data_2JGB # _model_server_result.job_id sNzBA47O9Wly_OgHfqJJTQ _model_server_result.datetime_utc '2024-10-19 10:36:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2jgb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1000}' # _entry.id 2JGB # _exptl.entry_id 2JGB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 539.223 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "7N-METHYL-8-HYDROGUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2JGB _cell.length_a 43.499 _cell.length_b 49.299 _cell.length_c 103.767 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2JGB _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H20 N5 O14 P3' _chem_comp.formula_weight 539.223 _chem_comp.id MGT _chem_comp.mon_nstd_flag n _chem_comp.name "7N-METHYL-8-HYDROGUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G MGT doub 237 n n PG O2G MGT sing 238 n n PG O3G MGT sing 239 n n PG O3B MGT sing 240 n n O2G HOG2 MGT sing 241 n n O3G HOG3 MGT sing 242 n n O3B PB MGT sing 243 n n PB O1B MGT doub 244 n n PB O2B MGT sing 245 n n PB O3A MGT sing 246 n n O2B HOB2 MGT sing 247 n n O3A PA MGT sing 248 n n PA O1A MGT doub 249 n n PA O2A MGT sing 250 n n PA O5' MGT sing 251 n n O2A HOA2 MGT sing 252 n n O5' C5' MGT sing 253 n n C5' C4' MGT sing 254 n n C5' "H5'1" MGT sing 255 n n C5' "H5'2" MGT sing 256 n n C4' O4' MGT sing 257 n n C4' C3' MGT sing 258 n n C4' H4' MGT sing 259 n n O4' C1' MGT sing 260 n n C3' O3' MGT sing 261 n n C3' C2' MGT sing 262 n n C3' H3' MGT sing 263 n n O3' HO3' MGT sing 264 n n C2' O2' MGT sing 265 n n C2' C1' MGT sing 266 n n C2' H2' MGT sing 267 n n O2' HO2' MGT sing 268 n n C1' N9 MGT sing 269 n n C1' H1' MGT sing 270 n n N9 C8 MGT sing 271 n n N9 C4 MGT sing 272 n n C8 N7 MGT sing 273 n n C8 H81 MGT sing 274 n n C8 H82 MGT sing 275 n n N7 CM7 MGT sing 276 n n N7 C5 MGT sing 277 n n CM7 HM71 MGT sing 278 n n CM7 HM72 MGT sing 279 n n CM7 HM73 MGT sing 280 n n C5 C6 MGT sing 281 n n C5 C4 MGT doub 282 n n C6 O6 MGT doub 283 n n C6 N1 MGT sing 284 n n N1 C2 MGT sing 285 n n N1 HN1 MGT sing 286 n n C2 N2 MGT sing 287 n n C2 N3 MGT doub 288 n n N2 HN21 MGT sing 289 n n N2 HN22 MGT sing 290 n n N3 C4 MGT sing 291 n n # _atom_sites.entry_id 2JGB _atom_sites.fract_transf_matrix[1][1] 0.022989 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020284 