data_2JH8 # _model_server_result.job_id puLUyRj9hn3LeqQrmSvd5Q _model_server_result.datetime_utc '2024-11-22 09:54:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2jh8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1647}' # _entry.id 2JH8 # _exptl.entry_id 2JH8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 151.126 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GUANINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2JH8 _cell.length_a 75.055 _cell.length_b 75.055 _cell.length_c 419.834 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2JH8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _chem_comp.formula 'C5 H5 N5 O' _chem_comp.formula_weight 151.126 _chem_comp.id GUN _chem_comp.mon_nstd_flag . _chem_comp.name GUANINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N9 C8 GUN sing 129 n y N9 C4 GUN sing 130 n y N9 HN9 GUN sing 131 n n C8 N7 GUN doub 132 n y C8 H8 GUN sing 133 n n N7 C5 GUN sing 134 n y C5 C6 GUN sing 135 n n C5 C4 GUN doub 136 n y C6 O6 GUN doub 137 n n C6 N1 GUN sing 138 n n N1 C2 GUN sing 139 n n N1 HN1 GUN sing 140 n n C2 N2 GUN sing 141 n n C2 N3 GUN doub 142 n n N2 HN21 GUN sing 143 n n N2 HN22 GUN sing 144 n n N3 C4 GUN sing 145 n n # _atom_sites.entry_id 2JH8 _atom_sites.fract_transf_matrix[1][1] 0.013324 _atom_sites.fract_transf_matrix[1][2] 0.007692 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015385 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002382 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 M7G A 1 1645 1645 M7G M7G . C 3 GUN A 1 1646 1646 GUN GUN . D 3 GUN A 1 1647 1647 GUN GUN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N9 GUN . . . D 3 83.493 27.545 184.605 1 128.82 ? N9 GUN 1647 A 1 HETATM 2 C C8 GUN . . . D 3 82.75 26.593 185.244 1 129.13 ? C8 GUN 1647 A 1 HETATM 3 N N7 GUN . . . D 3 83.206 25.329 184.993 1 129.06 ? N7 GUN 1647 A 1 HETATM 4 C C5 GUN . . . D 3 84.264 25.444 184.178 1 128.84 ? C5 GUN 1647 A 1 HETATM 5 C C6 GUN . . . D 3 85.241 24.557 183.499 1 128.74 ? C6 GUN 1647 A 1 HETATM 6 O O6 GUN . . . D 3 85.187 23.315 183.638 1 128.75 ? O6 GUN 1647 A 1 HETATM 7 N N1 GUN . . . D 3 86.184 25.133 182.736 1 128.29 ? N1 GUN 1647 A 1 HETATM 8 C C2 GUN . . . D 3 86.275 26.459 182.567 1 128.07 ? C2 GUN 1647 A 1 HETATM 9 N N2 GUN . . . D 3 87.254 26.948 181.788 1 128.56 ? N2 GUN 1647 A 1 HETATM 10 N N3 GUN . . . D 3 85.425 27.33 183.149 1 128.34 ? N3 GUN 1647 A 1 HETATM 11 C C4 GUN . . . D 3 84.438 26.871 183.935 1 128.33 ? C4 GUN 1647 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 245 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 11 #