data_2JFK # _model_server_result.job_id wSg0AWVhDuFXQQagnlv6WQ _model_server_result.datetime_utc '2024-10-18 16:29:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2jfk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1823}' # _entry.id 2JFK # _exptl.entry_id 2JFK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2JFK _cell.length_a 82.917 _cell.length_b 91.41 _cell.length_c 261.609 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2JFK _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,I 1 1 B,F,J 2 1 C,G,K 3 1 D,H,L 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ALA 243 A ALA 641 1_555 A N MCS 244 A MCS 642 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale2 A C MCS 244 A MCS 642 1_555 A N HIS 245 A HIS 643 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale3 B C ALA 243 B ALA 641 1_555 B N MCS 244 B MCS 642 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale4 B C MCS 244 B MCS 642 1_555 B N HIS 245 B HIS 643 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale5 C C ALA 243 C ALA 641 1_555 C N MCS 244 C MCS 642 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale6 C C MCS 244 C MCS 642 1_555 C N HIS 245 C HIS 643 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale7 D C ALA 243 D ALA 641 1_555 D N MCS 244 D MCS 642 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale8 D C MCS 244 D MCS 642 1_555 D N HIS 245 D HIS 643 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A COA sing 70 n y N1A C6A COA doub 71 n y C2A N3A COA doub 72 n y C2A H2A COA sing 73 n n N3A C4A COA sing 74 n y C4A C5A COA doub 75 n y C4A N9A COA sing 76 n y C5A C6A COA sing 77 n y C5A N7A COA sing 78 n y C6A N6A COA sing 79 n n N6A H61A COA sing 80 n n N6A H62A COA sing 81 n n N7A C8A COA doub 82 n y C8A N9A COA sing 83 n y C8A H8A COA sing 84 n n N9A C1B COA sing 85 n n C1B C2B COA sing 86 n n C1B O4B COA sing 87 n n C1B H1B COA sing 88 n n C2B O2B COA sing 89 n n C2B C3B COA sing 90 n n C2B H2B COA sing 91 n n O2B HO2A COA sing 92 n n C3B O3B COA sing 93 n n C3B C4B COA sing 94 n n C3B H3B COA sing 95 n n O3B P3B COA sing 96 n n P3B O7A COA doub 97 n n P3B O8A COA sing 98 n n P3B O9A COA sing 99 n n O8A HOA8 COA sing 100 n n O9A HOA9 COA sing 101 n n C4B O4B COA sing 102 n n C4B C5B COA sing 103 n n C4B H4B COA sing 104 n n C5B O5B COA sing 105 n n C5B H51A COA sing 106 n n C5B H52A COA sing 107 n n O5B P1A COA sing 108 n n P1A O1A COA doub 109 n n P1A O2A COA sing 110 n n P1A O3A COA sing 111 n n O2A HOA2 COA sing 112 n n O3A P2A COA sing 113 n n P2A O4A COA doub 114 n n P2A O5A COA sing 115 n n P2A O6A COA sing 116 n n O5A HOA5 COA sing 117 n n O6A CCP COA sing 118 n n CBP CCP COA sing 119 n n CBP CDP COA sing 120 n n CBP CEP COA sing 121 n n CBP CAP COA sing 122 n n CCP H121 COA sing 123 n n CCP H122 COA sing 124 n n CDP H131 COA sing 125 n n CDP H132 COA sing 126 n n CDP H133 COA sing 127 n n CEP H141 COA sing 128 n n CEP H142 COA sing 129 n n CEP H143 COA sing 130 n n CAP OAP COA sing 131 n n CAP C9P COA sing 132 n n CAP H10 COA sing 133 n n OAP HO1 COA sing 134 n n C9P O9P COA doub 135 n n C9P N8P COA sing 136 n n N8P C7P COA sing 137 n n N8P HN8 COA sing 138 n n C7P C6P COA sing 139 n n C7P H71 COA sing 140 n n C7P H72 COA sing 141 n n C6P C5P COA sing 142 n n C6P H61 COA sing 143 n n C6P H62 COA sing 144 n n C5P O5P COA doub 145 n n C5P N4P COA sing 146 n n N4P C3P COA sing 147 n n N4P HN4 COA sing 148 n n C3P C2P COA sing 149 n n C3P H31 COA sing 150 n n C3P H32 COA sing 151 n n C2P S1P COA sing 152 n n C2P H21 COA sing 153 n n C2P H22 COA sing 154 n n S1P HS1 COA sing 155 n n # _atom_sites.entry_id 2JFK _atom_sites.fract_transf_matrix[1][1] 0.01206 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01094 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003822 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 COA A 1 1820 1820 COA COA . F 2 COA B 1 1823 1823 COA COA . G 2 COA C 1 1824 1824 COA COA . H 2 COA D 1 1821 1821 COA COA . I 3 HOH A 1 2001 2001 HOH HOH . I 3 HOH A 2 2002 2002 HOH HOH . I 3 HOH A 3 2003 2003 HOH HOH . I 3 HOH A 4 2004 2004 HOH HOH . I 3 HOH A 5 2005 2005 HOH HOH . J 3 HOH B 1 2001 2001 HOH HOH . J 3 HOH B 2 2002 2002 HOH HOH . J 3 HOH B 3 2003 2003 HOH HOH . J 3 HOH B 4 2004 2004 HOH HOH . J 3 HOH B 5 2005 2005 HOH HOH . K 3 HOH C 1 2001 2001 HOH HOH . K 3 HOH C 2 2002 2002 HOH HOH . K 3 HOH C 3 2003 2003 HOH HOH . K 3 HOH C 4 2004 2004 HOH HOH . K 3 HOH C 5 2005 2005 HOH HOH . K 3 HOH C 6 2006 2006 HOH HOH . K 3 HOH C 7 2007 2007 HOH HOH . K 3 HOH C 8 2008 2008 HOH HOH . K 3 HOH C 9 2009 2009 HOH HOH . K 3 HOH C 10 2010 2010 HOH HOH . K 3 HOH C 11 2011 2011 HOH HOH . K 3 HOH C 12 2012 2012 HOH HOH . K 3 HOH C 13 2013 2013 HOH HOH . K 3 HOH C 14 2014 2014 HOH HOH . K 3 HOH C 15 2015 2015 HOH HOH . K 3 HOH C 16 2016 2016 HOH HOH . K 3 HOH C 17 2017 2017 HOH HOH . K 3 HOH C 18 2018 2018 HOH HOH . K 3 HOH C 19 2019 2019 HOH HOH . K 3 HOH C 20 2020 2020 HOH HOH . L 3 HOH D 1 2001 2001 HOH HOH . L 3 HOH D 2 2002 2002 HOH HOH . L 3 HOH D 3 2003 2003 HOH HOH . L 3 HOH D 4 2004 2004 HOH HOH . L 3 HOH D 5 2005 2005 HOH HOH . L 3 HOH D 6 2006 2006 HOH HOH . L 3 HOH D 7 2007 2007 HOH HOH . L 3 HOH D 8 2008 2008 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C7P COA . . . F 2 -7.326 -4.493 5.539 1 27.86 ? C7P COA 1823 B 1 HETATM 2 C C6P COA . . . F 2 -7.842 -3.737 6.764 1 28.15 ? C6P COA 1823 B 1 HETATM 3 C C5P COA . . . F 2 -9.309 -3.452 6.565 1 27.54 ? C5P COA 1823 B 1 HETATM 4 O O5P COA . . . F 2 -9.604 -2.349 6.111 1 24.54 ? O5P COA 1823 B 1 HETATM 5 N N4P COA . . . F 2 -10.179 -4.434 6.874 1 43.18 ? N4P COA 1823 B 1 HETATM 6 C C3P COA . . . F 2 -11.64 -4.355 6.777 1 35.08 ? C3P COA 1823 B 1 HETATM 7 C C2P COA . . . F 2 -12.324 -4.675 8.116 1 38.7 ? C2P COA 1823 B 1 HETATM 8 S S1P COA . . . F 2 -12.605 -6.445 8.443 1 38.94 ? S1P COA 1823 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #