data_2JDR
#
_model_server_result.job_id            7dSq98sPkqMtEiSnwRJEgw 
_model_server_result.datetime_utc      '2024-12-04 06:11:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2jdr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1480}' 
#
_entry.id    2JDR 
#
_exptl.entry_id    2JDR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              397.472 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2S)-1-(1H-INDOL-3-YL)-3-{[5-(3-METHYL-1H-INDAZOL-5-YL)PYRIDIN-3-YL]OXY}PROPAN-2-AMINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2JDR 
_cell.length_a            44.927 
_cell.length_b            60.994 
_cell.length_c            124.963 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2JDR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PQS 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C LYS 168 A LYS 308 1_555 A N TPO 169 A TPO 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale2 A C TPO 169 A TPO 309 1_555 A N PHE 170 A PHE 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
#
_chem_comp.formula           'C24 H23 N5 O' 
_chem_comp.formula_weight    397.472 
_chem_comp.id                L20 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2S)-1-(1H-INDOL-3-YL)-3-{[5-(3-METHYL-1H-INDAZOL-5-YL)PYRIDIN-3-YL]OXY}PROPAN-2-AMINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 L20 sing 173 n n 
C1 H1C1 L20 sing 174 n n 
C1 H1C2 L20 sing 175 n n 
C1 H1C3 L20 sing 176 n n 
C2 N3 L20 doub 177 n y 
C2 C11 L20 sing 178 n y 
N3 N4 L20 sing 179 n y 
N4 C6 L20 sing 180 n y 
N4 H4 L20 sing 181 n n 
C6 C7 L20 doub 182 n y 
C6 C11 L20 sing 183 n y 
C7 C8 L20 sing 184 n y 
C7 H7 L20 sing 185 n n 
C8 C9 L20 doub 186 n y 
C8 H8 L20 sing 187 n n 
C9 C10 L20 sing 188 n y 
C9 C12 L20 sing 189 n y 
C10 C11 L20 doub 190 n y 
C10 H10 L20 sing 191 n n 
C12 C13 L20 sing 192 n y 
C12 C36 L20 doub 193 n y 
C13 N14 L20 doub 194 n y 
C13 H13 L20 sing 195 n n 
N14 C15 L20 sing 196 n y 
C15 C16 L20 doub 197 n y 
C15 H15 L20 sing 198 n n 
C16 O17 L20 sing 199 n n 
C16 C36 L20 sing 200 n y 
O17 C18 L20 sing 201 n n 
C18 C19 L20 sing 202 n n 
C18 H181 L20 sing 203 n n 
C18 H182 L20 sing 204 n n 
C19 N21 L20 sing 205 n n 
C19 C25 L20 sing 206 n n 
C19 H19 L20 sing 207 n n 
N21 H211 L20 sing 208 n n 
N21 H212 L20 sing 209 n n 
C25 C26 L20 sing 210 n n 
C25 H251 L20 sing 211 n n 
C25 H252 L20 sing 212 n n 
C26 C27 L20 doub 213 n y 
C26 C35 L20 sing 214 n y 
C27 N28 L20 sing 215 n y 
C27 H27 L20 sing 216 n n 
N28 C30 L20 sing 217 n y 
N28 H28 L20 sing 218 n n 
C30 C31 L20 doub 219 n y 
C30 C35 L20 sing 220 n y 
C31 C32 L20 sing 221 n y 
C31 H31 L20 sing 222 n n 
C32 C33 L20 doub 223 n y 
C32 H32 L20 sing 224 n n 
C33 C34 L20 sing 225 n y 
C33 H33 L20 sing 226 n n 
C34 C35 L20 doub 227 n y 
C34 H34 L20 sing 228 n n 
C36 H36 L20 sing 229 n n 
#
_atom_sites.entry_id                     2JDR 
_atom_sites.fract_transf_matrix[1][1]    0.022258 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016395 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008002 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 L20 A 1 1480 1480 L20 L20 . 
D 4 HOH A 1 2001 2001 HOH HOH . 
D 4 HOH A 2 2002 2002 HOH HOH . 
D 4 HOH A 3 2003 2003 HOH HOH . 
D 4 HOH A 4 2004 2004 HOH HOH . 
D 4 HOH A 5 2005 2005 HOH HOH . 
D 4 HOH A 6 2006 2006 HOH HOH . 
D 4 HOH A 7 2007 2007 HOH HOH . 
D 4 HOH A 8 2008 2008 HOH HOH . 
D 4 HOH A 9 2009 2009 HOH HOH . 
D 4 HOH A 10 2010 2010 HOH HOH . 
D 4 HOH A 11 2011 2011 HOH HOH . 
D 4 HOH A 12 2012 2012 HOH HOH . 
D 4 HOH A 13 2013 2013 HOH HOH . 
D 4 HOH A 14 2014 2014 HOH HOH . 
D 4 HOH A 15 2015 2015 HOH HOH . 
D 4 HOH A 16 2016 2016 HOH HOH . 
D 4 HOH A 17 2017 2017 HOH HOH . 
D 4 HOH A 18 2018 2018 HOH HOH . 
D 4 HOH A 19 2019 2019 HOH HOH . 
D 4 HOH A 20 2020 2020 HOH HOH . 
D 4 HOH A 21 2021 2021 HOH HOH . 
D 4 HOH A 22 2022 2022 HOH HOH . 
D 4 HOH A 23 2023 2023 HOH HOH . 
D 4 HOH A 24 2024 2024 HOH HOH . 
D 4 HOH A 25 2025 2025 HOH HOH . 
D 4 HOH A 26 2026 2026 HOH HOH . 
D 4 HOH A 27 2027 2027 HOH HOH . 
D 4 HOH A 28 2028 2028 HOH HOH . 
D 4 HOH A 29 2029 2029 HOH HOH . 
D 4 HOH A 30 2030 2030 HOH HOH . 
D 4 HOH A 31 2031 2031 HOH HOH . 
D 4 HOH A 32 2032 2032 HOH HOH . 
D 4 HOH A 33 2033 2033 HOH HOH . 
D 4 HOH A 34 2034 2034 HOH HOH . 
D 4 HOH A 35 2035 2035 HOH HOH . 
D 4 HOH A 36 2036 2036 HOH HOH . 
D 4 HOH A 37 2037 2037 HOH HOH . 
D 4 HOH A 38 2038 2038 HOH HOH . 
D 4 HOH A 39 2039 2039 HOH HOH . 
D 4 HOH A 40 2040 2040 HOH HOH . 
D 4 HOH A 41 2041 2041 HOH HOH . 
D 4 HOH A 42 2042 2042 HOH HOH . 
D 4 HOH A 43 2043 2043 HOH HOH . 
D 4 HOH A 44 2044 2044 HOH HOH . 
D 4 HOH A 45 2045 2045 HOH HOH . 
D 4 HOH A 46 2046 2046 HOH HOH . 
D 4 HOH A 47 2047 2047 HOH HOH . 
D 4 HOH A 48 2048 2048 HOH HOH . 
D 4 HOH A 49 2049 2049 HOH HOH . 
D 4 HOH A 50 2050 2050 HOH HOH . 
D 4 HOH A 51 2051 2051 HOH HOH . 
D 4 HOH A 52 2052 2052 HOH HOH . 
D 4 HOH A 53 2053 2053 HOH HOH . 
D 4 HOH A 54 2054 2054 HOH HOH . 
D 4 HOH A 55 2055 2055 HOH HOH . 
D 4 HOH A 56 2056 2056 HOH HOH . 
D 4 HOH A 57 2057 2057 HOH HOH . 
D 4 HOH A 58 2058 2058 HOH HOH . 
D 4 HOH A 59 2059 2059 HOH HOH . 
D 4 HOH A 60 2060 2060 HOH HOH . 
D 4 HOH A 61 2061 2061 HOH HOH . 
D 4 HOH A 62 2062 2062 HOH HOH . 
D 4 HOH A 63 2063 2063 HOH HOH . 
D 4 HOH A 64 2064 2064 HOH HOH . 
D 4 HOH A 65 2065 2065 HOH HOH . 
D 4 HOH A 66 2066 2066 HOH HOH . 
D 4 HOH A 67 2067 2067 HOH HOH . 
D 4 HOH A 68 2068 2068 HOH HOH . 
D 4 HOH A 69 2069 2069 HOH HOH . 
D 4 HOH A 70 2070 2070 HOH HOH . 
D 4 HOH A 71 2071 2071 HOH HOH . 
D 4 HOH A 72 2072 2072 HOH HOH . 
D 4 HOH A 73 2073 2073 HOH HOH . 
D 4 HOH A 74 2074 2074 HOH HOH . 
D 4 HOH A 75 2075 2075 HOH HOH . 
D 4 HOH A 76 2076 2076 HOH HOH . 
D 4 HOH A 77 2077 2077 HOH HOH . 
D 4 HOH A 78 2078 2078 HOH HOH . 
D 4 HOH A 79 2079 2079 HOH HOH . 
D 4 HOH A 80 2080 2080 HOH HOH . 
D 4 HOH A 81 2081 2081 HOH HOH . 
D 4 HOH A 82 2082 2082 HOH HOH . 
D 4 HOH A 83 2083 2083 HOH HOH . 
D 4 HOH A 84 2084 2084 HOH HOH . 
D 4 HOH A 85 2085 2085 HOH HOH . 
D 4 HOH A 86 2086 2086 HOH HOH . 
D 4 HOH A 87 2087 2087 HOH HOH . 
D 4 HOH A 88 2088 2088 HOH HOH . 
D 4 HOH A 89 2089 2089 HOH HOH . 
D 4 HOH A 90 2090 2090 HOH HOH . 
D 4 HOH A 91 2091 2091 HOH HOH . 
D 4 HOH A 92 2092 2092 HOH HOH . 
