data_2JHP
#
_model_server_result.job_id            ooXdik_NMlv7w5kR2hzA9w 
_model_server_result.datetime_utc      '2024-12-26 18:21:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2jhp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1646}' 
#
_entry.id    2JHP 
#
_exptl.entry_id    2JHP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              384.411 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-ADENOSYL-L-HOMOCYSTEINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2JHP 
_cell.length_a            76.242 
_cell.length_b            76.242 
_cell.length_c            421.508 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2JHP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
_chem_comp.formula           'C14 H20 N6 O5 S' 
_chem_comp.formula_weight    384.411 
_chem_comp.id                SAH 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              S-ADENOSYL-L-HOMOCYSTEINE 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SAH sing 294 n n 
N HN1 SAH sing 295 n n 
N HN2 SAH sing 296 n n 
CA CB SAH sing 297 n n 
CA C SAH sing 298 n n 
CA HA SAH sing 299 n n 
CB CG SAH sing 300 n n 
CB HB1 SAH sing 301 n n 
CB HB2 SAH sing 302 n n 
CG SD SAH sing 303 n n 
CG HG1 SAH sing 304 n n 
CG HG2 SAH sing 305 n n 
SD C5' SAH sing 306 n n 
C O SAH doub 307 n n 
C OXT SAH sing 308 n n 
OXT HXT SAH sing 309 n n 
C5' C4' SAH sing 310 n n 
C5' "H5'1" SAH sing 311 n n 
C5' "H5'2" SAH sing 312 n n 
C4' O4' SAH sing 313 n n 
C4' C3' SAH sing 314 n n 
C4' H4' SAH sing 315 n n 
O4' C1' SAH sing 316 n n 
C3' O3' SAH sing 317 n n 
C3' C2' SAH sing 318 n n 
C3' H3' SAH sing 319 n n 
O3' HO3' SAH sing 320 n n 
C2' O2' SAH sing 321 n n 
C2' C1' SAH sing 322 n n 
C2' H2' SAH sing 323 n n 
O2' HO2' SAH sing 324 n n 
C1' N9 SAH sing 325 n n 
C1' H1' SAH sing 326 n n 
N9 C8 SAH sing 327 n y 
N9 C4 SAH sing 328 n y 
C8 N7 SAH doub 329 n y 
C8 H8 SAH sing 330 n n 
N7 C5 SAH sing 331 n y 
C5 C6 SAH sing 332 n y 
C5 C4 SAH doub 333 n y 
C6 N6 SAH sing 334 n n 
C6 N1 SAH doub 335 n y 
N6 HN61 SAH sing 336 n n 
N6 HN62 SAH sing 337 n n 
N1 C2 SAH sing 338 n y 
C2 N3 SAH doub 339 n y 
C2 H2 SAH sing 340 n n 
N3 C4 SAH sing 341 n y 
#
_atom_sites.entry_id                     2JHP 
_atom_sites.fract_transf_matrix[1][1]    0.013116 
_atom_sites.fract_transf_matrix[1][2]    0.007573 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015145 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002372 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SAH A 1 1645 1645 SAH SAH . 
C 2 SAH A 1 1646 1646 SAH SAH . 
D 3 GUN A 1 1647 1647 GUN GUN . 
E 3 GUN A 1 1648 1648 GUN GUN . 
F 4 HOH A 1 2001 2001 HOH HOH . 
F 4 HOH A 2 2002 2002 HOH HOH . 
F 4 HOH A 3 2003 2003 HOH HOH . 
F 4 HOH A 4 2004 2004 HOH HOH . 
F 4 HOH A 5 2005 2005 HOH HOH . 
F 4 HOH A 6 2006 2006 HOH HOH . 
F 4 HOH A 7 2007 2007 HOH HOH . 
F 4 HOH A 8 2008 2008 HOH HOH . 
F 4 HOH A 9 2009 2009 HOH HOH . 
F 4 HOH A 10 2010 2010 HOH HOH . 
F 4 HOH A 11 2011 2011 HOH HOH . 
F 4 HOH A 12 2012 2012 HOH HOH . 
F 4 HOH A 13 2013 2013 HOH HOH . 
F 4 HOH A 14 2014 2014 HOH HOH . 
F 4 HOH A 15 2015 2015 HOH HOH . 
F 4 HOH A 16 2016 2016 HOH HOH . 
F 4 HOH A 17 2017 2017 HOH HOH . 
F 4 HOH A 18 2018 2018 HOH HOH . 
F 4 HOH A 19 2019 2019 HOH HOH . 
F 4 HOH A 20 2020 2020 HOH HOH . 
F 4 HOH A 21 2021 2021 HOH HOH . 
F 4 HOH A 22 2022 2022 HOH HOH . 
F 4 HOH A 23 2023 2023 HOH HOH . 
F 4 HOH A 24 2024 2024 HOH HOH . 
F 4 HOH A 25 2025 2025 HOH HOH . 
F 4 HOH A 26 2026 2026 HOH HOH . 
F 4 HOH A 27 2027 2027 HOH HOH . 
F 4 HOH A 28 2028 2028 HOH HOH . 
F 4 HOH A 29 2029 2029 HOH HOH . 
F 4 HOH A 30 2030 2030 HOH HOH . 
F 4 HOH A 31 2031 2031 HOH HOH . 
F 4 HOH A 32 2032 2032 HOH HOH . 
F 4 HOH A 33 2033 2033 HOH HOH . 