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009637 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MGT B 1 1000 1000 MGT MGT . D 4 HOH A 1 2001 2001 HOH HOH . D 4 HOH A 2 2002 2002 HOH HOH . D 4 HOH A 3 2003 2003 HOH HOH . D 4 HOH A 4 2004 2004 HOH HOH . D 4 HOH A 5 2005 2005 HOH HOH . D 4 HOH A 6 2006 2006 HOH HOH . D 4 HOH A 7 2007 2007 HOH HOH . D 4 HOH A 8 2008 2008 HOH HOH . D 4 HOH A 9 2009 2009 HOH HOH . D 4 HOH A 10 2010 2010 HOH HOH . D 4 HOH A 11 2011 2011 HOH HOH . D 4 HOH A 12 2012 2012 HOH HOH . D 4 HOH A 13 2013 2013 HOH HOH . D 4 HOH A 14 2014 2014 HOH HOH . D 4 HOH A 15 2015 2015 HOH HOH . D 4 HOH A 16 2016 2016 HOH HOH . D 4 HOH A 17 2017 2017 HOH HOH . D 4 HOH A 18 2018 2018 HOH HOH . D 4 HOH A 19 2019 2019 HOH HOH . D 4 HOH A 20 2020 2020 HOH HOH . D 4 HOH A 21 2021 2021 HOH HOH . D 4 HOH A 22 2022 2022 HOH HOH . D 4 HOH A 23 2023 2023 HOH HOH . D 4 HOH A 24 2024 2024 HOH HOH . D 4 HOH A 25 2025 2025 HOH HOH . D 4 HOH A 26 2026 2026 HOH HOH . D 4 HOH A 27 2027 2027 HOH HOH . D 4 HOH A 28 2028 2028 HOH HOH . D 4 HOH A 29 2029 2029 HOH HOH . D 4 HOH A 30 2030 2030 HOH HOH . D 4 HOH A 31 2031 2031 HOH HOH . D 4 HOH A 32 2032 2032 HOH HOH . D 4 HOH A 33 2033 2033 HOH HOH . D 4 HOH A 34 2034 2034 HOH HOH . D 4 HOH A 35 2035 2035 HOH HOH . D 4 HOH A 36 2036 2036 HOH HOH . D 4 HOH A 37 2037 2037 HOH HOH . D 4 HOH A 38 2038 2038 HOH HOH . D 4 HOH A 39 2039 2039 HOH HOH . D 4 HOH A 40 2040 2040 HOH HOH . D 4 HOH A 41 2041 2041 HOH HOH . D 4 HOH A 42 2042 2042 HOH HOH . D 4 HOH A 43 2043 2043 HOH HOH . D 4 HOH A 44 2044 2044 HOH HOH . D 4 HOH A 45 2045 2045 HOH HOH . D 4 HOH A 46 2046 2046 HOH HOH . D 4 HOH A 47 2047 2047 HOH HOH . D 4 HOH A 48 2048 2048 HOH HOH . D 4 HOH A 49 2049 2049 HOH HOH . D 4 HOH A 50 2050 2050 HOH HOH . D 4 HOH A 51 2051 2051 HOH HOH . D 4 HOH A 52 2052 2052 HOH HOH . D 4 HOH A 53 2053 2053 HOH HOH . D 4 HOH A 54 2054 2054 HOH HOH . D 4 HOH A 55 2055 2055 HOH HOH . D 4 HOH A 56 2056 2056 HOH HOH . D 4 HOH A 57 2057 2057 HOH HOH . D 4 HOH A 58 2058 2058 HOH HOH . D 4 HOH A 59 2059 2059 HOH HOH . D 4 HOH A 60 2060 2060 HOH HOH . D 4 HOH A 61 2061 2061 HOH HOH . D 4 HOH A 62 2062 2062 HOH HOH . D 4 HOH A 63 2063 2063 HOH HOH . D 4 HOH A 64 2064 2064 HOH HOH . D 4 HOH A 65 2065 2065 HOH HOH . D 4 HOH A 66 2066 2066 HOH HOH . D 4 HOH A 67 2067 2067 HOH HOH . D 4 HOH A 68 2068 2068 HOH HOH . D 4 HOH A 69 2069 2069 HOH HOH . D 4 HOH A 70 2070 2070 HOH HOH . D 4 HOH A 71 2071 2071 HOH HOH . D 4 HOH A 72 2072 2072 HOH HOH . D 4 HOH A 73 2073 2073 HOH HOH . D 4 HOH A 74 2074 2074 HOH HOH . D 4 HOH A 75 2075 2075 HOH HOH . D 4 HOH A 76 2076 2076 HOH HOH . D 4 HOH A 77 2077 2077 HOH HOH . D 4 HOH A 78 2078 2078 HOH HOH . D 4 HOH A 79 2079 2079 HOH HOH . D 4 HOH A 80 2080 2080 HOH HOH . D 4 HOH A 81 2081 2081 HOH HOH . D 4 HOH A 82 2082 2082 HOH HOH . D 4 HOH A 83 2083 2083 HOH HOH . D 4 HOH A 84 2084 2084 HOH HOH . D 4 HOH A 85 2085 2085 HOH HOH . D 4 HOH A 86 2086 2086 HOH HOH . D 4 HOH A 87 2087 2087 HOH HOH . D 4 HOH A 88 2088 2088 HOH HOH . D 4 HOH A 89 2089 2089 HOH HOH . D 4 HOH A 90 2090 2090 HOH HOH . D 4 HOH A 91 2091 2091 HOH HOH . D 4 HOH A 92 2092 2092 HOH HOH . D 4 HOH A 93 2093 2093 HOH HOH . D 4 HOH A 94 2094 2094 HOH HOH . D 4 HOH A 95 2095 2095 HOH HOH . D 4 HOH A 96 2096 2096 HOH HOH . D 4 HOH A 97 2097 2097 HOH HOH . D 4 HOH A 98 2098 2098 HOH HOH . D 4 HOH A 99 2099 2099 HOH HOH . D 4 HOH A 100 2100 2100 HOH HOH . D 4 HOH A 101 2101 2101 HOH HOH . D 4 HOH A 102 2102 2102 HOH HOH . D 4 HOH A 103 2103 2103 HOH HOH . D 4 HOH A 104 2104 2104 HOH HOH . D 4 HOH A 105 2105 2105 HOH HOH . D 4 HOH A 106 2106 2106 HOH HOH . D 4 HOH A 107 2107 2107 HOH HOH . D 4 HOH A 108 2108 2108 HOH HOH . D 4 HOH A 109 2109 2109 HOH HOH . D 4 HOH A 110 2110 2110 HOH HOH . D 4 HOH A 111 2111 2111 HOH HOH . D 4 HOH A 112 2112 2112 HOH HOH . D 4 HOH A 113 2113 2113 HOH HOH . D 4 HOH A 114 2114 2114 HOH HOH . D 4 HOH A 115 2115 2115 HOH HOH . D 4 HOH A 116 2116 2116 HOH HOH . D 4 HOH A 117 2117 2117 HOH HOH . D 4 HOH A 118 2118 2118 HOH HOH . D 4 HOH A 119 2119 2119 HOH HOH . D 4 HOH A 120 2120 2120 HOH HOH . D 4 HOH A 121 2121 2121 HOH HOH . D 4 HOH A 122 2122 2122 HOH HOH . D 4 HOH A 123 2123 2123 HOH HOH . D 4 HOH A 124 2124 2124 HOH HOH . D 4 HOH A 125 2125 2125 HOH HOH . D 4 HOH A 126 2126 2126 HOH HOH . D 4 HOH A 127 2127 2127 HOH HOH . D 4 HOH A 128 2128 2128 HOH HOH . D 4 HOH A 129 2129 2129 HOH HOH . D 4 HOH A 130 2130 2130 HOH HOH . D 4 HOH A 131 2131 2131 HOH HOH . D 4 HOH A 132 2132 2132 HOH HOH . D 4 HOH A 133 2133 2133 HOH HOH . D 4 HOH A 134 2134 2134 HOH HOH . D 