data_2JH0 # _model_server_result.job_id -Cln1Z-zho_wLh5cKnVXSQ _model_server_result.datetime_utc '2024-12-27 00:36:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2jh0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1248}' # _entry.id 2JH0 # _exptl.entry_id 2JH0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.12 _cell.angle_gamma 90 _cell.entry_id 2JH0 _cell.length_a 70.07 _cell.length_b 71.556 _cell.length_c 71.931 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2JH0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 9 C CYS 1 1_555 B SG CYS 119 D CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf2 B SG CYS 28 D CYS 42 1_555 B SG CYS 44 D CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf3 B SG CYS 173 D CYS 168 1_555 B SG CYS 187 D CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? disulf ? disulf4 B SG CYS 201 D CYS 191 1_555 B SG CYS 231 D CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? covale ? covale1 C C GLU 8 H GLU 62 1_555 C N TYS 9 H TYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale2 C C TYS 9 H TYS 63 1_555 C N LEU 10 H LEU 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? metalc ? metalc1 B O LYS 174 D LYS 169 1_555 E CA CA . D CA 1248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? metalc ? metalc2 B O THR 177 D THR 172 1_555 E CA CA . D CA 1248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc3 B O PHE 215 D PHE 204 4_546 E CA CA . D CA 1248 1_555 A ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc4 B O ARG 233 D ARG 221 1_555 F NA NA . D NA 1249 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc5 B O LYS 236 D LYS 224 1_555 F NA NA . D NA 1249 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc6 E CA CA . D CA 1248 1_555 H O HOH . D HOH 2123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? metalc ? metalc7 E CA CA . D CA 1248 1_555 H O HOH . D HOH 2128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.56 ? metalc ? metalc8 E CA CA . D CA 1248 1_555 H O HOH . D HOH 2152 4_546 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc9 F NA NA . D NA 1249 1_555 H O HOH . D HOH 2133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? metalc ? metalc10 F NA NA . D NA 1249 1_555 H O HOH . D HOH 2136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.736 ? metalc ? metalc11 F NA NA . D NA 1249 1_555 H O HOH . D HOH 2143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc12 F NA NA . D NA 1249 1_555 H O HOH . D HOH 2164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2JH0 _atom_sites.fract_transf_matrix[1][1] 0.014271 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002547 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013975 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014122 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 701 D 1 1247 1247 701 701 . E 5 CA D 1 1248 1248 CA CA . F 6 NA D 1 1249 1249 NA NA . G 7 HOH C 1 2001 2001 HOH HOH . G 7 HOH C 2 2002 2002 HOH HOH . G 7 HOH C 3 2003 2003 HOH HOH . G 7 HOH C 4 2004 2004 HOH HOH . G 7 HOH C 5 2005 2005 HOH HOH . G 7 HOH C 6 2006 2006 HOH HOH . G 7 HOH C 7 2007 2007 HOH HOH . G 7 HOH C 8 2008 2008 HOH HOH . G 7 HOH C 9 2009 2009 HOH HOH . G 7 HOH C 10 2010 2010 HOH HOH . G 7 HOH C 11 2011 2011 HOH HOH . G 7 HOH C 12 2012 2012 HOH HOH . G 7 HOH C 13 2013 2013 HOH HOH . G 7 HOH C 14 2014 2014 HOH HOH . G 7 HOH C 15 2015 2015 HOH HOH . G 7 HOH C 16 2016 2016 HOH HOH . G 7 HOH C 17 2017 2017 HOH HOH . G 7 HOH C 18 2018 2018 HOH HOH . G 7 HOH C 19 2019 2019 HOH HOH . G 7 HOH C 20 2020 2020 HOH HOH . G 7 HOH C 21 2021 2021 HOH HOH . G 7 HOH C 22 2022 2022 HOH HOH . G 7 HOH C 23 2023 2023 HOH HOH . G 7 HOH C 24 2024 2024 HOH HOH . G 7 HOH C 25 2025 2025 HOH HOH . H 7 HOH D 1 2001 2001 HOH HOH . H 7 HOH D 2 2002 2002 HOH HOH . H 7 HOH D 3 2003 2003 HOH HOH . H 7 HOH D 4 2004 2004 HOH HOH . H 7 HOH D 5 2005 2005 HOH HOH . H 7 HOH D 6 2006 2006 HOH HOH . H 7 HOH D 7 2007 2007 HOH HOH . H 7 HOH D 8 2008 2008 HOH HOH . H 7 HOH D 9 2009 2009 HOH HOH . H 7 HOH D 10 2010 2010 HOH HOH . H 7 HOH D 11 2011 2011 HOH HOH . H 7 HOH D 12 2012 2012 HOH HOH . H 7 HOH D 13 2013 2013 HOH HOH . H 7 HOH D 14 2014 2014 HOH HOH . H 7 HOH D 15 2015 2015 HOH HOH . H 7 HOH D 16 2016 2016 HOH HOH . H 7 HOH D 17 2017 2017 HOH HOH . H 7 HOH D 18 2018 2018 HOH HOH . H 7 HOH D 19 2019 2019 HOH HOH . H 7 HOH D 20 2020 2020 HOH HOH . H 7 HOH D 21 2021 2021 HOH HOH . H 7 HOH D 22 2022 2022 HOH HOH . H 7 HOH D 23 2023 2023 HOH HOH . H 7 HOH D 24 2024 2024 HOH HOH . H 7 HOH D 25 2025 2025 HOH HOH . H 7 HOH D 26 2026 2026 HOH HOH . H 7 HOH D 27 2027 2027 HOH HOH . H 7 HOH D 28 2028 2028 HOH HOH . H 7 HOH D 29 2029 2029 HOH HOH . H 7 HOH D 30 2030 2030 HOH HOH . H 7 HOH D 31 2031 2031 HOH HOH . H 7 HOH D 32 2032 2032 HOH HOH . H 7 HOH D 33 2033 2033 HOH HOH . H 7 HOH D 34 2034 2034 HOH HOH . H 7 HOH D 35 2035 2035 HOH HOH . H 7 HOH D 36 2036 2036 HOH HOH . H 7 HOH D 37 2037 2037 HOH HOH . H 7 HOH D 38 2038 2038 HOH HOH . H 7 HOH D 39 2039 2039 HOH HOH . H 7 HOH D 40 2040 2040 HOH HOH . H 7 HOH D 41 2041 2041 HOH HOH . H 7 HOH D 42 2042 2042 HOH HOH . H 7 HOH D 43 2043 2043 HOH HOH . H 7 HOH D 44 2044 2044 HOH HOH . H 7 HOH D 45 2045 2045 HOH HOH . H 7 HOH D 46 2046 2046 HOH HOH . H 7 HOH D 47 2047 2047 HOH HOH . H 7 HOH D 48 2048 2048 HOH HOH . H 7 HOH D 49 2049 2049 HOH HOH . H 7 HOH D 50 2050 2050 HOH HOH . H 7 HOH D 51 2051 2051 HOH HOH . H 7 HOH D 52 2052 2052 HOH HOH . H 7 HOH D 53 2053 2053 HOH HOH . H 7 HOH D 54 2054 2054 HOH HOH . H 7 HOH D 55 2055 2055 HOH HOH . H 7 HOH D 56 2056 2056 HOH HOH . H 7 HOH D 57 2057 2057 HOH HOH . H 7 HOH D 58 2058 2058 HOH HOH . H 7 HOH D 59 2059 2059 HOH HOH . H 7 HOH D 60 2060 2060 HOH HOH . H 7 HOH D 61 2061 2061 HOH HOH . H 7 HOH D 62 2062 2062 HOH HOH . H 7 HOH D 63 2063 2063 HOH HOH . H 7 HOH D 64 2064 2064 HOH HOH . H 7 HOH D 65 2065 2065 HOH HOH . H 7 HOH D 66 2066 2066 HOH HOH . H 7 HOH D 67 2067 2067 HOH HOH . H 7 HOH D 68 2068 2068 HOH HOH . H 7 HOH D 69 2069 2069 HOH HOH . H 7 HOH D 70 2070 2070 HOH HOH . H 7 HOH D 71 2071 2071 HOH HOH . H 7 HOH D 72 2072 2072 HOH HOH . H 7 HOH D 73 2073 2073 HOH HOH . H 7 HOH D 74 2074 2074 HOH HOH . H 7 HOH D 75 2075 2075 HOH HOH . H 7 HOH D 76 2076 2076 HOH HOH . H 7 HOH D 77 2077 2077 HOH HOH . H 7 HOH D 78 2078 2078 HOH HOH . H 7 HOH D 79 2079 2079 HOH HOH . H 7 HOH D 80 2080 2080 HOH HOH . H 7 HOH D 81 2081 2081 HOH HOH . H 7 HOH D 82 2082 2082 HOH HOH . H 7 HOH D 83 2083 2083 HOH HOH . H 7 HOH D 84 2084 2084 HOH HOH . H 7 HOH D 85 2085 2085 HOH HOH . H 7 HOH D 86 2086 2086 HOH HOH . H 7 HOH D 87 2087 2087 HOH HOH . H 7 HOH D 88 2088 2088 HOH HOH . H 7 HOH D 89 2089 2089 HOH HOH . H 7 HOH D 90 2090 2090 HOH HOH . H 7 HOH D 91 2091 2091 HOH HOH . H 7 HOH D 92 2092 2092 HOH HOH . H 7 HOH D 93 2093 2093 HOH HOH . H 7 HOH D 94 2094 2094 HOH HOH . H 7 HOH D 95 2095 2095 HOH HOH . H 7 HOH D 96 2096 2096 HOH HOH . H 7 HOH D 97 2097 2097 HOH HOH . H 7 HOH D 98 2098 2098 HOH HOH . H 7 HOH D 99 2099 2099 HOH HOH . H 7 HOH D 100 2100 2100 HOH HOH . H 7 HOH D 101 2101 2101 HOH HOH . H 7 HOH D 102 2102 2102 HOH HOH . H 7 HOH D 103 2103 2103 HOH HOH . H 7 HOH D 104 2104 2104 HOH HOH . H 7 HOH D 105 2105 2105 HOH HOH . H 7 HOH D 106 2106 2106 HOH HOH . H 7 HOH D 107 2107 2107 HOH HOH . H 7 HOH D 108 2108 2108 HOH HOH . H 7 HOH D 109 2109 2109 HOH HOH . H 7 HOH D 110 2110 2110 HOH HOH . H 7 HOH D 111 2111 2111 HOH HOH . H 7 HOH D 112 2112 2112 HOH HOH . H 7 HOH D 113 2113 2113 HOH HOH . H 7 HOH D 114 2114 2114 HOH HOH . H 7 HOH D 115 2115 2115 HOH HOH . H 7 HOH D 116 2116 2116 HOH HOH . H 7 HOH D 117 2117 2117 HOH HOH . H 7 HOH D 118 2118 2118 HOH HOH . H 7 HOH D 119 2119 2119 HOH HOH . H 7 HOH D 120 2120 2120 HOH HOH . H 7 HOH D 121 2121 2121 HOH HOH . H 7 HOH D 122 2122 2122 HOH HOH . H 7 HOH D 123 2123 2123 HOH HOH . H 7 HOH D 124 2124 2124 HOH HOH . H 7 HOH D 125 2125 2125 HOH HOH . H 7 HOH D 126 2126 2126 HOH HOH . H 7 HOH D 127 2127 2127 HOH HOH . H 7 HOH D 128 2128 2128 HOH HOH . H 7 HOH D 129 2129 2129 HOH HOH . H 7 HOH D 130 2130 2130 HOH HOH . H 7 HOH D 131 2131 2131 HOH HOH . H 7 HOH D 132 2132 2132 HOH HOH . H 7 HOH D 133 2133 2133 HOH HOH . H 7 HOH D 134 2134 2134 HOH HOH . H 7 HOH D 135 2135 2135 HOH HOH . H 7 HOH D 136 2136 2136 HOH HOH . H 7 HOH D 137 2137 2137 HOH HOH . H 7 HOH D 138 2138 2138 HOH HOH . H 7 HOH D 139 2139 2139 HOH HOH . H 7 HOH D 140 2140 2140 HOH HOH . H 7 HOH D 141 2141 2141 HOH HOH . H 7 HOH D 142 2142 2142 HOH HOH . H 7 HOH D 143 2143 2143 HOH HOH . H 7 HOH D 144 2144 2144 HOH HOH . H 7 HOH D 145 2145 2145 HOH HOH . H 7 HOH D 146 2146 2146 HOH HOH . H 7 HOH D 147 2147 2147 HOH HOH . H 7 HOH D 148 2148 2148 HOH HOH . H 7 HOH D 149 2149 2149 HOH HOH . H 7 HOH D 150 2150 2150 HOH HOH . H 7 HOH D 151 2151 2151 HOH HOH . H 7 HOH D 152 2152 2152 HOH HOH . H 7 HOH D 153 2153 2153 HOH HOH . H 7 HOH D 154 2154 2154 HOH HOH . H 7 HOH D 155 2155 2155 HOH HOH . H 7 HOH D 156 2156 2156 HOH HOH . H 7 HOH D 157 2157 2157 HOH HOH . H 7 HOH D 158 2158 2158 HOH HOH . H 7 HOH D 159 2159 2159 HOH HOH . H 7 HOH D 160 2160 2160 HOH HOH . H 7 HOH D 161 2161 2161 HOH HOH . H 7 HOH D 162 2162 2162 HOH HOH . H 7 HOH D 163 2163 2163 HOH HOH . H 7 HOH D 164 2164 2164 HOH HOH . H 7 HOH D 165 2165 2165 HOH HOH . H 7 HOH D 166 2166 2166 HOH HOH . H 7 HOH D 167 2167 2167 HOH HOH . H 7 HOH D 168 2168 2168 HOH HOH . H 7 HOH D 169 2169 2169 HOH HOH . H 7 HOH D 170 2170 2170 HOH HOH . H 7 HOH D 171 2171 2171 HOH HOH . H 7 HOH D 172 2172 2172 HOH HOH . H 7 HOH D 173 2173 2173 HOH HOH . H 7 HOH D 174 2174 2174 HOH HOH . I 7 HOH H 1 2001 2001 HOH HOH . I 7 HOH H 2 2002 2002 HOH HOH . I 7 HOH H 3 2003 2003 HOH HOH . I 7 HOH H 4 2004 2004 HOH HOH . I 7 HOH H 5 2005 2005 HOH HOH . I 7 HOH H 6 2006 2006 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 5 _atom_site.Cartn_x 3.894 _atom_site.Cartn_y 17.363 _atom_site.Cartn_z 32.912 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 31.73 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 1248 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #