data_2JB6 # _model_server_result.job_id KVZ1ZA8W8CRSzu8bRg1Jvg _model_server_result.datetime_utc '2025-01-09 12:09:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2jb6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1222}' # _entry.id 2JB6 # _exptl.entry_id 2JB6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 771.918 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-{(1E,3Z,5E,7E)-7-[3,3-DIMETHYL-5-SULFO-1-(2-SULFOETHYL)-1,3-DIHYDRO-2H-INDOL-2-YLIDENE]-4-METHYLHEPTA-1,3,5-TRIEN-1-YL}-3,3-DIMETHYL-5-SULFO-1-(2-SULFOETHYL)-3H-INDOLIUM _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2JB6 _cell.length_a 77.028 _cell.length_b 77.028 _cell.length_c 379.128 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2JB6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS tetrameric 4 software_defined_assembly 1 PQS tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,G,H 1 1,2 C,D,F,I,J 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 77.028 77.028 189.564 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 90 A CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf2 A SG CYS 139 A CYS 139 1_555 A SG CYS 198 A CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf3 B SG CYS 22 B CYS 22 1_555 B SG CYS 96 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf4 B SG CYS 147 B CYS 147 1_555 B SG CYS 203 B CYS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf5 C SG CYS 22 H CYS 22 1_555 C SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf6 C SG CYS 147 H CYS 147 1_555 C SG CYS 203 H CYS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf7 D SG CYS 22 L CYS 22 1_555 D SG CYS 90 L CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf8 D SG CYS 139 L CYS 139 1_555 D SG CYS 198 L CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? # _chem_comp.formula 'C32 H39 N2 O12 S4 1' _chem_comp.formula_weight 771.918 _chem_comp.id T5C _chem_comp.mon_nstd_flag . _chem_comp.name 2-{(1E,3Z,5E,7E)-7-[3,3-DIMETHYL-5-SULFO-1-(2-SULFOETHYL)-1,3-DIHYDRO-2H-INDOL-2-YLIDENE]-4-METHYLHEPTA-1,3,5-TRIEN-1-YL}-3,3-DIMETHYL-5-SULFO-1-(2-SULFOETHYL)-3H-INDOLIUM _chem_comp.type non-polymer _chem_comp.pdbx_synonyms TETRASULFOCYANINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O36 S35 T5C doub 290 n n S35 O37 T5C sing 291 n n S35 O38 T5C doub 292 n n S35 C13 T5C sing 293 n n O37 H37 T5C sing 294 n n C13 C12 T5C sing 295 n n C13 H131 T5C sing 296 n n C13 H132 T5C sing 297 n n C12 N1 T5C sing 298 n n C12 H121 T5C sing 299 n n C12 H122 T5C sing 300 n n N1 C9 T5C sing 301 n n N1 C2 T5C sing 302 n n C9 C8 T5C sing 303 n y C9 C4 T5C doub 304 n y C8 C7 T5C doub 305 n y C8 H8 T5C sing 306 n n C7 C6 T5C sing 307 n y C7 H7 T5C sing 308 n n C6 S39 T5C sing 309 n n C6 C5 T5C doub 310 n y S39 O41 T5C doub 311 n n S39 O40 T5C sing 312 n n S39 O42 T5C doub 313 n n O40 H40 T5C sing 314 n n C5 C4 T5C sing 315 n y C5 H5 T5C sing 316 n n C4 C3 T5C sing 317 n n C3 C11 T5C sing 318 n n C3 C10 T5C sing 319 n n C3 C2 T5C sing 320 n n C11 H111 T5C sing 321 n n C11 H112 T5C sing 322 n n C11 H113 T5C sing 323 n n C10 H101 T5C sing 324 n n C10 H102 T5C sing 325 n n C10 H103 T5C sing 326 n n C2 C14 T5C doub 327 e n C14 C15 T5C sing 328 n n C14 H14 T5C sing 329 n n C15 C16 T5C doub 330 e n C15 H15 T5C sing 331 n n C16 C17 T5C sing 332 n n C16 H16 T5C sing 333 n n C17 C34 T5C sing 334 n n C17 C18 T5C doub 335 e n C34 H341 T5C sing 336 n n C34 H342 T5C sing 337 n n C34 H343 T5C sing 338 n n C18 C19 T5C sing 339 n n C18 H18 T5C sing 340 n n C19 H191 T5C sing 341 n n C19 C20 T5C doub 342 n n C20 H201 T5C sing 343 n n C20 C22 T5C sing 344 n n C22 C23 T5C sing 345 n n C22 N21 T5C doub 346 n n C23 C31 T5C sing 347 n n C23 C30 T5C sing 348 n n C23 C24 T5C sing 349 n n C31 H311 T5C sing 350 n n C31 H312 T5C sing 351 n n C31 H313 T5C sing 352 n n C30 H301 T5C sing 353 n n C30 H302 T5C sing 354 n n C30 H303 T5C sing 355 n n C24 C25 T5C sing 356 n y C24 C29 T5C doub 357 n y C25 H25 T5C sing 358 n n C25 C26 T5C doub 359 n y C26 S47 T5C sing 360 n n C26 C27 T5C sing 361 n y S47 O48 T5C doub 362 n n S47 O50 T5C sing 363 n n S47 O49 T5C doub 364 n n O50 H50 T5C sing 365 n n C27 H27 T5C sing 366 n n C27 C28 T5C doub 367 n y C28 H28 T5C sing 368 n n C28 C29 T5C sing 369 n y C29 N21 T5C sing 370 n n N21 C32 T5C sing 371 n n C32 H321 T5C sing 372 n n C32 H322 T5C sing 373 n n C32 C33 T5C sing 374 n n C33 H331 T5C sing 375 n n C33 H332 T5C sing 376 n n C33 S43 T5C sing 377 n n S43 O46 T5C doub 378 n n S43 O44 T5C doub 379 n n S43 O45 T5C sing 380 n n O45 H45 T5C sing 381 n n # _atom_sites.entry_id 2JB6 _atom_sites.fract_transf_matrix[1][1] 0.012982 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012982 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002638 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 T5C B 1 1222 1222 T5C T5C . F 3 T5C H 1 1222 1222 T5C T5C . G 4 HOH A 1 2001 2001 HOH HOH . G 4 HOH A 2 2002 2002 HOH HOH . G 4 HOH A 3 2003 2003 HOH HOH . G 4 HOH A 4 2004 2004 HOH HOH . G 4 HOH A 5 2005 2005 HOH HOH . H 4 HOH B 1 2001 2001 HOH HOH . H 4 HOH B 2 2002 2002 HOH HOH . H 4 HOH B 3 2003 2003 HOH HOH . H 4 HOH B 4 2004 2004 HOH HOH . H 4 HOH B 5 2005 2005 HOH HOH . H 4 HOH B 6 2006 2006 HOH HOH . H 4 HOH B 7 2007 2007 HOH HOH . I 4 HOH H 1 2001 2001 HOH HOH . I 4 HOH H 2 2002 2002 HOH HOH . J 4 HOH L 1 2001 2001 HOH HOH . J 4 HOH L 2 2002 2002 HOH HOH . J 4 HOH L 3 2003 2003 HOH HOH . J 4 HOH L 4 2004 2004 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O36 T5C . . . E 3 91.943 -8.498 100.574 0.5 48.38 ? O36 T5C 1222 B 1 HETATM 2 S S35 T5C . . . E 3 91.751 -9.878 100.044 0.5 47.84 ? S35 T5C 1222 B 1 HETATM 3 O O37 T5C . . . E 3 90.884 -10.651 100.987 0.5 48.14 ? O37 T5C 1222 B 1 HETATM 4 O O38 T5C . . . E 3 91.082 -9.829 98.712 0.5 48.91 ? O38 T5C 1222 B 1 HETATM 5 C C13 T5C . . . E 3 93.378 -10.688 99.903 0.5 49.21 ? C13 T5C 1222 B 1 HETATM 6 C C12 T5C . . . E 3 94.201 -10.398 98.636 0.5 50.73 ? C12 T5C 1222 B 1 HETATM 7 N N1 T5C . . . E 3 95.178 -11.498 98.57 0.5 50.86 ? N1 T5C 1222 B 1 HETATM 8 C C9 T5C . . . E 3 96.347 -11.475 99.228 0.5 50.94 ? C9 T5C 1222 B 1 HETATM 9 C C8 T5C . . . E 3 96.929 -10.486 100.026 0.5 50.93 ? C8 T5C 1222 B 1 HETATM 10 C C7 T5C . . . E 3 98.195 -10.677 100.574 0.5 51.08 ? C7 T5C 1222 B 1 HETATM 11 C C6 T5C . . . E 3 98.9 -11.848 100.317 0.5 50.83 ? C6 T5C 1222 B 1 HETATM 12 S S39 T5C . . . E 