4 HOH A 135 2135 2135 HOH HOH . D 4 HOH A 136 2136 2136 HOH HOH . D 4 HOH A 137 2137 2137 HOH HOH . D 4 HOH A 138 2138 2138 HOH HOH . D 4 HOH A 139 2139 2139 HOH HOH . D 4 HOH A 140 2140 2140 HOH HOH . D 4 HOH A 141 2141 2141 HOH HOH . D 4 HOH A 142 2142 2142 HOH HOH . D 4 HOH A 143 2143 2143 HOH HOH . D 4 HOH A 144 2144 2144 HOH HOH . D 4 HOH A 145 2145 2145 HOH HOH . D 4 HOH A 146 2146 2146 HOH HOH . D 4 HOH A 147 2147 2147 HOH HOH . D 4 HOH A 148 2148 2148 HOH HOH . D 4 HOH A 149 2149 2149 HOH HOH . D 4 HOH A 150 2150 2150 HOH HOH . D 4 HOH A 151 2151 2151 HOH HOH . D 4 HOH A 152 2152 2152 HOH HOH . D 4 HOH A 153 2153 2153 HOH HOH . D 4 HOH A 154 2154 2154 HOH HOH . D 4 HOH A 155 2155 2155 HOH HOH . D 4 HOH A 156 2156 2156 HOH HOH . D 4 HOH A 157 2157 2157 HOH HOH . D 4 HOH A 158 2158 2158 HOH HOH . D 4 HOH A 159 2159 2159 HOH HOH . D 4 HOH A 160 2160 2160 HOH HOH . E 4 HOH B 1 2001 2001 HOH HOH . E 4 HOH B 2 2002 2002 HOH HOH . E 4 HOH B 3 2003 2003 HOH HOH . E 4 HOH B 4 2004 2004 HOH HOH . E 4 HOH B 5 2005 2005 HOH HOH . E 4 HOH B 6 2006 2006 HOH HOH . E 4 HOH B 7 2007 2007 HOH HOH . E 4 HOH B 8 2008 2008 HOH HOH . E 4 HOH B 9 2009 2009 HOH HOH . E 4 HOH B 10 2010 2010 HOH HOH . E 4 HOH B 11 2011 2011 HOH HOH . E 4 HOH B 12 2012 2012 HOH HOH . E 4 HOH B 13 2013 2013 HOH HOH . E 4 HOH B 14 2014 2014 HOH HOH . E 4 HOH B 15 2015 2015 HOH HOH . E 4 HOH B 16 2016 2016 HOH HOH . E 4 HOH B 17 2017 2017 HOH HOH . E 4 HOH B 18 2018 2018 HOH HOH . E 4 HOH B 19 2019 2019 HOH HOH . E 4 HOH B 20 2020 2020 HOH HOH . E 4 HOH B 21 2021 2021 HOH HOH . E 4 HOH B 22 2022 2022 HOH HOH . E 4 HOH B 23 2023 2023 HOH HOH . E 4 HOH B 24 2024 2024 HOH HOH . E 4 HOH B 25 2025 2025 HOH HOH . E 4 HOH B 26 2026 2026 HOH HOH . E 4 HOH B 27 2027 2027 HOH HOH . E 4 HOH B 28 2028 2028 HOH HOH . E 4 HOH B 29 2029 2029 HOH HOH . E 4 HOH B 30 2030 2030 HOH HOH . E 4 HOH B 31 2031 2031 HOH HOH . E 4 HOH B 32 2032 2032 HOH HOH . E 4 HOH B 33 2033 2033 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG MGT . . . C 3 -20.698 12.453 14.574 1 32.12 ? PG MGT 1000 B 1 HETATM 2 O O1G MGT . . . C 3 -19.759 13.59 14.896 1 31.84 ? O1G MGT 1000 B 1 HETATM 3 O O2G MGT . . . C 3 -22 12.877 13.944 1 32.79 ? O2G MGT 1000 B 1 HETATM 4 O O3G MGT . . . C 3 -20.051 11.251 13.896 1 32.5 ? O3G MGT 1000 B 1 HETATM 5 O O3B MGT . . . C 3 -21.253 11.922 16.008 1 28.34 ? O3B MGT 1000 B 1 HETATM 6 P PB MGT . . . C 3 -20.591 11.115 17.251 1 22.41 ? PB MGT 1000 B 1 HETATM 7 O O1B MGT . . . C 3 -20.684 12.024 18.467 1 24.3 ? O1B MGT 1000 B 1 HETATM 8 O O2B MGT . . . C 3 -21.245 9.761 17.306 1 22.54 ? O2B MGT 1000 B 1 HETATM 9 O O3A MGT . . . C 3 -19.021 10.969 16.915 1 22.17 ? O3A MGT 1000 B 1 HETATM 10 P PA MGT . . . C 3 -18.062 9.791 17.483 1 19.93 ? PA MGT 1000 B 1 HETATM 11 O O1A MGT . . . C 3 -18.262 9.458 18.945 1 20.61 ? O1A MGT 1000 B 1 HETATM 12 O O2A MGT . . . C 3 -18.152 8.692 16.461 1 19.36 ? O2A MGT 1000 B 1 HETATM 13 O O5' MGT . . . C 3 -16.618 10.495 17.372 1 19.48 ? O5' MGT 1000 B 1 HETATM 14 C C5' MGT . . . C 3 -16.282 11.513 18.322 1 23.65 ? C5' MGT 1000 B 1 HETATM 15 C C4' MGT . . . C 3 -15.631 12.712 17.635 1 24.82 ? C4' MGT 1000 B 1 HETATM 16 O O4' MGT . . . C 3 -14.394 12.28 17.046 1 23.81 ? O4' MGT 1000 B 1 HETATM 17 C C3' MGT . . . C 3 -16.501 13.314 16.541 1 27.39 ? C3' MGT 1000 B 1 HETATM 18 O O3' MGT . . . C 3 -16.373 14.743 16.497 1 30.95 ? O3' MGT 1000 B 1 HETATM 19 C C2' MGT . . . C 3 -15.878 12.792 15.277 1 27.44 ? C2' MGT 1000 B 1 HETATM 20 O O2' MGT . . . C 3 -15.964 13.717 14.199 1 31.32 ? O2' MGT 1000 B 1 HETATM 21 C C1' MGT . . . C 3 -14.426 12.553 15.652 1 24.26 ? C1' MGT 1000 B 1 HETATM 22 N N9 MGT . . . C 3 -13.945 11.386 14.89 1 23.44 ? N9 MGT 1000 B 1 HETATM 23 C C8 MGT . . . C 3 -14.638 10.273 14.515 1 23.09 ? C8 MGT 1000 B 1 HETATM 24 N N7 MGT . . . C 3 -13.849 9.412 13.826 1 22.26 ? N7 MGT 1000 B 1 HETATM 25 C CM7 MGT . . . C 3 -14.283 8.105 13.265 1 23.46 ? CM7 MGT 1000 B 1 HETATM 26 C C5 MGT . . . C 3 -12.652 9.997 13.767 1 21.42 ? C5 MGT 1000 B 1 HETATM 27 C C6 MGT . . . C 3 -11.37 9.604 13.167 1 21.69 ? C6 MGT 1000 B 1 HETATM 28 O O6 MGT . . . C 3 -11.277 8.529 12.554 1 21.77 ? O6 MGT 1000 B 1 HETATM 29 N N1 MGT . . . C 3 -10.334 10.462 13.298 1 22.39 ? N1 MGT 1000 B 1 HETATM 30 C C2 MGT . . . C 3 -10.447 11.641 13.958 1 23.4 ? C2 MGT 1000 B 1 HETATM 31 N N2 MGT . . . C 3 -9.382 12.466 14.085 1 23.1 ? N2 MGT 1000 B 1 HETATM 32 N N3 MGT . . . C 3 -11.596 12.048 14.535 1 22.15 ? N3 MGT 1000 B 1 HETATM 33 C C4 MGT . . . C 3 -12.703 11.282 14.463 1 22.11 ? C4 MGT 1000 B 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 33 #