data_2JEB # _model_server_result.job_id yAIu1dkTha1warepQMMQYw _model_server_result.datetime_utc '2025-03-04 07:40:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2jeb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":401}' # _entry.id 2JEB # _exptl.entry_id 2JEB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.278 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PENTAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2JEB _cell.length_a 133.64 _cell.length_b 133.64 _cell.length_c 133.64 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2JEB _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 3' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details nonameric _pdbx_struct_assembly.oligomeric_count 9 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 -z,x+1/2,-y+1/2 0 0 -1 1 0 0 0 -1 0 0 66.82 66.82 3 'crystal symmetry operation' 11_455 y-1/2,-z+1/2,-x 0 1 0 0 0 -1 -1 0 0 -66.82 66.82 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 74 A ASP 72 1_555 D MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc2 I O HOH . B HOH 2037 8_555 G MN MN . I MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? # _chem_comp.formula 'C10 H22 O6' _chem_comp.formula_weight 238.278 _chem_comp.id 1PE _chem_comp.mon_nstd_flag . _chem_comp.name 'PENTAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PEG400 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OH2 C12 1PE sing 1 n n OH2 HO2 1PE sing 2 n n C12 C22 1PE sing 3 n n C12 H121 1PE sing 4 n n C12 H122 1PE sing 5 n n C22 OH3 1PE sing 6 n n C22 H221 1PE sing 7 n n C22 H222 1PE sing 8 n n OH3 C23 1PE sing 9 n n C13 C23 1PE sing 10 n n C13 OH4 1PE sing 11 n n C13 H131 1PE sing 12 n n C13 H132 1PE sing 13 n n C23 H231 1PE sing 14 n n C23 H232 1PE sing 15 n n OH4 C24 1PE sing 16 n n C14 C24 1PE sing 17 n n C14 OH5 1PE sing 18 n n C14 H141 1PE sing 19 n n C14 H142 1PE sing 20 n n C24 H241 1PE sing 21 n n C24 H242 1PE sing 22 n n OH5 C25 1PE sing 23 n n C15 C25 1PE sing 24 n n C15 OH6 1PE sing 25 n n C15 H151 1PE sing 26 n n C15 H152 1PE sing 27 n n C25 H251 1PE sing 28 n n C25 H252 1PE sing 29 n n OH6 C26 1PE sing 30 n n C16 C26 1PE sing 31 n n C16 OH7 1PE sing 32 n n C16 H161 1PE sing 33 n n C16 H162 1PE sing 34 n n C26 H261 1PE sing 35 n n C26 H262 1PE sing 36 n n OH7 HO7 1PE sing 37 n n # _atom_sites.entry_id 2JEB _atom_sites.fract_transf_matrix[1][1] 0.007483 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007483 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007483 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MN A 1 301 301 MN MN . E 5 1PE A 1 401 401 1PE 1PE . F 6 CL B 1 301 301 CL CL . G 4 MN I 1 301 301 MN MN . H 7 HOH A 1 2001 2001 HOH HOH . H 7 HOH A 2 2002 2002 HOH HOH . H 7 HOH A 3 2003 2003 HOH HOH . H 7 HOH A 4 2004 2004 HOH HOH . H 7 HOH A 5 2005 2005 HOH HOH . H 7 HOH A 6 2006 2006 HOH HOH . H 7 HOH A 7 2007 2007 HOH HOH . H 7 HOH A 8 2008 2008 HOH HOH . H 7 HOH A 9 2009 2009 HOH HOH . H 7 HOH A 10 2010 2010 HOH HOH . H 7 HOH A 11 2011 2011 HOH HOH . H 7 HOH A 12 2012 2012 HOH HOH . H 7 HOH A 13 2013 2013 HOH HOH . H 7 HOH A 14 2014 2014 HOH HOH . H 7 HOH A 15 2015 2015 HOH HOH . H 7 HOH A 16 2016 2016 HOH HOH . H 7 HOH A 17 2017 2017 HOH HOH . H 7 HOH A 18 2018 2018 HOH HOH . H 7 HOH A 19 2019 2019 HOH HOH . H 7 HOH A 20 2020 2020 HOH HOH . H 7 HOH A 21 2021 2021 HOH HOH . H 7 HOH A 22 2022 2022 HOH HOH . H 7 HOH A 23 2023 2023 HOH HOH . H 7 HOH A 24 2024 2024 HOH HOH . H 7 HOH A 25 2025 2025 HOH HOH . H 7 HOH A 26 2026 2026 HOH HOH . H 7 HOH A 27 2027 2027 HOH HOH . H 7 HOH A 28 2028 2028 HOH HOH . H 7 HOH A 29 2029 2029 HOH HOH . H 7 HOH A 30 2030 2030 HOH HOH . H 7 HOH A 31 2031 2031 HOH HOH . H 7 HOH A 32 2032 2032 HOH HOH . H 7 HOH A 33 2033 2033 HOH HOH . H 7 HOH A 34 2034 2034 HOH HOH . H 7 HOH A 35 2035 2035 HOH HOH . H 7 HOH A 36 2036 2036 HOH HOH . H 7 HOH A 37 2037 2037 HOH HOH . H 7 HOH A 38 2038 2038 HOH HOH . H 7 HOH A 39 2039 2039 HOH HOH . H 7 HOH A 40 2040 2040 HOH HOH . H 7 HOH A 41 2041 2041 HOH HOH . H 7 HOH A 42 2042 2042 HOH HOH . H 7 HOH A 43 2043 2043 HOH HOH . H 7 HOH A 44 2044 2044 HOH HOH . H 7 HOH A 45 2045 2045 HOH HOH . H 7 HOH A 46 2046 2046 HOH HOH . H 7 HOH A 47 2047 2047 HOH HOH . H 7 HOH A 48 2048 2048 HOH HOH . H 7 HOH A 49 2049 2049 HOH HOH . H 7 HOH A 50 2050 2050 HOH HOH . H 7 HOH A 51 2051 2051 HOH HOH . H 7 HOH A 52 2052 2052 HOH HOH . H 7 HOH A 53 2053 2053 HOH HOH . H 7 HOH A 54 2054 2054 HOH HOH . H 7 HOH A 55 2055 2055 HOH HOH . H 7 HOH A 56 2056 2056 HOH HOH . H 7 HOH A 57 2057 2057 HOH HOH . H 7 HOH A 58 2058 2058 HOH HOH . H 7 HOH A 59 2059 2059 HOH HOH . H 7 HOH A 60 2060 2060 HOH HOH . H 7 HOH A 61 2061 2061 HOH HOH . H 7 HOH A 62 2062 2062 HOH HOH . H 7 HOH A 63 2063 2063 HOH HOH . H 7 HOH A 64 2064 2064 HOH HOH . H 7 HOH A 65 2065 2065 HOH HOH . H 7 HOH A 66 2066 2066 HOH HOH . H 7 HOH A 67 2067 2067 HOH HOH . H 7 HOH A 68 2068 2068 HOH HOH . H 7 HOH A 69 2069 2069 HOH HOH . H 7 HOH A 70 2070 2070 HOH HOH . H 7 HOH A 71 2071 2071 HOH HOH . H 7 HOH A 72 2072 2072 HOH HOH . H 7 HOH A 73 2073 2073 HOH HOH . H 7 HOH A 74 2074 2074 HOH HOH . H 7 HOH A 75 2075 2075 HOH HOH . H 7 HOH A 76 2076 2076 HOH HOH . H 7 HOH A 77 2077 2077 HOH HOH . H 7 HOH A 78 2078 2078 HOH HOH . H 7 HOH A 79 2079 2079 HOH HOH . H 7 HOH A 80 2080 2080 HOH HOH . H 7 HOH A 81 2081 2081 HOH HOH . H 7 HOH A 82 2082 2082 HOH HOH . H 7 HOH A 83 2083 2083 HOH HOH . H 7 HOH A 84 2084 2084 HOH HOH . H 7 HOH A 85 2085 2085 HOH HOH . H 7 HOH A 86 2086 2086 HOH HOH . H 7 HOH A 87 2087 2087 HOH HOH . H 7 HOH A 88 2088 2088 HOH HOH . H 7 HOH A 89 2089 2089 HOH HOH . H 7 HOH A 90 2090 2090 HOH HOH . H 7 HOH A 91 2091 2091 HOH HOH . H 7 HOH A 92 2092 2092 HOH HOH . H 7 HOH A 93 2093 2093 HOH HOH . H 7 HOH A 94 2094 2094 HOH HOH . H 7 HOH A 95 2095 2095 HOH HOH . H 7 HOH A 96 2096 2096 HOH HOH . H 7 HOH A 97 2097 2097 HOH HOH . I 7 HOH B 1 2001 2001 HOH HOH . I 7 HOH B 2 2002 2002 HOH HOH . I 7 HOH B 3 2003 2003 HOH HOH . I 7 HOH B 4 2004 2004 HOH HOH . I 7 HOH B 5 2005 2005 HOH HOH . I 7 HOH B 6 2006 2006 HOH HOH . I 7 HOH B 7 2007 2007 HOH HOH . I 7 HOH B 8 2008 2008 HOH HOH . I 7 HOH B 9 2009 2009 HOH HOH . I 7 HOH B 10 2010 2010 HOH HOH . I 7 HOH B 11 2011 2011 HOH HOH . I 7 HOH B 12 2012 2012 HOH HOH . I 7 HOH B 13 2013 2013 HOH HOH . I 7 HOH B 14 2014 2014 HOH HOH . I 7 HOH B 15 2015 2015 HOH HOH . I 7 HOH B 16 2016 2016 HOH HOH . I 7 HOH B 17 2017 2017 HOH HOH . I 7 HOH B 18 2018 2018 HOH HOH . I 7 HOH B 19 2019 2019 HOH HOH . I 7 HOH B 20 2020 2020 HOH HOH . I 7 HOH B 21 2021 2021 HOH HOH . I 7 HOH B 22 2022 2022 HOH HOH . I 7 HOH B 23 2023 2023 HOH HOH . I 7 HOH B 24 2024 2024 HOH HOH . I 7 HOH B 25 2025 2025 HOH HOH . I 7 HOH B 26 2026 2026 HOH HOH . I 7 HOH B 27 2027 2027 HOH HOH . I 7 HOH B 28 2028 2028 HOH HOH . I 7 HOH B 29 2029 2029 HOH HOH . I 7 HOH B 30 2030 2030 HOH HOH . I 7 HOH B 31 2031 2031 HOH HOH . I 7 HOH B 32 2032 2032 HOH HOH . I 7 HOH B 33 2033 2033 HOH HOH . I 7 HOH B 34 2034 2034 HOH HOH . I 7 HOH B 35 2035 2035 HOH HOH . I 7 HOH B 36 2036 2036 HOH HOH . I 7 HOH B 37 2037 2037 HOH HOH . I 7 HOH B 38 2038 2038 HOH HOH . I 7 HOH B 39 2039 2039 HOH HOH . I 7 HOH B 40 2040 2040 HOH HOH . I 7 HOH B 41 2041 2041 HOH HOH . I 7 HOH B 42 2042 2042 HOH HOH . I 7 HOH B 43 2043 2043 HOH HOH . I 7 HOH B 44 2044 2044 HOH HOH . I 7 HOH B 45 2045 2045 HOH HOH . I 7 HOH B 46 2046 2046 HOH HOH . I 7 HOH B 47 2047 2047 HOH HOH . I 7 HOH B 48 2048 2048 HOH HOH . I 7 HOH B 49 2049 2049 HOH HOH . I 7 HOH B 50 2050 2050 HOH HOH . I 7 HOH B 51 2051 2051 HOH HOH . I 7 HOH B 52 2052 2052 HOH HOH . I 7 HOH B 53 2053 2053 HOH HOH . I 7 HOH B 54 2054 2054 HOH HOH . I 7 HOH B 55 2055 2055 HOH HOH . J 7 HOH I 1 2001 2001 HOH HOH . J 7 HOH I 2 2002 2002 HOH HOH . J 7 HOH I 3 2003 2003 HOH HOH . J 7 HOH I 4 2004 2004 HOH HOH . J 7 HOH I 5 2005 2005 HOH HOH . J 7 HOH I 6 2006 2006 HOH HOH . J 7 HOH I 7 2007 2007 HOH HOH . J 7 HOH I 8 2008 2008 HOH HOH . J 7 HOH I 9 2009 2009 HOH HOH . J 7 HOH I 10 2010 2010 HOH HOH . J 7 HOH I 11 2011 2011 HOH HOH . J 7 HOH I 12 2012 2012 HOH HOH . J 7 HOH I 13 2013 2013 HOH HOH . J 7 HOH I 14 2014 2014 HOH HOH . J 7 HOH I 15 2015 2015 HOH HOH . J 7 HOH I 16 2016 2016 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OH2 1PE . . . E 5 22.287 56.152 26.965 1 58.57 ? OH2 1PE 401 A 1 HETATM 2 C C12 1PE . . . E 5 23.304 55.39 26.288 1 60.14 ? C12 1PE 401 A 1 HETATM 3 C C22 1PE . . . E 5 24.295 54.805 27.297 1 59.82 ? C22 1PE 401 A 1 HETATM 4 O OH3 1PE . . . E 5 23.674 53.761 28.061 1 59.96 ? OH3 1PE 401 A 1 HETATM 5 C C13 1PE . . . E 5 23.531 52.46 30.079 1 57.29 ? C13 1PE 401 A 1 HETATM 6 C C23 1PE . . . E 5 24.339 53.486 29.298 1 58 ? C23 1PE 401 A 1 HETATM 7 O OH4 1PE . . . E 5 22.42 53.083 30.729 1 55.27 ? OH4 1PE 401 A 1 HETATM 8 C C14 1PE . . . E 5 20.555 52.207 31.979 1 51.4 ? C14 1PE 401 A 1 HETATM 9 C C24 1PE . . . E 5 22.065 52.385 31.926 1 52.72 ? C24 1PE 401 A 1 HETATM 10 O OH5 1PE . . . E 5 19.895 53.429 31.652 1 50.54 ? OH5 1PE 401 A 1 HETATM 11 C C15 1PE . . . E 5 18.007 54.932 31.899 1 49.02 ? C15 1PE 401 A 1 HETATM 12 C C25 1PE . . . E 5 18.537 53.515 32.109 1 49.43 ? C25 1PE 401 A 1 HETATM 13 O OH6 1PE . . . E 5 18.124 55.29 30.522 1 49.07 ? OH6 1PE 401 A 1 HETATM 14 C C16 1PE . . . E 5 18.415 57.581 29.8 1 49.58 ? C16 1PE 401 A 1 HETATM 15 C C26 1PE . . . E 5 17.425 56.482 30.149 1 49.08 ? C26 1PE 401 A 1 HETATM 16 O OH7 1PE . . . E 5 19.213 57.188 28.68 1 49.84 ? OH7 1PE 401 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 679 _model_server_stats.encode_time_ms 21 _model_server_stats.element_count 16 #