data_2JDD # _model_server_result.job_id zRWUhPPqtKrva_FwC19O4A _model_server_result.datetime_utc '2024-11-29 10:24:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2jdd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1147}' # _entry.id 2JDD # _exptl.entry_id 2JDD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 809.571 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETYL COENZYME *A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.57 _cell.angle_gamma 90 _cell.entry_id 2JDD _cell.length_a 69.828 _cell.length_b 48.448 _cell.length_c 46.798 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2JDD _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C23 H38 N7 O17 P3 S' _chem_comp.formula_weight 809.571 _chem_comp.id ACO _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETYL COENZYME *A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A ACO sing 18 n y N1A C6A ACO doub 19 n y C2A N3A ACO doub 20 n y C2A H2A ACO sing 21 n n N3A C4A ACO sing 22 n y C4A C5A ACO doub 23 n y C4A N9A ACO sing 24 n y C5A C6A ACO sing 25 n y C5A N7A ACO sing 26 n y C6A N6A ACO sing 27 n n N6A H61A ACO sing 28 n n N6A H62A ACO sing 29 n n N7A C8A ACO doub 30 n y C8A N9A ACO sing 31 n y C8A H8A ACO sing 32 n n N9A C1B ACO sing 33 n n C1B C2B ACO sing 34 n n C1B O4B ACO sing 35 n n C1B H1B ACO sing 36 n n C2B O2B ACO sing 37 n n C2B C3B ACO sing 38 n n C2B H2B ACO sing 39 n n O2B HO2A ACO sing 40 n n C3B O3B ACO sing 41 n n C3B C4B ACO sing 42 n n C3B H3B ACO sing 43 n n O3B P3B ACO sing 44 n n P3B O7A ACO doub 45 n n P3B O8A ACO sing 46 n n P3B O9A ACO sing 47 n n O8A HOA8 ACO sing 48 n n O9A HOA9 ACO sing 49 n n C4B O4B ACO sing 50 n n C4B C5B ACO sing 51 n n C4B H4B ACO sing 52 n n C5B O5B ACO sing 53 n n C5B H51A ACO sing 54 n n C5B H52A ACO sing 55 n n O5B P1A ACO sing 56 n n P1A O1A ACO doub 57 n n P1A O2A ACO sing 58 n n P1A O3A ACO sing 59 n n O2A HOA2 ACO sing 60 n n O3A P2A ACO sing 61 n n P2A O4A ACO doub 62 n n P2A O5A ACO sing 63 n n P2A O6A ACO sing 64 n n O5A HOA5 ACO sing 65 n n O6A CCP ACO sing 66 n n CBP CCP ACO sing 67 n n CBP CDP ACO sing 68 n n CBP CEP ACO sing 69 n n CBP CAP ACO sing 70 n n CCP H121 ACO sing 71 n n CCP H122 ACO sing 72 n n CDP H131 ACO sing 73 n n CDP H132 ACO sing 74 n n CDP H133 ACO sing 75 n n CEP H141 ACO sing 76 n n CEP H142 ACO sing 77 n n CEP H143 ACO sing 78 n n CAP OAP ACO sing 79 n n CAP C9P ACO sing 80 n n CAP H10 ACO sing 81 n n OAP HO1 ACO sing 82 n n C9P O9P ACO doub 83 n n C9P N8P ACO sing 84 n n N8P C7P ACO sing 85 n n N8P HN8 ACO sing 86 n n C7P C6P ACO sing 87 n n C7P H71 ACO sing 88 n n C7P H72 ACO sing 89 n n C6P C5P ACO sing 90 n n C6P H61 ACO sing 91 n n C6P H62 ACO sing 92 n n C5P O5P ACO doub 93 n n C5P N4P ACO sing 94 n n N4P C3P ACO sing 95 n n N4P HN4 ACO sing 96 n n C3P C2P ACO sing 97 n n C3P H31 ACO sing 98 n n C3P H32 ACO sing 99 n n C2P S1P ACO sing 100 n n C2P H21 ACO sing 101 n n C2P H22 ACO sing 102 n n S1P C ACO sing 103 n n C O ACO doub 104 n n C CH3 ACO sing 105 n n CH3 HH31 ACO sing 106 n n CH3 HH32 ACO sing 107 n n CH3 HH33 ACO sing 108 n n # _atom_sites.entry_id 2JDD _atom_sites.fract_transf_matrix[1][1] 0.014321 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003457 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020641 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021982 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACO A 1 1147 1147 ACO ACO . C 3 3PG A 1 1148 1148 3PG 3PG . D 4 SO4 A 1 1149 1149 SO4 SO4 . E 5 HOH A 1 2001 2001 HOH HOH . E 5 HOH A 2 2002 2002 HOH HOH . E 5 HOH A 3 2003 2003 HOH HOH . E 5 HOH A 4 2004 2004 HOH HOH . E 5 HOH A 5 2005 2005 HOH HOH . E 5 HOH A 6 2006 2006 HOH HOH . E 5 HOH A 7 2007 2007 HOH HOH . E 5 HOH A 8 2008 2008 HOH HOH . E 5 HOH A 9 2009 2009 HOH HOH . E 5 HOH A 10 2010 2010 HOH HOH . E 5 HOH A 11 2011 2011 HOH HOH . E 5 HOH A 12 2012 2012 HOH HOH . E 5 HOH A 13 2013 2013 HOH HOH . E 5 HOH A 14 2014 2014 HOH HOH . E 5 HOH A 15 2015 2015 HOH HOH . E 5 HOH A 16 2016 2016 HOH HOH . E 5 HOH A 17 2017 2017 HOH HOH . E 5 HOH A 18 2018 2018 HOH HOH . E 5 HOH A 19 2019 2019 HOH HOH . E 5 HOH A 20 2020 2020 HOH HOH . E 5 HOH A 21 2021 2021 HOH HOH . E 5 HOH A 22 2022 2022 HOH HOH . E 5 HOH A 23 2023 2023 HOH HOH . E 5 HOH A 24 2024 2024 HOH HOH . E 5 HOH A 25 2025 2025 HOH HOH . E 5 HOH A 26 2026 2026 HOH HOH . E 5 HOH A 27 2027 2027 HOH HOH . E 5 HOH A 28 2028 2028 HOH HOH . E 5 HOH A 29 2029 2029 HOH HOH . E 5 HOH A 30 2030 2030 HOH HOH . E 5 HOH A 31 2031 2031 HOH HOH . E 5 HOH A 32 2032 2032 HOH HOH . E 5 HOH A 33 2033 2033 HOH HOH . E 5 HOH A 34 2034 2034 HOH HOH . E 5 HOH A 35 2035 2035 HOH HOH . E 5 HOH A 36 2036 2036 HOH HOH . E 5 HOH A 37 2037 2037 HOH HOH . E 5 HOH A 38 2038 2038 HOH HOH . E 5 HOH A 39 2039 2039 HOH HOH . E 5 HOH A 40 2040 2040 HOH HOH . E 5 HOH A 41 2041 2041 HOH HOH . E 5 HOH A 42 2042 2042 HOH HOH . E 5 HOH A 43 2043 2043 HOH HOH . E 5 HOH A 44 2044 2044 HOH HOH . E 5 HOH A 45 2045 2045 HOH HOH . E 5 HOH A 46 2046 2046 HOH HOH . E 5 HOH A 47 2047 2047 HOH HOH . E 5 HOH A 48 2048 2048 HOH HOH . E 5 HOH A 49 2049 2049 HOH HOH . E 5 HOH A 50 2050 2050 HOH HOH . E 5 HOH A 51 2051 2051 HOH HOH . E 5 HOH A 52 2052 2052 HOH HOH . E 5 HOH A 53 2053 2053 HOH HOH . E 5 HOH A 54 2054 2054 HOH HOH . E 5 HOH A 55 2055 2055 HOH HOH . E 5 HOH A 56 2056 2056 HOH HOH . E 5 HOH A 57 2057 2057 HOH HOH . E 5 HOH A 58 2058 2058 HOH HOH . E 5 HOH A 59 2059 2059 HOH HOH . E 5 HOH A 60 2060 2060 HOH HOH . E 5 HOH A 61 2061 2061 HOH HOH . E 5 HOH A 62 2062 2062 HOH HOH . E 5 HOH A 63 2063 2063 HOH HOH . E 5 HOH A 64 2064 2064 HOH HOH . E 5 HOH A 65 2065 2065 HOH HOH . E 5 HOH A 66 2066 2066 HOH HOH . E 5 HOH A 67 2067 2067 HOH HOH . E 5 HOH A 68 2068 2068 HOH HOH . E 5 HOH A 69 2069 2069 HOH HOH . E 5 HOH A 70 2070 2070 HOH HOH . E 5 HOH A 71 2071 2071 HOH HOH . E 5 HOH A 72 2072 2072 HOH HOH . E 5 HOH A 73 2073 2073 HOH HOH . E 5 HOH A 74 2074 2074 HOH HOH . E 5 HOH A 75 2075 2075 HOH HOH . E 5 HOH A 76 2076 2076 HOH HOH . E 5 HOH A 77 2077 2077 HOH HOH . E 5 HOH A 78 2078 2078 HOH HOH . E 5 HOH A 79 2079 2079 HOH HOH . E 5 HOH A 80 2080 2080 HOH HOH . E 5 HOH A 81 2081 2081 HOH HOH . E 5 HOH A 82 2082 2082 HOH HOH . E 5 HOH A 83 2083 2083 HOH HOH . E 5 HOH A 84 2084 2084 HOH HOH . E 5 HOH A 85 2085 2085 HOH HOH . E 5 HOH A 86 2086 2086 HOH HOH . E 5 HOH A 87 2087 2087 HOH HOH . E 5 HOH A 88 2088 2088 HOH HOH . E 5 HOH A 89 2089 2089 HOH HOH . E 5 HOH A 90 2090 2090 HOH HOH . E 5 HOH A 91 2091 2091 HOH HOH . E 5 HOH A 92 2092 2092 HOH HOH . E 5 HOH A 93 2093 2093 HOH HOH . E 5 HOH A 94 2094 2094 HOH HOH . E 5 HOH A 95 2095 2095 HOH HOH . E 5 HOH A 96 2096 2096 HOH HOH . E 5 HOH A 97 2097 2097 HOH HOH . E 5 HOH A 98 2098 2098 HOH HOH . E 5 HOH A 99 2099 2099 HOH HOH . E 5 HOH A 100 2100 2100 HOH HOH . E 5 HOH A 101 2101 2101 HOH HOH . E 5 HOH A 102 2102 2102 HOH HOH . E 5 HOH A 103 2103 2103 HOH HOH . E 5 HOH A 104 2104 2104 HOH HOH . E 5 HOH A 105 2105 2105 HOH HOH . E 5 HOH A 106 2106 2106 HOH HOH . E 5 HOH A 107 2107 2107 HOH HOH . E 5 HOH A 108 2108 2108 HOH HOH . E 5 HOH A 109 2109 2109 HOH HOH . E 5 HOH A 110 2110 2110 HOH HOH . E 5 HOH A 111 2111 2111 HOH HOH . E 5 HOH A 112 2112 2112 HOH HOH . E 5 HOH A 113 2113 2113 HOH HOH . E 5 HOH A 114 2114 2114 HOH HOH . E 5 HOH A 115 2115 2115 HOH HOH . E 5 HOH A 116 2116 2116 HOH HOH . E 5 HOH A 117 2117 2117 HOH HOH . E 5 HOH A 118 2118 2118 HOH HOH . E 5 HOH A 119 2119 2119 HOH HOH . E 5 HOH A 120 2120 2120 HOH HOH . E 5 HOH A 121 2121 2121 HOH HOH . E 5 HOH A 122 2122 2122 HOH HOH . E 5 HOH A 123 2123 2123 HOH HOH . E 5 HOH A 124 2124 2124 HOH HOH . E 5 HOH A 125 2125 2125 HOH HOH . E 5 HOH A 126 2126 2126 HOH HOH . E 5 HOH A 127 2127 2127 HOH HOH . E 5 HOH A 128 2128 2128 HOH HOH . E 5 HOH A 129 2129 2129 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A ACO . . . B 2 10.132 6.438 8.681 1 17.87 ? N1A ACO 1147 A 1 HETATM 2 C C2A ACO . . . B 2 9.121 5.662 8.228 1 17.9 ? C2A ACO 1147 A 1 HETATM 3 N N3A ACO . . . B 2 9.177 4.916 7.121 1 17.57 ? N3A ACO 1147 A 1 HETATM 4 C C4A ACO . . . B 2 10.331 4.938 6.381 1 16.34 ? C4A ACO 1147 A 1 HETATM 5 C C5A ACO . . . B 2 11.452 5.783 6.804 1 17.37 ? C5A ACO 1147 A 1 HETATM 6 C C6A ACO . . . B 2 11.304 6.557 8.034 1 16.66 ? C6A ACO 1147 A 1 HETATM 7 N N6A ACO . . . B 2 12.321 7.336 8.469 1 18.4 ? N6A ACO 1147 A 1 HETATM 8 N N7A ACO . . . B 2 12.443 5.628 5.921 1 16.7 ? N7A ACO 1147 A 1 HETATM 9 C C8A ACO . . . B 2 12.002 4.76 4.995 1 16.67 ? C8A ACO 1147 A 1 HETATM 10 N N9A ACO . . . B 2 10.737 4.363 5.268 1 16.39 ? N9A ACO 1147 A 1 HETATM 11 C C1B ACO . . . B 2 9.949 3.406 4.488 1 16.7 ? C1B ACO 1147 A 1 HETATM 12 C C2B ACO . . . B 2 9.985 3.619 2.991 1 17.68 ? C2B ACO 1147 A 1 HETATM 13 O O2B ACO . . . B 2 8.982 4.583 2.611 1 21.67 ? O2B ACO 1147 A 1 HETATM 14 C C3B ACO . . . B 2 9.717 2.203 2.523 1 18.04 ? C3B ACO 1147 A 1 HETATM 15 O O3B ACO . . . B 2 8.322 1.961 2.628 1 20.4 ? O3B ACO 1147 A 1 HETATM 16 P P3B ACO . . . B 2 7.442 1.388 1.408 1 21.21 ? P3B ACO 1147 A 1 HETATM 17 O O7A ACO . . . B 2 8.011 0.018 1.058 1 21.14 ? O7A ACO 1147 A 1 HETATM 18 O O8A ACO . . . B 2 6.053 1.324 2.006 1 23.05 ? O8A ACO 1147 A 1 HETATM 19 O O9A ACO . . . B 2 7.57 2.393 0.294 1 21.87 ? O9A ACO 1147 A 1 HETATM 20 C C4B ACO . . . B 2 10.428 1.311 3.533 1 14.68 ? C4B ACO 1147 A 1 HETATM 21 O O4B ACO . . . B 2 10.507 2.108 4.712 1 15.96 ? O4B ACO 1147 A 1 HETATM 22 C C5B ACO . . . B 2 