data_2JG9
#
_model_server_result.job_id            P0dK4pDXwqSHkZrs29wAqA 
_model_server_result.datetime_utc      '2024-11-29 17:01:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2jg9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":1224}' 
#
_entry.id    2JG9 
#
_exptl.entry_id    2JG9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              40.078 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CALCIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         92.45 
_cell.angle_beta          92.65 
_cell.angle_gamma         113.53 
_cell.entry_id            2JG9 
_cell.length_a            48.15 
_cell.length_b            48.24 
_cell.length_c            87.79 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2JG9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PQS trimeric 3 software_defined_assembly 1 
PQS trimeric 3 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,G,I,J,K 1 1 
D,E,F,H,L,M,N 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 61 A CYS 150 1_555 A SG CYS 79 A CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
disulf ? disulf2 B SG CYS 64 B CYS 154 1_555 B SG CYS 81 B CYS 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
disulf ? disulf3 C SG CYS 65 C CYS 151 1_555 C SG CYS 79 C CYS 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
disulf ? disulf4 D SG CYS 61 D CYS 150 1_555 D SG CYS 79 D CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? 
disulf ? disulf5 E SG CYS 64 E CYS 154 1_555 E SG CYS 81 E CYS 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf6 F SG CYS 65 F CYS 151 1_555 F SG CYS 79 F CYS 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? 
metalc ? metalc1 A OE1 GLN 88 A GLN 177 1_555 G CA CA . B CA 1224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.562 ? 
metalc ? metalc2 B OD2 ASP 82 B ASP 172 1_555 G CA CA . B CA 1224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? 
metalc ? metalc3 B O TYR 83 B TYR 173 1_555 G CA CA . B CA 1224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? 
metalc ? metalc4 B OE1 GLN 89 B GLN 179 1_555 G CA CA . B CA 1224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? 
metalc ? metalc5 G CA CA . B CA 1224 1_555 J O HOH . B HOH 2008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.505 ? 
metalc ? metalc6 D OE1 GLN 88 D GLN 177 1_555 H CA CA . E CA 1224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? 
metalc ? metalc7 L O HOH . D HOH 2017 1_555 H CA CA . E CA 1224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? 
metalc ? metalc8 E OD2 ASP 82 E ASP 172 1_555 H CA CA . E CA 1224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? 
metalc ? metalc9 E O TYR 83 E TYR 173 1_555 H CA CA . E CA 1224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? 
metalc ? metalc10 E OE1 GLN 89 E GLN 179 1_555 H CA CA . E CA 1224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? 
#
_chem_comp.formula           'Ca 2' 
_chem_comp.formula_weight    40.078 
_chem_comp.id                CA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CALCIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     2JG9 
_atom_sites.fract_transf_matrix[1][1]    0.020768 
_atom_sites.fract_transf_matrix[1][2]    0.009043 
_atom_sites.fract_transf_matrix[1][3]    0.001569 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.02261 
_atom_sites.fract_transf_matrix[2][3]    0.001514 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011429 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 CA B 1 1224 1224 CA CA . 
H 4 CA E 1 1224 1224 CA CA . 
I 5 HOH A 1 2001 2001 HOH HOH . 
I 5 HOH A 2 2002 2002 HOH HOH . 
I 5 HOH A 3 2003 2003 HOH HOH . 
I 5 HOH A 4 2004 2004 HOH HOH . 
I 5 HOH A 5 2005 2005 HOH HOH . 
I 5 HOH A 6 2006 2006 HOH HOH . 
I 5 HOH A 7 2007 2007 HOH HOH . 
I 5 HOH A 8 2008 2008 HOH HOH . 
I 5 HOH A 9 2009 2009 HOH HOH . 
I 5 HOH A 10 2010 2010 HOH HOH . 
I 5 HOH A 11 2011 2011 HOH HOH . 
I 5 HOH A 12 2012 2012 HOH HOH . 
I 5 HOH A 13 2013 2013 HOH HOH . 
I 5 HOH A 14 2014 2014 HOH HOH . 
I 5 HOH A 15 2015 2015 HOH HOH . 
I 5 HOH A 16 2016 2016 HOH HOH . 
I 5 HOH A 17 2017 2017 HOH HOH . 
I 5 HOH A 18 2018 2018 HOH HOH . 
I 5 HOH A 19 2019 2019 HOH HOH . 
I 5 HOH A 20 2020 2020 HOH HOH . 
I 5 HOH A 21 2021 2021 HOH HOH . 
I 5 HOH A 22 2022 2022 HOH HOH . 
I 5 HOH A 23 2023 2023 HOH HOH . 
I 5 HOH A 24 2024 2024 HOH HOH . 
J 5 HOH B 1 2001 2001 HOH HOH . 
J 5 HOH B 2 2002 2002 HOH HOH . 
J 5 HOH B 3 2003 2003 HOH HOH . 
J 5 HOH B 4 2004 2004 HOH HOH . 
J 5 HOH B 5 2005 2005 HOH HOH . 
J 5 HOH B 6 2006 2006 HOH HOH . 
J 5 HOH B 7 2007 2007 HOH HOH . 
J 5 HOH B 8 2008 2008 HOH HOH . 
J 5 HOH B 9 2009 2009 HOH HOH . 
J 5 HOH B 10 2010 2010 HOH HOH . 
K 5 HOH C 1 2001 2001 HOH HOH . 
K 5 HOH C 2 2002 2002 HOH HOH . 
K 5 HOH C 3 2003 2003 HOH HOH . 
K 5 HOH C 4 2004 2004 HOH HOH . 
K 5 HOH C 5 2005 2005 HOH HOH . 
K 5 HOH C 6 2006 2006 HOH HOH . 
K 5 HOH C 7 2007 2007 HOH HOH . 
K 5 HOH C 8 2008 2008 HOH HOH . 
K 5 HOH C 9 2009 2009 HOH HOH . 
K 5 HOH C 10 2010 2010 HOH HOH . 
K 5 HOH C 11 2011 2011 HOH HOH . 
K 5 HOH C 12 2012 2012 HOH HOH . 
K 5 HOH C 13 2013 2013 HOH HOH . 
K 5 HOH C 14 2014 2014 HOH HOH . 
K 5 HOH C 15 2015 2015 HOH HOH . 
K 5 HOH C 16 2016 2016 HOH HOH . 
K 5 HOH C 17 2017 2017 HOH HOH . 
K 5 HOH C 18 2018 2018 HOH HOH . 
K 5 HOH C 19 2019 2019 HOH HOH . 
K 5 HOH C 20 2020 2020 HOH HOH . 
K 5 HOH C 21 2021 2021 HOH HOH . 
K 5 HOH C 22 2022 2022 HOH HOH . 
K 5 HOH C 23 2023 2023 HOH HOH . 
K 5 HOH C 24 2024 2024 HOH HOH . 
K 5 HOH C 25 2025 2025 HOH HOH . 
K 5 HOH C 26 2026 2026 HOH HOH . 
L 5 HOH D 1 2001 2001 HOH HOH . 
L 5 HOH D 2 2002 2002 HOH HOH . 
L 5 HOH D 3 2003 2003 HOH HOH . 
L 5 HOH D 4 2004 2004 HOH HOH . 
L 5 HOH D 5 2005 2005 HOH HOH . 
L 5 HOH D 6 2006 2006 HOH HOH . 
L 5 HOH D 7 2007 2007 HOH HOH . 
L 5 HOH D 8 2008 2008 HOH HOH . 
L 5 HOH D 9 2009 2009 HOH HOH . 
L 5 HOH D 10 2010 2010 HOH HOH . 
L 5 HOH D 11 2011 2011 HOH HOH . 
L 5 HOH D 12 2012 2012 HOH HOH . 
L 5 HOH D 13 2013 2013 HOH HOH . 
L 5 HOH D 14 2014 2014 HOH HOH . 
L 5 HOH D 15 2015 2015 HOH HOH . 
L 5 HOH D 16 2016 2016 HOH HOH . 
L 5 HOH D 17 2017 2017 HOH HOH . 
L 5 HOH D 18 2018 2018 HOH HOH . 
L 5 HOH D 19 2019 2019 HOH HOH . 
L 5 HOH D 20 2020 2020 HOH HOH . 
L 5 HOH D 21 2021 2021 HOH HOH . 
L 5 HOH D 22 2022 2022 HOH HOH . 
L 5 HOH D 23 2023 2023 HOH HOH . 
L 5 HOH D 24 2024 2024 HOH HOH . 
L 5 HOH D 25 2025 2025 HOH HOH . 
M 5 HOH E 1 2001 2001 HOH HOH . 
M 5 HOH E 2 2002 2002 HOH HOH . 
M 5 HOH E 3 2003 2003 HOH HOH . 
M 5 HOH E 4 2004 2004 HOH HOH . 
M 5 HOH E 5 2005 2005 HOH HOH . 
M 5 HOH E 6 2006 2006 HOH HOH . 
M 5 HOH E 7 2007 2007 HOH HOH . 
M 5 HOH E 8 2008 2008 HOH HOH . 
M 5 HOH E 9 2009 2009 HOH HOH . 
M 5 HOH E 10 2010 2010 HOH HOH . 
N 5 HOH F 1 2001 2001 HOH HOH . 
N 5 HOH F 2 2002 2002 HOH HOH . 
N 5 HOH F 3 2003 2003 HOH HOH . 
N 5 HOH F 4 2004 2004 HOH HOH . 
N 5 HOH F 5 2005 2005 HOH HOH . 
N 5 HOH F 6 2006 2006 HOH HOH . 
N 5 HOH F 7 2007 2007 HOH HOH . 
N 5 HOH F 8 2008 2008 HOH HOH . 
N 5 HOH F 9 2009 2009 HOH HOH . 
N 5 HOH F 10 2010 2010 HOH HOH . 
N 5 HOH F 11 2011 2011 HOH HOH . 
N 5 HOH F 12 2012 2012 HOH HOH . 
N 5 HOH F 13 2013 2013 HOH HOH . 
N 5 HOH F 14 2014 2014 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CA 
_atom_site.label_atom_id         CA 
_atom_site.label_comp_id         CA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         H 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               -4.25 
_atom_site.Cartn_y               -7.636 
_atom_site.Cartn_z               -23.996 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        9.38 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CA 
_atom_site.auth_comp_id          CA 
_atom_site.auth_seq_id           1224 
_atom_site.auth_asym_id          E 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           289 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#