data_2JF6 # _model_server_result.job_id STyL0ypz9ORLuGeFHTrjEQ _model_server_result.datetime_utc '2025-03-05 02:11:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2jf6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1509}' # _entry.id 2JF6 # _exptl.entry_id 2JF6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 532.583 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'METHYL (2S,3R,4S)-3-ETHYL-2-(BETA-D-GLUCOPYRANOSYLOXY)-4-[(1S)-2,3,4,9-TETRAHYDRO-1H-BETA-CARBOLIN-1-YLMETHYL]-3,4-DIHYDRO-2H-PYRAN-5-CARBOXYLATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2JF6 _cell.length_a 159 _cell.length_b 159 _cell.length_c 102.9 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2JF6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 90 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 4 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 -y+1/2,x+1/2,z 0 -1 0 1 0 0 0 0 1 79.5 79.5 0 3 'crystal symmetry operation' 4_455 y-1/2,-x+1/2,z 0 1 0 -1 0 0 0 0 1 -79.5 79.5 0 4 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 159 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C27 H36 N2 O9' _chem_comp.formula_weight 532.583 _chem_comp.id S55 _chem_comp.mon_nstd_flag . _chem_comp.name 'METHYL (2S,3R,4S)-3-ETHYL-2-(BETA-D-GLUCOPYRANOSYLOXY)-4-[(1S)-2,3,4,9-TETRAHYDRO-1H-BETA-CARBOLIN-1-YLMETHYL]-3,4-DIHYDRO-2H-PYRAN-5-CARBOXYLATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O24 C21 S55 doub 277 n n C21 O22 S55 sing 278 n n C21 C20 S55 sing 279 n n O22 C23 S55 sing 280 n n C23 H231 S55 sing 281 n n C23 H232 S55 sing 282 n n C23 H233 S55 sing 283 n n C20 C15 S55 sing 284 n n C20 C19 S55 doub 285 n n C19 H19 S55 sing 286 n n C19 O18 S55 sing 287 n n O18 C17 S55 sing 288 n n C17 H17 S55 sing 289 n n C17 O27 S55 sing 290 n n C17 C16 S55 sing 291 n n O27 C28 S55 sing 292 n n C28 H28 S55 sing 293 n n C28 O33 S55 sing 294 n n C28 C29 S55 sing 295 n n O33 C32 S55 sing 296 n n C32 H32 S55 sing 297 n n C32 C33 S55 sing 298 n n C32 C31 S55 sing 299 n n C33 H331 S55 sing 300 n n C33 H332 S55 sing 301 n n C33 O34 S55 sing 302 n n O34 H34 S55 sing 303 n n C31 H31 S55 sing 304 n n C31 O35 S55 sing 305 n n C31 C30 S55 sing 306 n n O35 H35 S55 sing 307 n n C30 H30 S55 sing 308 n n C30 O36 S55 sing 309 n n C30 C29 S55 sing 310 n n O36 H36 S55 sing 311 n n C29 H29 S55 sing 312 n n C29 O37 S55 sing 313 n n O37 H37 S55 sing 314 n n C16 C15 S55 sing 315 n n C16 H16 S55 sing 316 n n C16 C25 S55 sing 317 n n C25 H251 S55 sing 318 n n C25 H252 S55 sing 319 n n C25 C26 S55 sing 320 n n C26 H261 S55 sing 321 n n C26 H262 S55 sing 322 n n C26 H263 S55 sing 323 n n C15 C14 S55 sing 324 n n C15 H15 S55 sing 325 n n C14 C13 S55 sing 326 n n C14 H141 S55 sing 327 n n C14 H142 S55 sing 328 n n C13 N12 S55 sing 329 n n C13 C8 S55 sing 330 n n C13 H13 S55 sing 331 n n N12 C11 S55 sing 332 n n N12 H12 S55 sing 333 n n C11 C10 S55 sing 334 n n C11 H111 S55 sing 335 n n C11 H112 S55 sing 336 n n C10 C7 S55 sing 337 n n C10 H101 S55 sing 338 n n C10 H102 S55 sing 339 n n C7 C8 S55 doub 340 n y C7 C5 S55 sing 341 n y C8 N9 S55 sing 342 n y C5 C4 S55 sing 343 n y C5 C6 S55 doub 344 n y C4 N9 S55 sing 345 n y C4 C3 S55 doub 346 n y N9 H9 S55 sing 347 n n C6 C1 S55 sing 348 n y C6 H6 S55 sing 349 n n C1 C2 S55 doub 350 n y C1 H1 S55 sing 351 n n C2 C3 S55 sing 352 n y C2 H2 S55 sing 353 n n C3 H3 S55 sing 354 n n # _atom_sites.entry_id 2JF6 _atom_sites.fract_transf_matrix[1][1] 0.006289 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006289 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009718 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 S55 A 1 1509 1509 S55 S55 . D 2 S55 B 1 1509 1509 S55 S55 . E 3 HOH A 1 2001 2001 HOH HOH . E 3 HOH A 2 2002 2002 HOH HOH . E 3 HOH A 3 2003 2003 HOH HOH . E 3 HOH A 4 2004 2004 HOH HOH . E 3 HOH A 5 2005 2005 HOH HOH . E 3 HOH A 6 2006 2006 HOH HOH . E 3 HOH A 7 2007 2007 HOH HOH . E 3 HOH A 8 2008 2008 HOH HOH . E 3 HOH A 9 2009 2009 HOH HOH . E 3 HOH A 10 2010 2010 HOH HOH . E 3 HOH A 11 2011 2011 HOH HOH . E 3 HOH A 12 2012 2012 HOH HOH . E 3 HOH A 13 2013 2013 HOH HOH . E 3 HOH A 14 2014 2014 HOH HOH . E 3 HOH A 15 2015 2015 HOH HOH . E 3 HOH A 16 2016 2016 HOH HOH . E 3 HOH A 17 2017 2017 HOH HOH . E 3 HOH A 18 2018 2018 HOH HOH . E 3 HOH A 19 2019 2019 HOH HOH . E 3 HOH A 20 2020 2020 HOH HOH . E 3 HOH A 21 2021 2021 HOH HOH . E 3 HOH A 22 2022 2022 HOH HOH . E 3 HOH A 23 2023 2023 HOH HOH . E 3 HOH A 24 2024 2024 HOH HOH . E 3 HOH A 25 2025 2025 HOH HOH . E 3 HOH A 26 2026 2026 HOH HOH . E 3 HOH A 27 2027 2027 HOH HOH . E 3 HOH A 28 2028 2028 HOH HOH . E 3 HOH A 29 2029 2029 HOH HOH . E 3 HOH A 30 2030 2030 HOH HOH . E 3 HOH A 31 2031 2031 HOH HOH . E 3 HOH A 32 2032 2032 HOH HOH . E 3 HOH A 33 2033 2033 HOH HOH . E 3 HOH A 34 2034 2034 HOH HOH . E 3 HOH A 35 2035 2035 HOH HOH . E 3 HOH A 36 2036 2036 HOH HOH . E 3 HOH A 37 2037 2037 HOH HOH . E 3 HOH A 38 2038 2038 HOH HOH . E 3 HOH A 39 2039 2039 HOH HOH . E 3 HOH A 40 2040 2040 HOH HOH . E 3 HOH A 41 2041 2041 HOH HOH . E 3 HOH A 42 2042 2042 HOH HOH . F 3 HOH B 1 2001 2001 HOH HOH . F 3 HOH B 2 2002 2002 HOH HOH . F 3 HOH B 3 2003 2003 HOH HOH . F 3 HOH B 4 2004 2004 HOH HOH . F 3 HOH B 5 2005 2005 HOH HOH . F 3 HOH B 6 2006 2006 HOH HOH . F 3 HOH B 7 2007 2007 HOH HOH . F 3 HOH B 8 2008 2008 HOH HOH . F 3 HOH B 9 2009 2009 HOH HOH . F 3 HOH B 10 2010 2010 HOH HOH . F 3 HOH B 11 2011 2011 HOH HOH . F 3 HOH B 12 2012 2012 HOH HOH . F 3 HOH B 13 2013 2013 HOH HOH . F 3 HOH B 14 2014 2014 HOH HOH . F 3 HOH B 15 2015 2015 HOH HOH . F 3 HOH B 16 2016 2016 HOH HOH . F 3 HOH B 17 2017 2017 HOH HOH . F 3 HOH B 18 2018 2018 HOH HOH . F 3 HOH B 19 2019 2019 HOH HOH . F 3 HOH B 20 2020 2020 HOH HOH . F 3 HOH B 21 2021 2021 HOH HOH . F 3 HOH B 22 2022 2022 HOH HOH . F 3 HOH B 23 2023 2023 HOH HOH . F 3 HOH B 24 2024 2024 HOH HOH . F 3 HOH B 25 2025 2025 HOH HOH . F 3 HOH B 26 2026 2026 HOH HOH . F 3 HOH B 27 2027 2027 HOH HOH . F 3 HOH B 28 2028 2028 HOH HOH . F 3 HOH B 29 2029 2029 HOH HOH . F 3 HOH B 30 2030 2030 HOH HOH . F 3 HOH B 31 2031 2031 HOH HOH . F 3 HOH B 32 2032 2032 HOH HOH . F 3 HOH B 33 2033 2033 HOH HOH . F 3 HOH B 34 2034 2034 HOH HOH . F 3 HOH B 35 2035 2035 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C21 S55 . . . D 2 32.707 112.923 -28.371 1 23.01 ? C21 S55 1509 B 1 HETATM 2 O O22 S55 . . . D 2 32.863 113.931 -29.4 1 22.3 ? O22 S55 1509 B 1 HETATM 3 C C23 S55 . . . D 2 32.596 113.546 -30.76 1 26.44 ? C23 S55 1509 B 1 HETATM 4 C C20 S55 . . . D 2 31.421 112.22 -28.313 1 20.61 ? C20 S55 1509 B 1 HETATM 5 C C19 S55 . . . D 2 30.816 111.881 -29.459 1 16.43 ? C19 S55 1509 B 1 HETATM 6 O O18 S55 . . . D 2 29.718 110.93 -29.449 1 16.68 ? O18 S55 1509 B 1 HETATM 7 C C17 S55 . . . D 2 29.144 110.396 -28.265 1 19.38 ? C17 S55 1509 B 1 HETATM 8 O O27 S55 . . . D 2 28.895 109.014 -28.471 1 21.52 ? O27 S55 1509 B 1 HETATM 9 C C28 S55 . . . D 2 27.508 108.669 -28.563 1 23.73 ? C28 S55 1509 B 1 HETATM 10 O O33 S55 . . . D 2 26.722 109.589 -27.809 1 21.09 ? O33 S55 1509 B 1 HETATM 11 C C32 S55 . . . D 2 25.38 109.162 -27.788 1 16.69 ? C32 S55 1509 B 1 HETATM 12 C C33 S55 . . . D 2 24.575 110.373 -27.41 1 12.33 ? C33 S55 1509 B 1 HETATM 13 O O34 S55 . . . D 2 25.551 111.407 -27.198 1 17.68 ? O34 S55 1509 B 1 HETATM 14 C C31 S55 . . . D 2 25.388 108.047 -26.768 1 19.36 ? C31 S55 1509 B 1 HETATM 15 O O35 S55 . . . D 2 24.074 107.673 -26.419 1 18.66 ? O35 S55 1509 B 1 HETATM 16 C C30 S55 . . . D 2 26.018 106.842 -27.428 1 20.01 ? C30 S55 1509 B 1 HETATM 17 O O36 S55 . . . D 2 26.246 105.844 -26.436 1 15.02 ? O36 S55 1509 B 1 HETATM 18 C C29 S55 . . . D 2 27.345 107.21 -28.095 1 25.06 ? C29 S55 1509 B 1 HETATM 19 O O37 S55 . . . D 2 27.501 106.393 -29.264 1 30.08 ? O37 S55 1509 B 1 HETATM 20 C C16 S55 . . . D 2 30.1 110.498 -27.097 1 19.86 ? C16 S55 1509 B 1 HETATM 21 C C25 S55 . . . D 2 29.362 110.105 -25.831 1 17.95 ? C25 S55 1509 B 1 HETATM 22 C C26 S55 . . . D 2 30.415 109.679 -24.841 1 15.37 ? C26 S55 1509 B 1 HETATM 23 C C15 S55 . . . D 2 30.786 111.867 -26.987 1 20.2 ? C15 S55 1509 B 1 HETATM 24 C C14 S55 . . . D 2 29.827 112.948 -26.472 1 17.85 ? C14 S55 1509 B 1 HETATM 25 C C13 S55 . . . D 2 30.358 114.372 -26.573 1 17.2 ? C13 S55 1509 B 1 HETATM 26 N N12 S55 . . . D 2 31.611 114.616 -25.87 1 13.04 ? N12 S55 1509 B 1 HETATM 27 C C11 S55 . . . D 2 32.052 115.987 -25.673 1 10.97 ? C11 S55 1509 B 1 HETATM 28 C C10 S55 . . . D 2 31.045 116.845 -24.911 1 15.2 ? C10 S55 1509 B 1 HETATM 29 C C7 S55 . . . D 2 29.65 116.358 -25.221 1 15.29 ? C7 S55 1509 B 1 HETATM 30 C C8 S55 . . . D 2 29.351 115.242 -25.968 1 15.77 ? C8 S55 1509 B 1 HETATM 31 C C5 S55 . . . D 2 28.434 116.883 -24.848 1 15.32 ? C5 S55 1509 B 1 HETATM 32 C C4 S55 . . . D 2 27.438 116.086 -25.369 1 16.21 ? C4 S55 1509 B 1 HETATM 33 N N9 S55 . . . D 2 28.023 115.087 -26.049 1 15.43 ? N9 S55 1509 B 1 HETATM 34 C C6 S55 . . . D 2 28.118 118.002 -24.087 1 19.99 ? C6 S55 1509 B 1 HETATM 35 C C1 S55 . . . D 2 26.769 118.31 -23.857 1 17.94 ? C1 S55 1509 B 1 HETATM 36 C C2 S55 . . . D 2 25.748 117.524 -24.384 1 15.97 ? C2 S55 1509 B 1 HETATM 37 C C3 S55 . . . D 2 26.095 116.405 -25.137 1 18.44 ? C3 S55 1509 B 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 37 #