data_2JDC # _model_server_result.job_id nwGiZpCSMw0XT0l2AZzeig _model_server_result.datetime_utc '2024-11-25 03:46:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2jdc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1147}' # _entry.id 2JDC # _exptl.entry_id 2JDC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 783.534 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'OXIDIZED COENZYME A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.54 _cell.angle_gamma 90 _cell.entry_id 2JDC _cell.length_a 69.056 _cell.length_b 48.911 _cell.length_c 46.461 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2JDC _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H36 N7 O17 P3 S' _chem_comp.formula_weight 783.534 _chem_comp.id CAO _chem_comp.mon_nstd_flag . _chem_comp.name 'OXIDIZED COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A CAO sing 70 n y N1A C6A CAO doub 71 n y C2A N3A CAO doub 72 n y C2A H2A CAO sing 73 n n N3A C4A CAO sing 74 n y C4A C5A CAO doub 75 n y C4A N9A CAO sing 76 n y C5A C6A CAO sing 77 n y C5A N7A CAO sing 78 n y C6A N6A CAO sing 79 n n N6A H61A CAO sing 80 n n N6A H62A CAO sing 81 n n N7A C8A CAO doub 82 n y C8A N9A CAO sing 83 n y C8A H8A CAO sing 84 n n N9A C1B CAO sing 85 n n C1B C2B CAO sing 86 n n C1B O4B CAO sing 87 n n C1B H1B CAO sing 88 n n C2B O2B CAO sing 89 n n C2B C3B CAO sing 90 n n C2B H2B CAO sing 91 n n O2B HO2A CAO sing 92 n n C3B O3B CAO sing 93 n n C3B C4B CAO sing 94 n n C3B H3B CAO sing 95 n n O3B P3B CAO sing 96 n n P3B O7A CAO doub 97 n n P3B O8A CAO sing 98 n n P3B O9A CAO sing 99 n n O8A HOA8 CAO sing 100 n n O9A HOA9 CAO sing 101 n n C4B O4B CAO sing 102 n n C4B C5B CAO sing 103 n n C4B H4B CAO sing 104 n n C5B O5B CAO sing 105 n n C5B H51A CAO sing 106 n n C5B H52A CAO sing 107 n n O5B P1A CAO sing 108 n n P1A O1A CAO doub 109 n n P1A O2A CAO sing 110 n n P1A O3A CAO sing 111 n n O2A HOA2 CAO sing 112 n n O3A P2A CAO sing 113 n n P2A O4A CAO doub 114 n n P2A O5A CAO sing 115 n n P2A O6A CAO sing 116 n n O5A HOA5 CAO sing 117 n n O6A CCP CAO sing 118 n n CBP CCP CAO sing 119 n n CBP CDP CAO sing 120 n n CBP CEP CAO sing 121 n n CBP CAP CAO sing 122 n n CCP H121 CAO sing 123 n n CCP H122 CAO sing 124 n n CDP H131 CAO sing 125 n n CDP H132 CAO sing 126 n n CDP H133 CAO sing 127 n n CEP H141 CAO sing 128 n n CEP H142 CAO sing 129 n n CEP H143 CAO sing 130 n n CAP OAP CAO sing 131 n n CAP C9P CAO sing 132 n n CAP H10 CAO sing 133 n n OAP HO1 CAO sing 134 n n C9P O9P CAO doub 135 n n C9P N8P CAO sing 136 n n N8P C7P CAO sing 137 n n N8P HN8 CAO sing 138 n n C7P C6P CAO sing 139 n n C7P H71 CAO sing 140 n n C7P H72 CAO sing 141 n n C6P C5P CAO sing 142 n n C6P H61 CAO sing 143 n n C6P H62 CAO sing 144 n n C5P O5P CAO doub 145 n n C5P N4P CAO sing 146 n n N4P C3P CAO sing 147 n n N4P HN4 CAO sing 148 n n C3P C2P CAO sing 149 n n C3P H31 CAO sing 150 n n C3P H32 CAO sing 151 n n C2P S1P CAO sing 152 n n C2P H21 CAO sing 153 n n C2P H22 CAO sing 154 n n S1P O1P CAO sing 155 n n O1P HOS1 CAO sing 156 n n # _atom_sites.entry_id 2JDC _atom_sites.fract_transf_matrix[1][1] 0.014481 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003487 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020445 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022139 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CAO A 1 1147 1147 CAO CAO . C 3 SO4 A 1 1148 1148 SO4 SO4 . D 4 HOH A 1 2001 2001 HOH HOH . D 4 HOH A 2 2002 2002 HOH HOH . D 4 HOH A 3 2003 2003 HOH HOH . D 4 HOH A 4 2004 2004 HOH HOH . D 4 HOH A 5 2005 2005 HOH HOH . D 4 HOH A 6 2006 2006 HOH HOH . D 4 HOH A 7 2007 2007 HOH HOH . D 4 HOH A 8 2008 2008 HOH HOH . D 4 HOH A 9 2009 2009 HOH HOH . D 4 HOH A 10 2010 2010 HOH HOH . D 4 HOH A 11 2011 2011 HOH HOH . D 4 HOH A 12 2012 2012 HOH HOH . D 4 HOH A 13 2013 2013 HOH HOH . D 4 HOH A 14 2014 2014 HOH HOH . D 4 HOH A 15 2015 2015 HOH HOH . D 4 HOH A 16 2016 2016 HOH HOH . D 4 HOH A 17 2017 2017 HOH HOH . D 4 HOH A 18 2018 2018 HOH HOH . D 4 HOH A 19 2019 2019 HOH HOH . D 4 HOH A 20 2020 2020 HOH HOH . D 4 HOH A 21 2021 2021 HOH HOH . D 4 HOH A 22 2022 2022 HOH HOH . D 4 HOH A 23 2023 2023 HOH HOH . D 4 HOH A 24 2024 2024 HOH HOH . D 4 HOH A 25 2025 2025 HOH HOH . D 4 HOH A 26 2026 2026 HOH HOH . D 4 HOH A 27 2027 2027 HOH HOH . D 4 HOH A 28 2028 2028 HOH HOH . D 4 HOH A 29 2029 2029 HOH HOH . D 4 HOH A 30 2030 2030 HOH HOH . D 4 HOH A 31 2031 2031 HOH HOH . D 4 HOH A 32 2032 2032 HOH HOH . D 4 HOH A 33 2033 2033 HOH HOH . D 4 HOH A 34 2034 2034 HOH HOH . D 4 HOH A 35 2035 2035 HOH HOH . D 4 HOH A 36 2036 2036 HOH HOH . D 4 HOH A 37 2037 2037 HOH HOH . D 4 HOH A 38 2038 2038 HOH HOH . D 4 HOH A 39 2039 2039 HOH HOH . D 4 HOH A 40 2040 2040 HOH HOH . D 4 HOH A 41 2041 2041 HOH HOH . D 4 HOH A 42 2042 2042 HOH HOH . D 4 HOH A 43 2043 2043 HOH HOH . D 4 HOH A 44 2044 2044 HOH HOH . D 4 HOH A 45 2045 2045 HOH HOH . D 4 HOH A 46 2046 2046 HOH HOH . D 4 HOH A 47 2047 2047 HOH HOH . D 4 HOH A 48 2048 2048 HOH HOH . D 4 HOH A 49 2049 2049 HOH HOH . D 4 HOH A 50 2050 2050 HOH HOH . D 4 HOH A 51 2051 2051 HOH HOH . D 4 HOH A 52 2052 2052 HOH HOH . D 4 HOH A 53 2053 2053 HOH HOH . D 4 HOH A 54 2054 2054 HOH HOH . D 4 HOH A 55 2055 2055 HOH HOH . D 4 HOH A 56 2056 2056 HOH HOH . D 4 HOH A 57 2057 2057 HOH HOH . D 4 HOH A 58 2058 2058 HOH HOH . D 4 HOH A 59 2059 2059 HOH HOH . D 4 HOH A 60 2060 2060 HOH HOH . D 4 HOH A 61 2061 2061 HOH HOH . D 4 HOH A 62 2062 2062 HOH HOH . D 4 HOH A 63 2063 2063 HOH HOH . D 4 HOH A 64 2064 2064 HOH HOH . D 4 HOH A 65 2065 2065 HOH HOH . D 4 HOH A 66 2066 2066 HOH HOH . D 4 HOH A 67 2067 2067 HOH HOH . D 4 HOH A 68 2068 2068 HOH HOH . D 4 HOH A 69 2069 2069 HOH HOH . D 4 HOH A 70 2070 2070 HOH HOH . D 4 HOH A 71 2071 2071 HOH HOH . D 4 HOH A 72 2072 2072 HOH HOH . D 4 HOH A 73 2073 2073 HOH HOH . D 4 HOH A 74 2074 2074 HOH HOH . D 4 HOH A 75 2075 2075 HOH HOH . D 4 HOH A 76 2076 2076 HOH HOH . D 4 HOH A 77 2077 2077 HOH HOH . D 4 HOH A 78 2078 2078 HOH HOH . D 4 HOH A 79 2079 2079 HOH HOH . D 4 HOH A 80 2080 2080 HOH HOH . D 4 HOH A 81 2081 2081 HOH HOH . D 4 HOH A 82 2082 2082 HOH HOH . D 4 HOH A 83 2083 2083 HOH HOH . D 4 HOH A 84 2084 2084 HOH HOH . D 4 HOH A 85 2085 2085 HOH HOH . D 4 HOH A 86 2086 2086 HOH HOH . D 4 HOH A 87 2087 2087 HOH HOH . D 4 HOH A 88 2088 2088 HOH HOH . D 4 HOH A 89 2089 2089 HOH HOH . D 4 HOH A 90 2090 2090 HOH HOH . D 4 HOH A 91 2091 2091 HOH HOH . D 4 HOH A 92 2092 2092 HOH HOH . D 4 HOH A 93 2093 2093 HOH HOH . D 4 HOH A 94 2094 2094 HOH HOH . D 4 HOH A 95 2095 2095 HOH HOH . D 4 HOH A 96 2096 2096 HOH HOH . D 4 HOH A 97 2097 2097 HOH HOH . D 4 HOH A 98 2098 2098 HOH HOH . D 4 HOH A 99 2099 2099 HOH HOH . D 4 HOH A 100 2100 2100 HOH HOH . D 4 HOH A 101 2101 2101 HOH HOH . D 4 HOH A 102 2102 2102 HOH HOH . D 4 HOH A 103 2103 2103 HOH HOH . D 4 HOH A 104 2104 2104 HOH HOH . D 4 HOH A 105 2105 2105 HOH HOH . D 4 HOH A 106 2106 2106 HOH HOH . D 4 HOH A 107 2107 2107 HOH HOH . D 4 HOH A 108 2108 2108 HOH HOH . D 4 HOH A 109 2109 2109 HOH HOH . D 4 HOH A 110 2110 2110 HOH HOH . D 4 HOH A 111 2111 2111 HOH HOH . D 4 HOH A 112 2112 2112 HOH HOH . D 4 HOH A 113 2113 2113 HOH HOH . D 4 HOH A 114 2114 2114 HOH HOH . D 4 HOH A 115 2115 2115 HOH HOH . D 4 HOH A 116 2116 2116 HOH HOH . D 4 HOH A 117 2117 2117 HOH HOH . D 4 HOH A 118 2118 2118 HOH HOH . D 4 HOH A 119 2119 2119 HOH HOH . D 4 HOH A 120 2120 2120 HOH HOH . D 4 HOH A 121 2121 2121 HOH HOH . D 4 HOH A 122 2122 2122 HOH HOH . D 4 HOH A 123 2123 2123 HOH HOH . D 4 HOH A 124 2124 2124 HOH HOH . D 4 HOH A 125 2125 2125 HOH HOH . D 4 HOH A 126 2126 2126 HOH HOH . D 4 HOH A 127 2127 2127 HOH HOH . D 4 HOH A 128 2128 2128 HOH HOH . D 4 HOH A 129 2129 2129 HOH HOH . D 4 HOH A 130 2130 2130 HOH HOH . D 4 HOH A 131 2131 2131 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A CAO . . . B 2 9.922 6.559 8.92 1 18.53 ? N1A CAO 1147 A 1 HETATM 2 C C2A CAO . . . B 2 8.918 5.776 8.47 1 18.44 ? C2A CAO 1147 A 1 HETATM 3 N N3A CAO . . . B 2 8.995 5.037 7.345 1 18.81 ? N3A CAO 1147 A 1 HETATM 4 C C4A CAO . . . B 2 10.119 5.081 6.58 1 18.12 ? C4A CAO 1147 A 1 HETATM 5 C C5A CAO . . . B 2 11.237 5.927 6.986 1 18.04 ? C5A CAO 1147 A 1 HETATM 6 C C6A CAO . . . B 2 11.091 6.679 8.239 1 17.43 ? C6A CAO 1147 A 1 HETATM 7 N N6A CAO . . . B 2 12.111 7.463 8.647 1 18.79 ? N6A CAO 1147 A 1 HETATM 8 N N7A CAO . . . B 2 12.215 5.78 6.073 1 18.25 ? N7A CAO 1147 A 1 HETATM 9 C C8A CAO . . . B 2 11.757 4.903 5.147 1 17.98 ? C8A CAO 1147 A 1 HETATM 10 N N9A CAO . . . B 2 10.497 4.505 5.452 1 18.6 ? N9A CAO 1147 A 1 HETATM 11 C C1B CAO . . . B 2 9.644 3.551 4.721 1 19.25 ? C1B CAO 1147 A 1 HETATM 12 C C2B CAO . . . B 2 9.604 3.721 3.212 1 20.12 ? C2B CAO 1147 A 1 HETATM 13 O O2B CAO . . . B 2 8.564 4.648 2.821 1 23.92 ? O2B CAO 1147 A 1 HETATM 14 C C3B CAO . . . B 2 9.321 2.298 2.776 1 20.74 ? C3B CAO 1147 A 1 HETATM 15 O O3B CAO . . . B 2 7.919 2.012 2.885 1 23.22 ? O3B CAO 1147 A 1 HETATM 16 P P3B CAO . . . B 2 7.036 1.482 1.634 1 24.01 ? P3B CAO 1147 A 1 HETATM 17 O O7A CAO . . . B 2 7.587 0.138 1.219 1 22.81 ? O7A CAO 1147 A 1 HETATM 18 O O8A CAO . . . B 2 5.649 1.39 2.241 1 24.55 ? O8A CAO 1147 A 1 HETATM 19 O O9A CAO . . . B 2 7.185 2.541 0.562 1 24.27 ? O9A CAO 1147 A 1 HETATM 20 C C4B CAO . . . B 2 10.067 1.439 3.79 1 18.5 ? C4B CAO 1147 A 1 HETATM 21 O O4B CAO . . . B 2 10.115 2.232 4.983 1 18.9 ? O4B CAO 1147 A 1 HETATM 22 C C5B CAO . . . B 2 11.47 1.061 3.324 1 17.18 ? C5B CAO 1147 A 1 HETATM 23 O O5B CAO . . . B 2 12.251 2.213 3.001 1 13.41 ? O5B CAO 1147 A 1 HETATM 24 P P1A CAO . . . B 2 13.636 2.005 2.193 1 12.89 ? P1A CAO 1147 A 1 HETATM 25 O O1A CAO . . . B 2 13.54 2.698 0.85 1 13.07 ? O1A CAO 1147 A 1 HETATM 26 O O2A CAO . . . B 2 14.036 0.558 2.215 1 12.4 ? O2A CAO 1147 A 1 HETATM 27 O O3A CAO . . . B 2 14.595 2.837 3.179 1 11.78 ? O3A CAO 1147 A 1 HETATM 28 P P2A CAO . . . B 2 15.642 3.993 2.81 1 11.57 ? P2A CAO 1147 A 1 HETATM 29 O O4A CAO . . . B 2 14.896 5.23 2.389 1 12.94 ? O4A CAO 1147 A 1 HETATM 30 O O5A CAO . . . B 2 16.71 3.487 1.884 1 11.81 ? O5A CAO 1147 A 1 HETATM 31 O O6A CAO . . . B 2 16.317 4.215 4.241 1 12.1 ? O6A CAO 1147 A 1 HETATM 32 C CBP CAO . . . B 2 16.436 5.241 6.44 1 10.76 ? CBP CAO 1147 A 1 HETATM 33 C CCP CAO . . . B 2 15.588 4.45 5.449 1 10.58 ? CCP CAO 1147 A 1 HETATM 34 C CDP CAO . . . B 2 17.759 4.492 6.644 1 10.3 ? CDP CAO 1147 A 1 HETATM 35 C CEP CAO . . . B 2 15.668 5.313 7.761 1 11.9 ? CEP CAO 1147 A 1 HETATM 36 C CAP CAO . . . B 2 16.678 6.668 5.89 1 11.19 ? CAP CAO 1147 A 1 HETATM 37 O OAP CAO . . . B 2 15.44 7.404 5.859 1 14.79 ? OAP CAO 1147 A 1 HETATM 38 C C9P CAO . . . B 2 17.688 7.446 6.696 1 11.8 ? C9P CAO 1147 A 1 HETATM 39 O O9P CAO . . . B 2 18.887 7.303 6.522 1 11 ? O9P CAO 1147 A 1 HETATM 40 N N8P CAO . . . B 2 17.235 8.33 7.595 1 12.96 ? N8P CAO 1147 A 1 HETATM 41 C C7P CAO . . . B 2 18.101 9.183 8.371 1 12.8 ? C7P CAO 1147 A 1 HETATM 42 C C6P CAO . . . B 2 19.088 8.442 9.268 1 13.97 ? C6P CAO 1147 A 1 HETATM 43 C C5P CAO . . . B 2 18.372 7.452 10.167 1 15.16 ? C5P CAO 1147 A 1 HETATM 44 O O5P CAO . . . B 2 17.44 7.794 10.886 1 16.61 ? O5P CAO 1147 A 1 HETATM 45 N N4P CAO . . . B 2 18.828 6.205 10.153 1 14.16 ? N4P CAO 1147 A 1 HETATM 46 C C3P CAO . . . B 2 18.288 5.152 10.992 1 14.49 ? C3P CAO 1147 A 1 HETATM 47 C C2P CAO . . . B 2 19.21 4.943 12.187 1 16.35 ? C2P CAO 1147 A 1 HETATM 48 S S1P CAO . . . B 2 18.555 3.869 13.42 1 15.68 ? S1P CAO 1147 A 1 HETATM 49 O O1P CAO . . . B 2 19.813 4.135 14.642 1 26.06 ? O1P CAO 1147 A 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 49 #