D 4 HOH A 93 2093 2093 HOH HOH . 
D 4 HOH A 94 2094 2094 HOH HOH . 
D 4 HOH A 95 2095 2095 HOH HOH . 
D 4 HOH A 96 2096 2096 HOH HOH . 
D 4 HOH A 97 2097 2097 HOH HOH . 
D 4 HOH A 98 2098 2098 HOH HOH . 
D 4 HOH A 99 2099 2099 HOH HOH . 
D 4 HOH A 100 2100 2100 HOH HOH . 
D 4 HOH A 101 2101 2101 HOH HOH . 
D 4 HOH A 102 2102 2102 HOH HOH . 
E 4 HOH C 1 2001 2001 HOH HOH . 
E 4 HOH C 2 2002 2002 HOH HOH . 
E 4 HOH C 3 2003 2003 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 L20 . . . C 3 24.754 5.148 42.808 1 27.18 ? C1 L20 1480 A 1 
HETATM 2 C C2 L20 . . . C 3 23.588 6.049 42.64 1 24.3 ? C2 L20 1480 A 1 
HETATM 3 N N3 L20 . . . C 3 23.555 7.354 42.779 1 33.84 ? N3 L20 1480 A 1 
HETATM 4 N N4 L20 . . . C 3 22.26 7.852 42.54 1 32.89 ? N4 L20 1480 A 1 
HETATM 5 C C6 L20 . . . C 3 21.45 6.779 42.215 1 29.85 ? C6 L20 1480 A 1 
HETATM 6 C C7 L20 . . . C 3 20.105 6.663 41.914 1 27.94 ? C7 L20 1480 A 1 
HETATM 7 C C8 L20 . . . C 3 19.586 5.432 41.635 1 30.68 ? C8 L20 1480 A 1 
HETATM 8 C C9 L20 . . . C 3 20.371 4.261 41.681 1 35.47 ? C9 L20 1480 A 1 
HETATM 9 C C10 L20 . . . C 3 21.716 4.358 42.019 1 31.3 ? C10 L20 1480 A 1 
HETATM 10 C C11 L20 . . . C 3 22.249 5.618 42.268 1 28.4 ? C11 L20 1480 A 1 
HETATM 11 C C12 L20 . . . C 3 19.738 2.922 41.429 1 37.13 ? C12 L20 1480 A 1 
HETATM 12 C C13 L20 . . . C 3 18.775 2.708 40.454 1 41.36 ? C13 L20 1480 A 1 
HETATM 13 N N14 L20 . . . C 3 18.243 1.512 40.299 1 43.22 ? N14 L20 1480 A 1 
HETATM 14 C C15 L20 . . . C 3 18.572 0.495 41.049 1 41.46 ? C15 L20 1480 A 1 
HETATM 15 C C16 L20 . . . C 3 19.503 0.617 42.068 1 37.82 ? C16 L20 1480 A 1 
HETATM 16 O O17 L20 . . . C 3 19.738 -0.51 42.779 1 37.2 ? O17 L20 1480 A 1 
HETATM 17 C C18 L20 . . . C 3 20.36 -0.617 44.03 1 32.58 ? C18 L20 1480 A 1 
HETATM 18 C C19 L20 . . . C 3 20.614 -2.12 44.098 1 36.29 ? C19 L20 1480 A 1 
HETATM 19 N N21 L20 . . . C 3 19.408 -2.891 43.814 1 36.87 ? N21 L20 1480 A 1 
HETATM 20 C C25 L20 . . . C 3 21.573 -2.555 43.001 1 37.95 ? C25 L20 1480 A 1 
HETATM 21 C C26 L20 . . . C 3 22.941 -1.976 43.252 1 42.1 ? C26 L20 1480 A 1 
HETATM 22 C C27 L20 . . . C 3 23.849 -2.505 44.109 1 40.97 ? C27 L20 1480 A 1 
HETATM 23 N N28 L20 . . . C 3 24.986 -1.72 44.082 1 40.32 ? N28 L20 1480 A 1 
HETATM 24 C C30 L20 . . . C 3 24.819 -0.661 43.194 1 40.19 ? C30 L20 1480 A 1 
HETATM 25 C C31 L20 . . . C 3 25.639 0.415 42.796 1 41.36 ? C31 L20 1480 A 1 
HETATM 26 C C32 L20 . . . C 3 25.224 1.355 41.863 1 42.97 ? C32 L20 1480 A 1 
HETATM 27 C C33 L20 . . . C 3 23.953 1.24 41.308 1 39.65 ? C33 L20 1480 A 1 
HETATM 28 C C34 L20 . . . C 3 23.121 0.196 41.693 1 45.2 ? C34 L20 1480 A 1 
HETATM 29 C C35 L20 . . . C 3 23.532 -0.774 42.643 1 38.92 ? C35 L20 1480 A 1 
HETATM 30 C C36 L20 . . . C 3 20.098 1.832 42.261 1 36.95 ? C36 L20 1480 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           30 
#