data_2JGF
#
_model_server_result.job_id            -bXSdzm-lBOWBmH5TAd3NA 
_model_server_result.datetime_utc      '2024-12-01 01:12:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2jgf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":1546}' 
#
_entry.id    2JGF 
#
_exptl.entry_id    2JGF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              150.173 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'TRIETHYLENE GLYCOL' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2JGF 
_cell.length_a            79.06 
_cell.length_b            111.73 
_cell.length_c            224.46 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2JGF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 69 A CYS 69 1_555 A SG CYS 96 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf2 A SG CYS 257 A CYS 257 1_555 A SG CYS 272 A CYS 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? 
disulf ? disulf3 A SG CYS 409 A CYS 409 1_555 A SG CYS 529 A CYS 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
disulf ? disulf4 B SG CYS 69 B CYS 69 1_555 B SG CYS 96 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf5 B SG CYS 257 B CYS 257 1_555 B SG CYS 272 B CYS 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? 
disulf ? disulf6 B SG CYS 409 B CYS 409 1_555 B SG CYS 529 B CYS 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
covale ? covale1 A C GLU 202 A GLU 202 1_555 A N SXE 203 A SXE 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? 
covale ? covale2 A C SXE 203 A SXE 203 1_555 A N ALA 204 A ALA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale3 A ND2 ASN 464 A ASN 464 1_555 C C1 NAG . A NAG 1544 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? 
covale ? covale4 B C GLU 202 B GLU 202 1_555 B N SXE 203 B SXE 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? 
covale ? covale5 B C SXE 203 B SXE 203 1_555 B N ALA 204 B ALA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
#
_chem_comp.formula           'C6 H14 O4' 
_chem_comp.formula_weight    150.173 
_chem_comp.id                PGE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'TRIETHYLENE GLYCOL' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 PGE sing 311 n n 
C1 C2 PGE sing 312 n n 
C1 H1 PGE sing 313 n n 
C1 H12 PGE sing 314 n n 
O1 HO1 PGE sing 315 n n 
C2 O2 PGE sing 316 n n 
C2 H2 PGE sing 317 n n 
C2 H22 PGE sing 318 n n 
O2 C3 PGE sing 319 n n 
C3 C4 PGE sing 320 n n 
C3 H3 PGE sing 321 n n 
C3 H32 PGE sing 322 n n 
C4 O3 PGE sing 323 n n 
C4 H4 PGE sing 324 n n 
C4 H42 PGE sing 325 n n 
O4 C6 PGE sing 326 n n 
O4 HO4 PGE sing 327 n n 
C6 C5 PGE sing 328 n n 
C6 H6 PGE sing 329 n n 
C6 H62 PGE sing 330 n n 
C5 O3 PGE sing 331 n n 
C5 H5 PGE sing 332 n n 
C5 H52 PGE sing 333 n n 
#
_atom_sites.entry_id                     2JGF 
_atom_sites.fract_transf_matrix[1][1]    0.012649 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00895 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004455 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAG A 1 1544 1544 NAG NAG . 
D 3 P6G A 1 1545 1545 P6G P6G . 
E 4 PGE A 1 1546 1546 PGE PGE . 
F 5 HOH A 1 2001 2001 HOH HOH . 
F 5 HOH A 2 2002 2002 HOH HOH . 
F 5 HOH A 3 2003 2003 HOH HOH . 
F 5 HOH A 4 2004 2004 HOH HOH . 
F 5 HOH A 5 2005 2005 HOH HOH . 
F 5 HOH A 6 2006 2006 HOH HOH . 
F 5 HOH A 7 2007 2007 HOH HOH . 
F 5 HOH A 8 2008 2008 HOH HOH . 
F 5 HOH A 9 2009 2009 HOH HOH . 
F 5 HOH A 10 2010 2010 HOH HOH . 
F 5 HOH A 11 2011 2011 HOH HOH . 
F 5 HOH A 12 2012 2012 HOH HOH . 
F 5 HOH A 13 2013 2013 HOH HOH . 
F 5 HOH A 14 2014 2014 HOH HOH . 
F 5 HOH A 15 2015 2015 HOH HOH . 
F 5 HOH A 16 2016 2016 HOH HOH . 
F 5 HOH A 17 2017 2017 HOH HOH . 
F 5 HOH A 18 2018 2018 HOH HOH . 
F 5 HOH A 19 2019 2019 HOH HOH . 
F 5 HOH A 20 2020 2020 HOH HOH . 
F 5 HOH A 21 2021 2021 HOH HOH . 
F 5 HOH A 22 2022 2022 HOH HOH . 
F 5 HOH A 23 2023 2023 HOH HOH . 
F 5 HOH A 24 2024 2024 HOH HOH . 
F 5 HOH A 25 2025 2025 HOH HOH . 
F 5 HOH A 26 2026 2026 HOH HOH . 
F 5 HOH A 27 2027 2027 HOH HOH . 
F 5 HOH A 28 2028 2028 HOH HOH . 
F 5 HOH A 29 2029 2029 HOH HOH . 
F 5 HOH A 30 2030 2030 HOH HOH . 
F 5 HOH A 31 2031 2031 HOH HOH . 
F 5 HOH A 32 2032 2032 HOH HOH . 
F 5 HOH A 33 2033 2033 HOH HOH . 
F 5 HOH A 34 2034 2034 HOH HOH . 
F 5 HOH A 35 2035 2035 HOH HOH . 
F 5 HOH A 36 2036 2036 HOH HOH . 
F 5 HOH A 37 2037 2037 HOH HOH . 
F 5 HOH A 38 2038 2038 HOH HOH . 
F 5 HOH A 39 2039 2039 HOH HOH . 
F 5 HOH A 40 2040 2040 HOH HOH . 
F 5 HOH A 41 2041 2041 HOH HOH . 
F 5 HOH A 42 2042 2042 HOH HOH . 
F 5 HOH A 43 2043 2043 HOH HOH . 
F 5 HOH A 44 2044 2044 HOH HOH . 
F 5 HOH A 45 2045 2045 HOH HOH . 
F 5 HOH A 46 2046 2046 HOH HOH . 
F 5 HOH A 47 2047 2047 HOH HOH . 
F 5 HOH A 48 2048 2048 HOH HOH . 
F 5 HOH A 49 2049 2049 HOH HOH . 
F 5 HOH A 50 2050 2050 HOH HOH . 
F 5 HOH A 51 2051 2051 HOH HOH . 
F 5 HOH A 52 2052 2052 HOH HOH . 
F 5 HOH A 53 2053 2053 HOH HOH . 
F 5 HOH A 54 2054 2054 HOH HOH . 
F 5 HOH A 55 2055 2055 HOH HOH . 
F 5 HOH A 56 2056 2056 HOH HOH . 
F 5 HOH A 57 2057 2057 HOH HOH . 
F 5 HOH A 58 2058 2058 HOH HOH . 
F 5 HOH A 59 2059 2059 HOH HOH . 
F 5 HOH A 60 2060 2060 HOH HOH . 
F 5 HOH A 61 2061 2061 HOH HOH . 
F 5 HOH A 62 2062 2062 HOH HOH . 
F 5 HOH A 63 2063 2063 HOH HOH . 
F 5 HOH A 64 2064 2064 HOH HOH . 
F 5 HOH A 65 2065 2065 HOH HOH . 
F 5 HOH A 66 2066 2066 HOH HOH . 
F 5 HOH A 67 2067 2067 HOH HOH . 
F 5 HOH A 68 2068 2068 HOH HOH . 
F 5 HOH A 69 2069 2069 HOH HOH . 
F 5 HOH A 70 2070 2070 HOH HOH . 
F 5 HOH A 71 2071 2071 HOH HOH . 
F 5 HOH A 72 2072 2072 HOH HOH . 
F 5 HOH A 73 2073 2073 HOH HOH . 
F 5 HOH A 74 2074 2074 HOH HOH . 
F 5 HOH A 75 2075 2075 HOH HOH . 
F 5 HOH A 76 2076 2076 HOH HOH . 
F 5 HOH A 77 2077 2077 HOH HOH . 
F 5 HOH A 78 2078 2078 HOH HOH . 
F 5 HOH A 79 2079 2079 HOH HOH . 
F 5 HOH A 80 2080 2080 HOH HOH . 
F 5 HOH A 81 2081 2081 HOH HOH . 
F 5 HOH A 82 2082 2082 HOH HOH . 
F 5 HOH A 83 2083 2083 HOH HOH . 
F 5 HOH A 84 2084 2084 HOH HOH . 
F 5 HOH A 85 2085 2085 HOH HOH . 
F 5 HOH A 86 2086 2086 HOH HOH . 
F 5 HOH A 87 2087 2087 HOH HOH . 
F 5 HOH A 88 2088 2088 HOH HOH . 
F 5 HOH A 89 2089 2089 HOH HOH . 
F 5 HOH A 90 2090 2090 HOH HOH . 
F 5 HOH A 91 2091 2091 HOH HOH . 
F 5 HOH A 92 2092 2092 HOH HOH . 
F 5 HOH A 93 2093 2093 HOH HOH . 
F 5 HOH A 94 2094 2094 HOH HOH . 
F 5 HOH A 95 2095 2095 HOH HOH . 
F 5 HOH A 96 2096 2096 HOH HOH . 
F 5 HOH A 97 2097 2097 HOH HOH . 
F 5 HOH A 98 2098 2098 HOH HOH . 
F 5 HOH A 99 2099 2099 HOH HOH . 
F 5 HOH A 100 2100 2100 HOH HOH . 
F 5 HOH A 101 2101 2101 HOH HOH . 
F 5 HOH A 102 2102 2102 HOH HOH . 
G 5 HOH B 1 2001 2001 HOH HOH . 
G 5 HOH B 2 2002 2002 HOH HOH . 
G 5 HOH B 3 2003 2003 HOH HOH . 
G 5 HOH B 4 2004 2004 HOH HOH . 
G 5 HOH B 5 2005 2005 HOH HOH . 
G 5 HOH B 6 2006 2006 HOH HOH . 
G 5 HOH B 7 2007 2007 HOH HOH . 
G 5 HOH B 8 2008 2008 HOH HOH . 
G 5 HOH B 9 2009 2009 HOH HOH . 
G 5 HOH B 10 2010 2010 HOH HOH . 
G 5 HOH B 11 2011 2011 HOH HOH . 
G 5 HOH B 12 2012 2012 HOH HOH . 
G 5 HOH B 13 2013 2013 HOH HOH . 
G 5 HOH B 14 2014 2014 HOH HOH . 
G 5 HOH B 15 2015 2015 HOH HOH . 
G 5 HOH B 16 2016 2016 HOH HOH . 
G 5 HOH B 17 2017 2017 HOH HOH . 
G 5 HOH B 18 2018 2018 HOH HOH . 
G 5 HOH B 19 2019 2019 HOH HOH . 
G 5 HOH B 20 2020 2020 HOH HOH . 
G 5 HOH B 21 2021 2021 HOH HOH . 
G 5 HOH B 22 2022 2022 HOH HOH . 
G 5 HOH B 23 2023 2023 HOH HOH . 
G 5 HOH B 24 2024 2024 HOH HOH . 
G 5 HOH B 25 2025 2025 HOH HOH . 
G 5 HOH B 26 2026 2026 HOH HOH . 
G 5 HOH B 27 2027 2027 HOH HOH . 
G 5 HOH B 28 2028 2028 HOH HOH . 
G 5 HOH B 29 2029 2029 HOH HOH . 
G 5 HOH B 30 2030 2030 HOH HOH . 
G 5 HOH B 31 2031 2031 HOH HOH . 
G 5 HOH B 32 2032 2032 HOH HOH . 
G 5 HOH B 33 2033 2033 HOH HOH . 
G 5 HOH B 34 2034 2034 HOH HOH . 
G 5 HOH B 35 2035 2035 HOH HOH . 
G 5 HOH B 36 2036 2036 HOH HOH . 
G 5 HOH B 37 2037 2037 HOH HOH . 
G 5 HOH B 38 2038 2038 HOH HOH . 
G 5 HOH B 39 2039 2039 HOH HOH . 
G 5 HOH B 40 2040 2040 HOH HOH . 
G 5 HOH B 41 2041 2041 HOH HOH . 
G 5 HOH B 42 2042 2042 HOH HOH . 
G 5 HOH B 43 2043 2043 HOH HOH . 
G 5 HOH B 44 2044 2044 HOH HOH . 
G 5 HOH B 45 2045 2045 HOH HOH . 
G 5 HOH B 46 2046 2046 HOH HOH . 
G 5 HOH B 47 2047 2047 HOH HOH . 
G 5 HOH B 48 2048 2048 HOH HOH . 
G 5 HOH B 49 2049 2049 HOH HOH . 
G 5 HOH B 50 2050 2050 HOH HOH . 
G 5 HOH B 51 2051 2051 HOH HOH . 
G 5 HOH B 52 2052 2052 HOH HOH . 
G 5 HOH B 53 2053 2053 HOH HOH . 
G 5 HOH B 54 2054 2054 HOH HOH . 
G 5 HOH B 55 2055 2055 HOH HOH . 
G 5 HOH B 56 2056 2056 HOH HOH . 
G 5 HOH B 57 2057 2057 HOH HOH . 
G 5 HOH B 58 2058 2058 HOH HOH . 
G 5 HOH B 59 2059 2059 HOH HOH . 
G 5 HOH B 60 2060 2060 HOH HOH . 
G 5 HOH B 61 2061 2061 HOH HOH . 
G 5 HOH B 62 2062 2062 HOH HOH . 
G 5 HOH B 63 2063 2063 HOH HOH . 
G 5 HOH B 64 2064 2064 HOH HOH . 
G 5 HOH B 65 2065 2065 HOH HOH . 
G 5 HOH B 66 2066 2066 HOH HOH . 
G 5 HOH B 67 2067 2067 HOH HOH . 
G 5 HOH B 68 2068 2068 HOH HOH . 
G 5 HOH B 69 2069 2069 HOH HOH . 
G 5 HOH B 70 2070 2070 HOH HOH . 
G 5 HOH B 71 2071 2071 HOH HOH . 
G 5 HOH B 72 2072 2072 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PGE . . . E 4 38.463 27.675 7.695 1 83.55 ? C1 PGE 1546 A 1 
HETATM 2 C C2 PGE . . . E 4 37.963 26.238 7.48 1 83.3 ? C2 PGE 1546 A 1 
HETATM 3 O O2 PGE . . . E 4 37.152 25.856 8.605 1 83.16 ? O2 PGE 1546 A 1 
HETATM 4 C C3 PGE . . . E 4 36.636 24.534 8.462 1 83.2 ? C3 PGE 1546 A 1 
HETATM 5 C C4 PGE . . . E 4 35.218 24.435 9.09 1 83.4 ? C4 PGE 1546 A 1 
HETATM 6 O O4 PGE . . . E 4 32.319 21.483 7.173 1 80.72 ? O4 PGE 1546 A 1 
HETATM 7 C C6 PGE . . . E 4 32.745 21.633 8.541 1 81.58 ? C6 PGE 1546 A 1 
HETATM 8 C C5 PGE . . . E 4 33.235 23.057 8.837 1 82.5 ? C5 PGE 1546 A 1 
HETATM 9 O O3 PGE . . . E 4 34.66 23.152 8.676 1 83.45 ? O3 PGE 1546 A 1 
#
_model_server_stats.io_time_ms              42 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           264 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           9 
#