data_2JF5 # _model_server_result.job_id TWjzUmTm-2a435a7ce5d4A _model_server_result.datetime_utc '2024-10-25 20:19:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2jf5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1081}' # _entry.id 2JF5 # _exptl.entry_id 2JF5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.933 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COBALT (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2JF5 _cell.length_a 105.021 _cell.length_b 105.021 _cell.length_c 105.021 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2JF5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 212 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 3 2' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A N MET 1 A MET 1 1_555 D MG MG . A MG 1078 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.706 ? metalc ? metalc2 A OE2 GLU 16 A GLU 16 1_555 D MG MG . A MG 1078 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc3 A OE2 GLU 18 A GLU 18 1_555 C CD CD . A CD 1076 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.101 ? metalc ? metalc4 A OE2 GLU 18 A GLU 18 12_664 C CD CD . A CD 1076 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.597 ? metalc ? metalc5 A OE1 GLU 18 A GLU 18 12_664 C CD CD . A CD 1076 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.4 ? metalc ? metalc6 A OD1 ASP 21 A ASP 21 1_555 C CD CD . A CD 1076 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.165 ? metalc ? metalc7 A OD1 ASP 21 A ASP 21 1_555 C CD CD . A CD 1076 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.174 ? metalc ? metalc8 A OD2 ASP 21 A ASP 21 1_555 C CD CD . A CD 1076 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.64 ? metalc ? metalc9 D MG MG . A MG 1078 1_555 I O HOH . A HOH 2005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.881 ? metalc ? metalc10 B N MET 1 B MET 1 1_555 F CO CO . B CO 1079 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.864 ? metalc ? metalc11 B OE2 GLU 16 B GLU 16 1_555 F CO CO . B CO 1079 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc12 B OE1 GLU 18 B GLU 18 1_555 E CD CD . B CD 1077 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.344 ? metalc ? metalc13 B OE1 GLU 18 B GLU 18 10_756 E CD CD . B CD 1077 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.502 ? metalc ? metalc14 B OE2 GLU 18 B GLU 18 10_756 E CD CD . B CD 1077 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.234 ? metalc ? metalc15 B OE1 GLU 18 B GLU 18 10_756 E CD CD . B CD 1077 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.847 ? metalc ? metalc16 B OD1 ASP 21 B ASP 21 1_555 E CD CD . B CD 1077 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.337 ? metalc ? metalc17 B OD2 ASP 21 B ASP 21 1_555 E CD CD . B CD 1077 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.574 ? metalc ? metalc18 B OD1 ASP 21 B ASP 21 1_555 E CD CD . B CD 1077 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.391 ? metalc ? metalc19 B NZ LYS 29 B LYS 29 1_555 E CD CD . B CD 1077 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.877 ? metalc ? metalc20 B OD2 ASP 32 B ASP 32 7_674 F CO CO . B CO 1079 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? metalc ? metalc21 B OE1 GLU 64 B GLU 64 1_555 H CO CO . B CO 1081 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc22 B NE2 HIS 68 B HIS 68 24_676 H CO CO . B CO 1081 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc23 E CD CD . B CD 1077 1_555 G CL CL . B CL 1080 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.709 ? metalc ? metalc24 F CO CO . B CO 1079 1_555 J O HOH . B HOH 2047 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc25 H CO CO . B CO 1081 1_555 J O HOH . B HOH 2039 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? # _chem_comp.formula 'Co 2' _chem_comp.formula_weight 58.933 _chem_comp.id CO _chem_comp.mon_nstd_flag . _chem_comp.name 'COBALT (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2JF5 _atom_sites.fract_transf_matrix[1][1] 0.009522 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009522 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009522 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CD A 1 1076 1076 CD CD . D 3 MG A 1 1078 1078 MG MG . E 2 CD B 1 1077 1077 CD CD . F 4 CO B 1 1079 1079 CO CO . G 5 CL B 1 1080 1080 CL CL . H 4 CO B 1 1081 1081 CO CO . I 6 HOH A 1 2001 2001 HOH HOH . I 6 HOH A 2 2002 2002 HOH HOH . I 6 HOH A 3 2003 2003 HOH HOH . I 6 HOH A 4 2004 2004 HOH HOH . I 6 HOH A 5 2005 2005 HOH HOH . I 6 HOH A 6 2006 2006 HOH HOH . I 6 HOH A 7 2007 2007 HOH HOH . I 6 HOH A 8 2008 2008 HOH HOH . I 6 HOH A 9 2009 2009 HOH HOH . I 6 HOH A 10 2010 2010 HOH HOH . I 6 HOH A 11 2011 2011 HOH HOH . I 6 HOH A 12 2012 2012 HOH HOH . I 6 HOH A 13 2013 2013 HOH HOH . I 6 HOH A 14 2014 2014 HOH HOH . I 6 HOH A 15 2015 2015 HOH HOH . I 6 HOH A 16 2016 2016 HOH HOH . I 6 HOH A 17 2017 2017 HOH HOH . I 6 HOH A 18 2018 2018 HOH HOH . I 6 HOH A 19 2019 2019 HOH HOH . I 6 HOH A 20 2020 2020 HOH HOH . I 6 HOH A 21 2021 2021 HOH HOH . I 6 HOH A 22 2022 2022 HOH HOH . I 6 HOH A 23 2023 2023 HOH HOH . I 6 HOH A 24 2024 2024 HOH HOH . I 6 HOH A 25 2025 2025 HOH HOH . I 6 HOH A 26 2026 2026 HOH HOH . I 6 HOH A 27 2027 2027 HOH HOH . I 6 HOH A 28 2028 2028 HOH HOH . I 6 HOH A 29 2029 2029 HOH HOH . I 6 HOH A 30 2030 2030 HOH HOH . I 6 HOH A 31 2031 2031 HOH HOH . J 6 HOH B 1 2001 2001 HOH HOH . J 6 HOH B 2 2002 2002 HOH HOH . J 6 HOH B 3 2003 2003 HOH HOH . J 6 HOH B 4 2004 2004 HOH HOH . J 6 HOH B 5 2005 2005 HOH HOH . J 6 HOH B 6 2006 2006 HOH HOH . J 6 HOH B 7 2007 2007 HOH HOH . J 6 HOH B 8 2008 2008 HOH HOH . J 6 HOH B 9 2009 2009 HOH HOH . J 6 HOH B 10 2010 2010 HOH HOH . J 6 HOH B 11 2011 2011 HOH HOH . J 6 HOH B 12 2012 2012 HOH HOH . J 6 HOH B 13 2013 2013 HOH HOH . J 6 HOH B 14 2014 2014 HOH HOH . J 6 HOH B 15 2015 2015 HOH HOH . J 6 HOH B 16 2016 2016 HOH HOH . J 6 HOH B 17 2017 2017 HOH HOH . J 6 HOH B 18 2018 2018 HOH HOH . J 6 HOH B 19 2019 2019 HOH HOH . J 6 HOH B 20 2020 2020 HOH HOH . J 6 HOH B 21 2021 2021 HOH HOH . J 6 HOH B 22 2022 2022 HOH HOH . J 6 HOH B 23 2023 2023 HOH HOH . J 6 HOH B 24 2024 2024 HOH HOH . J 6 HOH B 25 2025 2025 HOH HOH . J 6 HOH B 26 2026 2026 HOH HOH . J 6 HOH B 27 2027 2027 HOH HOH . J 6 HOH B 28 2028 2028 HOH HOH . J 6 HOH B 29 2029 2029 HOH HOH . J 6 HOH B 30 2030 2030 HOH HOH . J 6 HOH B 31 2031 2031 HOH HOH . J 6 HOH B 32 2032 2032 HOH HOH . J 6 HOH B 33 2033 2033 HOH HOH . J 6 HOH B 34 2034 2034 HOH HOH . J 6 HOH B 35 2035 2035 HOH HOH . J 6 HOH B 36 2036 2036 HOH HOH . J 6 HOH B 37 2037 2037 HOH HOH . J 6 HOH B 38 2038 2038 HOH HOH . J 6 HOH B 39 2039 2039 HOH HOH . J 6 HOH B 40 2040 2040 HOH HOH . J 6 HOH B 41 2041 2041 HOH HOH . J 6 HOH B 42 2042 2042 HOH HOH . J 6 HOH B 43 2043 2043 HOH HOH . J 6 HOH B 44 2044 2044 HOH HOH . J 6 HOH B 45 2045 2045 HOH HOH . J 6 HOH B 46 2046 2046 HOH HOH . J 6 HOH B 47 2047 2047 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CO _atom_site.label_atom_id CO _atom_site.label_comp_id CO _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 4 _atom_site.Cartn_x 96.824 _atom_site.Cartn_y 124.453 _atom_site.Cartn_z 41.392 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 30.71 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CO _atom_site.auth_comp_id CO _atom_site.auth_seq_id 1081 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 339 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #