data_2JFA
#
_model_server_result.job_id            OAPwJmG3xd4dQ9Z43cfi9w 
_model_server_result.datetime_utc      '2024-11-22 20:34:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2jfa 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":600}' 
#
_entry.id    2JFA 
#
_exptl.entry_id    2JFA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              473.583 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            RALOXIFENE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2JFA 
_cell.length_a            126.573 
_cell.length_b            126.573 
_cell.length_c            113.429 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2JFA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PQS 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B C LYS 135 B LYS 416 1_555 B N CCS 136 B CCS 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale2 B C CCS 136 B CCS 417 1_555 B N VAL 137 B VAL 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
#
_chem_comp.formula           'C28 H27 N O4 S' 
_chem_comp.formula_weight    473.583 
_chem_comp.id                RAL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              RALOXIFENE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 RAL doub 296 n y 
C1 C14 RAL sing 297 n y 
C1 H1 RAL sing 298 n n 
C2 C3 RAL sing 299 n y 
C2 H2 RAL sing 300 n n 
C3 O3 RAL sing 301 n n 
C3 C4 RAL doub 302 n y 
O3 HO3 RAL sing 303 n n 
C4 C5 RAL sing 304 n y 
C4 H4 RAL sing 305 n n 
C5 S6 RAL sing 306 n y 
C5 C14 RAL doub 307 n y 
S6 C7 RAL sing 308 n y 
C7 C8 RAL sing 309 n y 
C7 C15 RAL doub 310 n y 
C8 C9 RAL sing 311 n y 
C8 C13 RAL doub 312 n y 
C9 C10 RAL doub 313 n y 
C9 H9 RAL sing 314 n n 
C10 C11 RAL sing 315 n y 
C10 H10 RAL sing 316 n n 
C11 O11 RAL sing 317 n n 
C11 C12 RAL doub 318 n y 
O11 HO1 RAL sing 319 n n 
C12 C13 RAL sing 320 n y 
C12 H12 RAL sing 321 n n 
C13 H13 RAL sing 322 n n 
C14 C15 RAL sing 323 n y 
C15 C16 RAL sing 324 n n 
C16 O16 RAL doub 325 n n 
C16 C17 RAL sing 326 n n 
C17 C18 RAL doub 327 n y 
C17 C22 RAL sing 328 n y 
C18 C19 RAL sing 329 n y 
C18 H18 RAL sing 330 n n 
C19 C20 RAL doub 331 n y 
C19 H19 RAL sing 332 n n 
C20 C21 RAL sing 333 n y 
C20 O23 RAL sing 334 n n 
C21 C22 RAL doub 335 n y 
C21 H21 RAL sing 336 n n 
C22 H22 RAL sing 337 n n 
O23 C24 RAL sing 338 n n 
C24 C25 RAL sing 339 n n 
C24 H241 RAL sing 340 n n 
C24 H242 RAL sing 341 n n 
C25 N26 RAL sing 342 n n 
C25 H251 RAL sing 343 n n 
C25 H252 RAL sing 344 n n 
N26 C27 RAL sing 345 n n 
N26 C31 RAL sing 346 n n 
C27 C28 RAL sing 347 n n 
C27 H271 RAL sing 348 n n 
C27 H272 RAL sing 349 n n 
C28 C29 RAL sing 350 n n 
C28 H281 RAL sing 351 n n 
C28 H282 RAL sing 352 n n 
C29 C30 RAL sing 353 n n 
C29 H291 RAL sing 354 n n 
C29 H292 RAL sing 355 n n 
C30 C31 RAL sing 356 n n 
C30 H301 RAL sing 357 n n 
C30 H302 RAL sing 358 n n 
C31 H311 RAL sing 359 n n 
C31 H312 RAL sing 360 n n 
#
_atom_sites.entry_id                     2JFA 
_atom_sites.fract_transf_matrix[1][1]    0.007901 
_atom_sites.fract_transf_matrix[1][2]    0.004561 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009123 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008816 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 4 RAL A 1 600 600 RAL RAL . 
F 5 SO4 A 1 610 610 SO4 SO4 . 
G 5 SO4 A 1 620 620 SO4 SO4 . 
H 4 RAL B 1 600 600 RAL RAL . 
I 5 SO4 B 1 610 610 SO4 SO4 . 
J 5 SO4 B 1 620 620 SO4 SO4 . 
K 6 HOH A 1 2001 2001 HOH HOH . 
K 6 HOH A 2 2002 2002 HOH HOH . 
K 6 HOH A 3 2003 2003 HOH HOH . 
K 6 HOH A 4 2004 2004 HOH HOH . 
K 6 HOH A 5 2005 2005 HOH HOH . 
K 6 HOH A 6 2006 2006 HOH HOH . 
K 6 HOH A 7 2007 2007 HOH HOH . 
K 6 HOH A 8 2008 2008 HOH HOH . 
K 6 HOH A 9 2009 2009 HOH HOH . 
K 6 HOH A 10 2010 2010 HOH HOH . 
K 6 HOH A 11 2011 2011 HOH HOH . 
K 6 HOH A 12 2012 2012 HOH HOH . 
K 6 HOH A 13 2013 2013 HOH HOH . 
K 6 HOH A 14 2014 2014 HOH HOH . 
K 6 HOH A 15 2015 2015 HOH HOH . 
K 6 HOH A 16 2016 2016 HOH HOH . 
K 6 HOH A 17 2017 2017 HOH HOH . 
K 6 HOH A 18 2018 2018 HOH HOH . 
K 6 HOH A 19 2019 2019 HOH HOH . 
K 6 HOH A 20 2020 2020 HOH HOH . 
K 6 HOH A 21 2021 2021 HOH HOH . 
K 6 HOH A 22 2022 2022 HOH HOH . 
K 6 HOH A 23 2023 2023 HOH HOH . 
K 6 HOH A 24 2024 2024 HOH HOH . 
K 6 HOH A 25 2025 2025 HOH HOH . 
K 6 HOH A 26 2026 2026 HOH HOH . 
K 6 HOH A 27 2027 2027 HOH HOH . 
K 6 HOH A 28 2028 2028 HOH HOH . 
K 6 HOH A 29 2029 2029 HOH HOH . 
K 6 HOH A 30 2030 2030 HOH HOH . 
K 6 HOH A 31 2031 2031 HOH HOH . 
K 6 HOH A 32 2032 2032 HOH HOH . 
K 6 HOH A 33 2033 2033 HOH HOH . 
K 6 HOH A 34 2034 2034 HOH HOH . 
K 6 HOH A 35 2035 2035 HOH HOH . 
K 6 HOH A 36 2036 2036 HOH HOH . 
K 6 HOH A 37 2037 2037 HOH HOH . 
K 6 HOH A 38 2038 2038 HOH HOH . 
K 6 HOH A 39 2039 2039 HOH HOH . 
K 6 HOH A 40 2040 2040 HOH HOH . 
K 6 HOH A 41 2041 2041 HOH HOH . 
K 6 HOH A 42 2042 2042 HOH HOH . 
K 6 HOH A 43 2043 2043 HOH HOH . 
K 6 HOH A 44 2044 2044 HOH HOH . 
K 6 HOH A 45 2045 2045 HOH HOH . 
K 6 HOH A 46 2046 2046 HOH HOH . 
L 6 HOH B 1 2001 2001 HOH HOH . 
L 6 HOH B 2 2002 2002 HOH HOH . 
L 6 HOH B 3 2003 2003 HOH HOH . 
L 6 HOH B 4 2004 2004 HOH HOH . 
L 6 HOH B 5 2005 2005 HOH HOH . 
L 6 HOH B 6 2006 2006 HOH HOH . 
L 6 HOH B 7 2007 2007 HOH HOH . 
L 6 HOH B 8 2008 2008 HOH HOH . 
L 6 HOH B 9 2009 2009 HOH HOH . 
L 6 HOH B 10 2010 2010 HOH HOH . 
L 6 HOH B 11 2011 2011 HOH HOH . 
L 6 HOH B 12 2012 2012 HOH HOH . 
L 6 HOH B 13 2013 2013 HOH HOH . 
L 6 HOH B 14 2014 2014 HOH HOH . 
L 6 HOH B 15 2015 2015 HOH HOH . 
L 6 HOH B 16 2016 2016 HOH HOH . 
L 6 HOH B 17 2017 2017 HOH HOH . 
L 6 HOH B 18 2018 2018 HOH HOH . 
L 6 HOH B 19 2019 2019 HOH HOH . 
L 6 HOH B 20 2020 2020 HOH HOH . 
L 6 HOH B 21 2021 2021 HOH HOH . 
L 6 HOH B 22 2022 2022 HOH HOH . 
L 6 HOH B 23 2023 2023 HOH HOH . 
L 6 HOH B 24 2024 2024 HOH HOH . 
L 6 HOH B 25 2025 2025 HOH HOH . 
L 6 HOH B 26 2026 2026 HOH HOH . 
L 6 HOH B 27 2027 2027 HOH HOH . 
L 6 HOH B 28 2028 2028 HOH HOH . 
L 6 HOH B 29 2029 2029 HOH HOH . 
L 6 HOH B 30 2030 2030 HOH HOH . 
L 6 HOH B 31 2031 2031 HOH HOH . 
L 6 HOH B 32 2032 2032 HOH HOH . 
L 6 HOH B 33 2033 2033 HOH HOH . 
L 6 HOH B 34 2034 2034 HOH HOH . 
L 6 HOH B 35 2035 2035 HOH HOH . 
L 6 HOH B 36 2036 2036 HOH HOH . 
L 6 HOH B 37 2037 2037 HOH HOH . 
L 6 HOH B 38 2038 2038 HOH HOH . 
L 6 HOH B 39 2039 2039 HOH HOH . 
L 6 HOH B 40 2040 2040 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 RAL . . . H 4 -47.32 11.559 5.17 1 49.96 ? C1 RAL 600 B 1 
HETATM 2 C C2 RAL . . . H 4 -48.677 11.386 4.934 1 50.24 ? C2 RAL 600 B 1 
HETATM 3 C C3 RAL . . . H 4 -49.59 12.402 5.187 1 50.02 ? C3 RAL 600 B 1 
HETATM 4 O O3 RAL . . . H 4 -50.904 12.165 4.929 1 49.95 ? O3 RAL 600 B 1 
HETATM 5 C C4 RAL . . . H 4 -49.172 13.64 5.684 1 49.85 ? C4 RAL 600 B 1 
HETATM 6 C C5 RAL . . . H 4 -47.824 13.847 5.912 1 50.74 ? C5 RAL 600 B 1 
HETATM 7 S S6 RAL . . . H 4 -47.159 15.278 6.485 1 49.99 ? S6 RAL 600 B 1 
HETATM 8 C C7 RAL . . . H 4 -45.557 14.648 6.47 1 52.76 ? C7 RAL 600 B 1 
HETATM 9 C C8 RAL . . . H 4 -44.425 15.511 6.908 1 53.53 ? C8 RAL 600 B 1 
HETATM 10 C C9 RAL . . . H 4 -43.33 15.602 6.086 1 59.51 ? C9 RAL 600 B 1 
HETATM 11 C C10 RAL . . . H 4 -42.226 16.384 6.414 1 61.07 ? C10 RAL 600 B 1 
HETATM 12 C C11 RAL . . . H 4 -42.189 17.09 7.596 1 60.45 ? C11 RAL 600 B 1 
HETATM 13 O O11 RAL . . . H 4 -41.069 17.822 7.844 1 59.28 ? O11 RAL 600 B 1 
HETATM 14 C C12 RAL . . . H 4 -43.291 17.02 8.458 1 60.57 ? C12 RAL 600 B 1 
HETATM 15 C C13 RAL . . . H 4 -44.401 16.217 8.108 1 59.26 ? C13 RAL 600 B 1 
HETATM 16 C C14 RAL . . . H 4 -46.89 12.763 5.653 1 49.07 ? C14 RAL 600 B 1 
HETATM 17 C C15 RAL . . . H 4 -45.579 13.29 5.994 1 49.54 ? C15 RAL 600 B 1 
HETATM 18 C C16 RAL . . . H 4 -44.385 12.479 5.809 1 49.37 ? C16 RAL 600 B 1 
HETATM 19 O O16 RAL . . . H 4 -43.876 11.994 6.785 1 53.29 ? O16 RAL 600 B 1 
HETATM 20 C C17 RAL . . . H 4 -43.79 12.351 4.436 1 46.61 ? C17 RAL 600 B 1 
HETATM 21 C C18 RAL . . . H 4 -44.23 13.188 3.411 1 46.52 ? C18 RAL 600 B 1 
HETATM 22 C C19 RAL . . . H 4 -43.687 13.114 2.136 1 46.17 ? C19 RAL 600 B 1 
HETATM 23 C C20 RAL . . . H 4 -42.681 12.2 1.871 1 47.11 ? C20 RAL 600 B 1 
HETATM 24 C C21 RAL . . . H 4 -42.239 11.351 2.902 1 46.03 ? C21 RAL 600 B 1 
HETATM 25 C C22 RAL . . . H 4 -42.788 11.435 4.177 1 45.48 ? C22 RAL 600 B 1 
HETATM 26 O O23 RAL . . . H 4 -42.167 12.154 0.602 1 47.11 ? O23 RAL 600 B 1 
HETATM 27 C C24 RAL . . . H 4 -41.276 11.099 0.213 1 49.66 ? C24 RAL 600 B 1 
HETATM 28 C C25 RAL . . . H 4 -40.824 11.153 -1.239 1 50.33 ? C25 RAL 600 B 1 
HETATM 29 N N26 RAL . . . H 4 -41.912 10.809 -2.174 1 52.12 ? N26 RAL 600 B 1 
HETATM 30 C C27 RAL . . . H 4 -42.891 11.92 -2.213 1 53.09 ? C27 RAL 600 B 1 
HETATM 31 C C28 RAL . . . H 4 -43.773 11.959 -3.457 1 53.58 ? C28 RAL 600 B 1 
HETATM 32 C C29 RAL . . . H 4 -42.944 11.801 -4.722 1 52.71 ? C29 RAL 600 B 1 
HETATM 33 C C30 RAL . . . H 4 -42.258 10.458 -4.609 1 53.36 ? C30 RAL 600 B 1 
HETATM 34 C C31 RAL . . . H 4 -41.257 10.556 -3.471 1 52.95 ? C31 RAL 600 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           269 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           34 
#