 A SG CYS 203 H CYS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf3 B SG CYS 22 L CYS 22 1_555 B SG CYS 90 L CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf4 B SG CYS 139 L CYS 139 1_555 B SG CYS 198 L CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
#
_chem_comp.formula           'C32 H39 N2 O12 S4 1' 
_chem_comp.formula_weight    771.918 
_chem_comp.id                T5C 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-{(1E,3Z,5E,7E)-7-[3,3-DIMETHYL-5-SULFO-1-(2-SULFOETHYL)-1,3-DIHYDRO-2H-INDOL-2-YLIDENE]-4-METHYLHEPTA-1,3,5-TRIEN-1-YL}-3,3-DIMETHYL-5-SULFO-1-(2-SULFOETHYL)-3H-INDOLIUM 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     TETRASULFOCYANINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O36 S35 T5C doub 290 n n 
S35 O37 T5C sing 291 n n 
S35 O38 T5C doub 292 n n 
S35 C13 T5C sing 293 n n 
O37 H37 T5C sing 294 n n 
C13 C12 T5C sing 295 n n 
C13 H131 T5C sing 296 n n 
C13 H132 T5C sing 297 n n 
C12 N1 T5C sing 298 n n 
C12 H121 T5C sing 299 n n 
C12 H122 T5C sing 300 n n 
N1 C9 T5C sing 301 n n 
N1 C2 T5C sing 302 n n 
C9 C8 T5C sing 303 n y 
C9 C4 T5C doub 304 n y 
C8 C7 T5C doub 305 n y 
C8 H8 T5C sing 306 n n 
C7 C6 T5C sing 307 n y 
C7 H7 T5C sing 308 n n 
C6 S39 T5C sing 309 n n 
C6 C5 T5C doub 310 n y 
S39 O41 T5C doub 311 n n 
S39 O40 T5C sing 312 n n 
S39 O42 T5C doub 313 n n 
O40 H40 T5C sing 314 n n 
C5 C4 T5C sing 315 n y 
C5 H5 T5C sing 316 n n 
C4 C3 T5C sing 317 n n 
C3 C11 T5C sing 318 n n 
C3 C10 T5C sing 319 n n 
C3 C2 T5C sing 320 n n 
C11 H111 T5C sing 321 n n 
C11 H112 T5C sing 322 n n 
C11 H113 T5C sing 323 n n 
C10 H101 T5C sing 324 n n 
C10 H102 T5C sing 325 n n 
C10 H103 T5C sing 326 n n 
C2 C14 T5C doub 327 e n 
C14 C15 T5C sing 328 n n 
C14 H14 T5C sing 329 n n 
C15 C16 T5C doub 330 e n 
C15 H15 T5C sing 331 n n 
C16 C17 T5C sing 332 n n 
C16 H16 T5C sing 333 n n 
C17 C34 T5C sing 334 n n 
C17 C18 T5C doub 335 e n 
C34 H341 T5C sing 336 n n 
C34 H342 T5C sing 337 n n 
C34 H343 T5C sing 338 n n 
C18 C19 T5C sing 339 n n 
C18 H18 T5C sing 340 n n 
C19 H191 T5C sing 341 n n 
C19 C20 T5C doub 342 n n 
C20 H201 T5C sing 343 n n 
C20 C22 T5C sing 344 n n 
C22 C23 T5C sing 345 n n 
C22 N21 T5C doub 346 n n 
C23 C31 T5C sing 347 n n 
C23 C30 T5C sing 348 n n 
C23 C24 T5C sing 349 n n 
C31 H311 T5C sing 350 n n 
C31 H312 T5C sing 351 n n 
C31 H313 T5C sing 352 n n 
C30 H301 T5C sing 353 n n 
C30 H302 T5C sing 354 n n 
C30 H303 T5C sing 355 n n 
C24 C25 T5C sing 356 n y 
C24 C29 T5C doub 357 n y 
C25 H25 T5C sing 358 n n 
C25 C26 T5C doub 359 n y 
C26 S47 T5C sing 360 n n 
C26 C27 T5C sing 361 n y 
S47 O48 T5C doub 362 n n 
S47 O50 T5C sing 363 n n 
S47 O49 T5C doub 364 n n 
O50 H50 T5C sing 365 n n 
C27 H27 T5C sing 366 n n 
C27 C28 T5C doub 367 n y 
C28 H28 T5C sing 368 n n 
C28 C29 T5C sing 369 n y 
C29 N21 T5C sing 370 n n 
N21 C32 T5C sing 371 n n 
C32 H321 T5C sing 372 n n 
C32 H322 T5C sing 373 n n 
C32 C33 T5C sing 374 n n 
C33 H331 T5C sing 375 n n 
C33 H332 T5C sing 376 n n 
C33 S43 T5C sing 377 n n 
S43 O46 T5C doub 378 n n 
S43 O44 T5C doub 379 n n 
S43 O45 T5C sing 380 n n 
O45 H45 T5C sing 381 n n 
#
_atom_sites.entry_id                     2JB5 
_atom_sites.fract_transf_matrix[1][1]    0.013899 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010154 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006503 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 T5C H 1 1223 1223 T5C T5C . 
D 4 HOH H 1 2001 2001 HOH HOH . 
D 4 HOH H 2 2002 2002 HOH HOH . 
D 4 HOH H 3 2003 2003 HOH HOH . 
D 4 HOH H 4 2004 2004 HOH HOH . 
D 4 HOH H 5 2005 2005 HOH HOH . 
D 4 HOH H 6 2006 2006 HOH HOH . 
D 4 HOH H 7 2007 2007 HOH HOH . 
D 4 HOH H 8 2008 2008 HOH HOH . 
D 4 HOH H 9 2009 2009 HOH HOH . 
D 4 HOH H 10 2010 2010 HOH HOH . 
D 4 HOH H 11 2011 2011 HOH HOH . 
D 4 HOH H 12 2012 2012 HOH HOH . 
D 4 HOH H 13 2013 2013 HOH HOH . 
D 4 HOH H 14 2014 2014 HOH HOH . 
D 4 HOH H 15 2015 2015 HOH HOH . 
D 4 HOH H 16 2016 2016 HOH HOH . 
D 4 HOH H 17 2017 2017 HOH HOH . 
D 4 HOH H 18 2018 2018 HOH HOH . 
D 4 HOH H 19 2019 2019 HOH HOH . 
D 4 HOH H 20 2020 2020 HOH HOH . 
D 4 HOH H 21 2021 2021 HOH HOH . 
D 4 HOH H 22 2022 2022 HOH HOH . 
D 4 HOH H 23 2023 2023 HOH HOH . 
D 4 HOH H 24 2024 2024 HOH HOH . 
D 4 HOH H 25 2025 2025 HOH HOH . 
D 4 HOH H 26 2026 2026 HOH HOH . 
D 4 HOH H 27 2027 2027 HOH HOH . 
E 4 HOH L 1 2001 2001 HOH HOH . 
E 4 HOH L 2 2002 2002 HOH HOH . 
E 4 HOH L 3 2003 2003 HOH HOH . 
E 4 HOH L 4 2004 2004 HOH HOH . 
E 4 HOH L 5 2005 2005 HOH HOH . 
E 4 HOH L 6 2006 2006 HOH HOH . 
E 4 HOH L 7 2007 2007 HOH HOH . 
E 4 HOH L 8 2008 2008 HOH HOH . 
E 4 HOH L 9 2009 2009 HOH HOH . 
E 4 HOH L 10 2010 2010 HOH HOH . 
E 4 HOH L 11 2011 2011 HOH HOH . 
E 4 HOH L 12 2012 2012 HOH HOH . 
E 4 HOH L 13 2013 2013 HOH HOH . 
E 4 HOH L 14 2014 2014 HOH HOH . 
E 4 HOH L 15 2015 2015 HOH HOH . 
E 4 HOH L 16 2016 2016 HOH HOH . 
E 4 HOH L 17 2017 2017 HOH HOH . 
E 4 HOH L 18 2018 2018 HOH HOH . 
E 4 HOH L 19 2019 2019 HOH HOH . 
E 4 HOH L 20 2020 2020 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O36 T5C . . . C 3 20.381 10.131 35.368 1 39.23 ? O36 T5C 1223 H 1 
HETATM 2 S S35 T5C . . . C 3 20.602 8.53 35.796 1 27.02 ? S35 T5C 1223 H 1 
HETATM 3 O O37 T5C . . . C 3 19.735 8.174 37.201 1 25.46 ? O37 T5C 1223 H 1 
HETATM 4 O O38 T5C . . . C 3 20.087 7.52 34.547 1 36.64 ? O38 T5C 1223 H 1 
HETATM 5 C C13 T5C . . . C 3 22.341 8.272 36.125 1 32.67 ? C13 T5C 1223 H 1 
HETATM 6 C C12 T5C . . . C 3 23.056 7.513 35.027 1 40.08 ? C12 T5C 1223 H 1 
HETATM 7 N N1 T5C . . . C 3 24.227 6.806 35.584 1 41.05 ? N1 T5C 1223 H 1 
HETATM 8 C C9 T5C . . . C 3 25.441 7.442 35.949 1 37.98 ? C9 T5C 1223 H 1 
HETATM 9 C C8 T5C . . . C 3 25.777 8.832 35.847 1 34.56 ? C8 T5C 1223 H 1 
HETATM 10 C C7 T5C . . . C 3 27.048 9.275 36.289 1 33.45 ? C7 T5C 1223 H 1 
HETATM 11 C C6 T5C . . . C 3 27.971 8.327 36.823 1 37.79 ? C6 T5C 1223 H 1 
HETATM 12 S S39 T5C . . . C 3 29.505 8.856 37.389 1 28.01 ? S39 T5C 1223 H 1 
HETATM 13 O O41 T5C . . . C 3 29.664 10.531 37.328 1 46.12 ? O41 T5C 1223 H 1 
HETATM 14 O O40 T5C . . . C 3 30.737 8.136 36.493 1 41.79 ? O40 T5C 1223 H 1 
HETATM 15 O O42 T5C . . . C 3 29.704 8.313 38.974 1 37.23 ? O42 T5C 1223 H 1 
HETATM 16 C C5 T5C . . . C 3 27.638 6.946 36.913 1 38.14 ? C5 T5C 1223 H 1 
HETATM 17 C C4 T5C . . . C 3 26.365 6.493 36.471 1 37.2 ? C4 T5C 1223 H 1 
HETATM 18 C C3 T5C . . . C 3 25.773 5.091 36.469 1 34.31 ? C3 T5C 1223 H 1 
HETATM 19 C C11 T5C . . . C 3 25.748 4.59 37.937 1 23.82 ? C11 T5C 1223 H 1 
HETATM 20 C C10 T5C . . . C 3 26.657 4.25 35.507 1 31.12 ? C10 T5C 1223 H 1 
HETATM 21 C C2 T5C . . . C 3 24.373 5.393 35.879 1 39.73 ? C2 T5C 1223 H 1 
HETATM 22 C C14 T5C . . . C 3 23.319 4.474 35.643 1 46.39 ? C14 T5C 1223 H 1 
HETATM 23 C C15 T5C . . . C 3 23.352 2.981 35.934 1 51.98 ? C15 T5C 1223 H 1 
HETATM 24 C C16 T5C . . . C 3 22.211 2.13 35.663 1 56.36 ? C16 T5C 1223 H 1 
HETATM 25 C C17 T5C . . . C 3 22.247 0.702 35.954 1 58.45 ? C17 T5C 1223 H 1 
HETATM 26 C C34 T5C . . . C 3 23.476 0.011 36.559 1 56.33 ? C34 T5C 1223 H 1 
HETATM 27 C C18 T5C . . . C 3 21.035 -0.021 35.63 1 67.24 ? C18 T5C 1223 H 1 
HETATM 28 C C19 T5C . . . C 3 20.899 -1.448 35.856 1 74.8 ? C19 T5C 1223 H 1 
HETATM 29 C C20 T5C . . . C 3 19.669 -2.103 35.51 1 76.17 ? C20 T5C 1223 H 1 
HETATM 30 C C22 T5C . . . C 3 19.441 -3.511 35.695 1 65.58 ? C22 T5C 1223 H 1 
#
_model_server_stats.io_time_ms              43 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           347 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           30 
#