11.833 0.877 3.125 1 14 ? C5B ACO 1147 A 1 HETATM 23 O O5B ACO . . . B 2 12.63 2.019 2.827 1 12.83 ? O5B ACO 1147 A 1 HETATM 24 P P1A ACO . . . B 2 14.008 1.869 2.028 1 11.36 ? P1A ACO 1147 A 1 HETATM 25 O O1A ACO . . . B 2 13.865 2.569 0.708 1 11.29 ? O1A ACO 1147 A 1 HETATM 26 O O2A ACO . . . B 2 14.462 0.435 2.075 1 11.12 ? O2A ACO 1147 A 1 HETATM 27 O O3A ACO . . . B 2 14.951 2.743 2.979 1 9.67 ? O3A ACO 1147 A 1 HETATM 28 P P2A ACO . . . B 2 16.003 3.903 2.638 1 10.96 ? P2A ACO 1147 A 1 HETATM 29 O O4A ACO . . . B 2 15.247 5.129 2.159 1 11.55 ? O4A ACO 1147 A 1 HETATM 30 O O5A ACO . . . B 2 17.08 3.357 1.759 1 10.86 ? O5A ACO 1147 A 1 HETATM 31 O O6A ACO . . . B 2 16.69 4.152 4.058 1 10.34 ? O6A ACO 1147 A 1 HETATM 32 C CBP ACO . . . B 2 16.77 5.167 6.272 1 10.19 ? CBP ACO 1147 A 1 HETATM 33 C CCP ACO . . . B 2 15.947 4.405 5.24 1 10.02 ? CCP ACO 1147 A 1 HETATM 34 C CDP ACO . . . B 2 18.082 4.398 6.426 1 8.64 ? CDP ACO 1147 A 1 HETATM 35 C CEP ACO . . . B 2 16.013 5.178 7.608 1 11.47 ? CEP ACO 1147 A 1 HETATM 36 C CAP ACO . . . B 2 17.02 6.58 5.703 1 10.89 ? CAP ACO 1147 A 1 HETATM 37 O OAP ACO . . . B 2 15.772 7.311 5.626 1 13.8 ? OAP ACO 1147 A 1 HETATM 38 C C9P ACO . . . B 2 18.016 7.379 6.509 1 10.55 ? C9P ACO 1147 A 1 HETATM 39 O O9P ACO . . . B 2 19.213 7.257 6.325 1 10.38 ? O9P ACO 1147 A 1 HETATM 40 N N8P ACO . . . B 2 17.552 8.269 7.388 1 11.97 ? N8P ACO 1147 A 1 HETATM 41 C C7P ACO . . . B 2 18.431 9.148 8.133 1 11.28 ? C7P ACO 1147 A 1 HETATM 42 C C6P ACO . . . B 2 19.326 8.44 9.136 1 11.84 ? C6P ACO 1147 A 1 HETATM 43 C C5P ACO . . . B 2 18.582 7.464 10.026 1 11.73 ? C5P ACO 1147 A 1 HETATM 44 O O5P ACO . . . B 2 17.67 7.857 10.747 1 14.24 ? O5P ACO 1147 A 1 HETATM 45 N N4P ACO . . . B 2 19.043 6.206 10.007 1 12.38 ? N4P ACO 1147 A 1 HETATM 46 C C3P ACO . . . B 2 18.551 5.168 10.89 1 13.55 ? C3P ACO 1147 A 1 HETATM 47 C C2P ACO . . . B 2 19.268 5.255 12.228 1 16.25 ? C2P ACO 1147 A 1 HETATM 48 S S1P ACO . . . B 2 18.721 3.927 13.313 1 16.9 ? S1P ACO 1147 A 1 HETATM 49 C C ACO . . . B 2 20.368 3.369 13.835 1 22.34 ? C ACO 1147 A 1 HETATM 50 O O ACO . . . B 2 21.275 2.945 13.045 1 23.91 ? O ACO 1147 A 1 HETATM 51 C CH3 ACO . . . B 2 20.652 3.428 15.293 1 24.41 ? CH3 ACO 1147 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 258 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 51 #