3 100.476 -12.075 101.018 0.5 50.67 ? S39 T5C 1222 B 1 HETATM 13 O O41 T5C . . . E 3 101.156 -10.749 101.152 0.5 50.62 ? O41 T5C 1222 B 1 HETATM 14 O O40 T5C . . . E 3 100.328 -12.692 102.374 0.5 51.3 ? O40 T5C 1222 B 1 HETATM 15 O O42 T5C . . . E 3 101.293 -12.989 100.165 0.5 50.81 ? O42 T5C 1222 B 1 HETATM 16 C C5 T5C . . . E 3 98.337 -12.83 99.509 0.5 50.82 ? C5 T5C 1222 B 1 HETATM 17 C C4 T5C . . . E 3 97.068 -12.639 98.955 0.5 50.84 ? C4 T5C 1222 B 1 HETATM 18 C C3 T5C . . . E 3 96.201 -13.502 98.048 0.5 50.92 ? C3 T5C 1222 B 1 HETATM 19 C C11 T5C . . . E 3 96.96 -13.751 96.738 0.5 50.88 ? C11 T5C 1222 B 1 HETATM 20 C C10 T5C . . . E 3 95.857 -14.809 98.774 0.5 50.7 ? C10 T5C 1222 B 1 HETATM 21 C C2 T5C . . . E 3 94.972 -12.596 97.839 0.5 50.93 ? C2 T5C 1222 B 1 HETATM 22 C C14 T5C . . . E 3 93.876 -12.918 97.026 0.5 50.98 ? C14 T5C 1222 B 1 HETATM 23 C C15 T5C . . . E 3 93.747 -14.095 96.297 0.5 51.03 ? C15 T5C 1222 B 1 HETATM 24 C C16 T5C . . . E 3 92.619 -14.316 95.518 0.5 50.97 ? C16 T5C 1222 B 1 HETATM 25 C C17 T5C . . . E 3 92.466 -15.485 94.78 0.5 50.94 ? C17 T5C 1222 B 1 HETATM 26 C C34 T5C . . . E 3 93.543 -16.588 94.791 0.5 50.92 ? C34 T5C 1222 B 1 HETATM 27 C C18 T5C . . . E 3 91.311 -15.633 94.026 0.5 50.97 ? C18 T5C 1222 B 1 HETATM 28 C C19 T5C . . . E 3 91.099 -16.776 93.267 0.5 51.01 ? C19 T5C 1222 B 1 HETATM 29 C C20 T5C . . . E 3 89.932 -16.891 92.526 0.5 50.96 ? C20 T5C 1222 B 1 HETATM 30 C C22 T5C . . . E 3 89.585 -17.982 91.722 0.5 50.93 ? C22 T5C 1222 B 1 HETATM 31 C C23 T5C . . . E 3 90.444 -19.25 91.517 0.5 50.97 ? C23 T5C 1222 B 1 HETATM 32 C C31 T5C . . . E 3 90.681 -19.998 92.839 0.5 50.94 ? C31 T5C 1222 B 1 HETATM 33 C C30 T5C . . . E 3 91.769 -18.935 90.799 0.5 50.84 ? C30 T5C 1222 B 1 HETATM 34 C C24 T5C . . . E 3 89.545 -20.083 90.613 0.5 51 ? C24 T5C 1222 B 1 HETATM 35 C C25 T5C . . . E 3 89.675 -21.362 90.065 0.5 51.07 ? C25 T5C 1222 B 1 HETATM 36 C C26 T5C . . . E 3 88.663 -21.871 89.257 0.5 51.09 ? C26 T5C 1222 B 1 HETATM 37 S S47 T5C . . . E 3 88.783 -23.453 88.554 0.5 51 ? S47 T5C 1222 B 1 HETATM 38 O O48 T5C . . . E 3 88.874 -23.32 87.067 0.5 51.41 ? O48 T5C 1222 B 1 HETATM 39 O O50 T5C . . . E 3 90.008 -24.149 89.066 0.5 51.1 ? O50 T5C 1222 B 1 HETATM 40 O O49 T5C . . . E 3 87.556 -24.233 88.909 0.5 51.22 ? O49 T5C 1222 B 1 HETATM 41 C C27 T5C . . . E 3 87.53 -21.113 89.001 0.5 51.23 ? C27 T5C 1222 B 1 HETATM 42 C C28 T5C . . . E 3 87.399 -19.841 89.543 0.5 51.06 ? C28 T5C 1222 B 1 HETATM 43 C C29 T5C . . . E 3 88.415 -19.31 90.336 0.5 50.97 ? C29 T5C 1222 B 1 HETATM 44 N N21 T5C . . . E 3 88.484 -18.144 90.987 0.5 50.91 ? N21 T5C 1222 B 1 HETATM 45 C C32 T5C . . . E 3 87.424 -17.123 90.916 0.5 50.77 ? C32 T5C 1222 B 1 HETATM 46 C C33 T5C . . . E 3 87.808 -16.257 89.703 0.5 49.46 ? C33 T5C 1222 B 1 HETATM 47 S S43 T5C . . . E 3 86.917 -14.679 89.49 0.5 48.35 ? S43 T5C 1222 B 1 HETATM 48 O O46 T5C . . . E 3 86.833 -13.964 90.798 0.5 49.31 ? O46 T5C 1222 B 1 HETATM 49 O O44 T5C . . . E 3 85.544 -14.966 88.978 0.5 48.81 ? O44 T5C 1222 B 1 HETATM 50 O O45 T5C . . . E 3 87.647 -13.816 88.51 0.5 48.66 ? O45 T5C 1222 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 50 #