F 4 HOH A 34 2034 2034 HOH HOH . 
F 4 HOH A 35 2035 2035 HOH HOH . 
F 4 HOH A 36 2036 2036 HOH HOH . 
F 4 HOH A 37 2037 2037 HOH HOH . 
F 4 HOH A 38 2038 2038 HOH HOH . 
F 4 HOH A 39 2039 2039 HOH HOH . 
F 4 HOH A 40 2040 2040 HOH HOH . 
F 4 HOH A 41 2041 2041 HOH HOH . 
F 4 HOH A 42 2042 2042 HOH HOH . 
F 4 HOH A 43 2043 2043 HOH HOH . 
F 4 HOH A 44 2044 2044 HOH HOH . 
F 4 HOH A 45 2045 2045 HOH HOH . 
F 4 HOH A 46 2046 2046 HOH HOH . 
F 4 HOH A 47 2047 2047 HOH HOH . 
F 4 HOH A 48 2048 2048 HOH HOH . 
F 4 HOH A 49 2049 2049 HOH HOH . 
F 4 HOH A 50 2050 2050 HOH HOH . 
F 4 HOH A 51 2051 2051 HOH HOH . 
F 4 HOH A 52 2052 2052 HOH HOH . 
F 4 HOH A 53 2053 2053 HOH HOH . 
F 4 HOH A 54 2054 2054 HOH HOH . 
F 4 HOH A 55 2055 2055 HOH HOH . 
F 4 HOH A 56 2056 2056 HOH HOH . 
F 4 HOH A 57 2057 2057 HOH HOH . 
F 4 HOH A 58 2058 2058 HOH HOH . 
F 4 HOH A 59 2059 2059 HOH HOH . 
F 4 HOH A 60 2060 2060 HOH HOH . 
F 4 HOH A 61 2061 2061 HOH HOH . 
F 4 HOH A 62 2062 2062 HOH HOH . 
F 4 HOH A 63 2063 2063 HOH HOH . 
F 4 HOH A 64 2064 2064 HOH HOH . 
F 4 HOH A 65 2065 2065 HOH HOH . 
F 4 HOH A 66 2066 2066 HOH HOH . 
F 4 HOH A 67 2067 2067 HOH HOH . 
F 4 HOH A 68 2068 2068 HOH HOH . 
F 4 HOH A 69 2069 2069 HOH HOH . 
F 4 HOH A 70 2070 2070 HOH HOH . 
F 4 HOH A 71 2071 2071 HOH HOH . 
F 4 HOH A 72 2072 2072 HOH HOH . 
F 4 HOH A 73 2073 2073 HOH HOH . 
F 4 HOH A 74 2074 2074 HOH HOH . 
F 4 HOH A 75 2075 2075 HOH HOH . 
F 4 HOH A 76 2076 2076 HOH HOH . 
F 4 HOH A 77 2077 2077 HOH HOH . 
F 4 HOH A 78 2078 2078 HOH HOH . 
F 4 HOH A 79 2079 2079 HOH HOH . 
F 4 HOH A 80 2080 2080 HOH HOH . 
F 4 HOH A 81 2081 2081 HOH HOH . 
F 4 HOH A 82 2082 2082 HOH HOH . 
F 4 HOH A 83 2083 2083 HOH HOH . 
F 4 HOH A 84 2084 2084 HOH HOH . 
F 4 HOH A 85 2085 2085 HOH HOH . 
F 4 HOH A 86 2086 2086 HOH HOH . 
F 4 HOH A 87 2087 2087 HOH HOH . 
F 4 HOH A 88 2088 2088 HOH HOH . 
F 4 HOH A 89 2089 2089 HOH HOH . 
F 4 HOH A 90 2090 2090 HOH HOH . 
F 4 HOH A 91 2091 2091 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAH . . . C 2 62.174 32.903 210.61 1 23.02 ? N SAH 1646 A 1 
HETATM 2 C CA SAH . . . C 2 62.696 33.288 211.96 1 30.27 ? CA SAH 1646 A 1 
HETATM 3 C CB SAH . . . C 2 62.635 32.131 212.961 1 5.58 ? CB SAH 1646 A 1 
HETATM 4 C CG SAH . . . C 2 61.22 31.633 213.24 1 23.71 ? CG SAH 1646 A 1 
HETATM 5 S SD SAH . . . C 2 60.702 32.042 214.92 1 38.74 ? SD SAH 1646 A 1 
HETATM 6 C C SAH . . . C 2 64.115 33.836 211.847 1 31.49 ? C SAH 1646 A 1 
HETATM 7 O O SAH . . . C 2 64.847 33.518 210.908 1 32.51 ? O SAH 1646 A 1 
HETATM 8 O OXT SAH . . . C 2 64.553 34.62 212.689 1 49.2 ? OXT SAH 1646 A 1 
HETATM 9 C C5' SAH . . . C 2 58.986 31.557 214.651 1 20.83 ? C5' SAH 1646 A 1 
HETATM 10 C C4' SAH . . . C 2 58.114 32.799 214.62 1 31.39 ? C4' SAH 1646 A 1 
HETATM 11 O O4' SAH . . . C 2 56.83 32.493 214.142 1 26.03 ? O4' SAH 1646 A 1 
HETATM 12 C C3' SAH . . . C 2 57.908 33.424 215.989 1 27.59 ? C3' SAH 1646 A 1 
HETATM 13 O O3' SAH . . . C 2 58.683 34.594 216.04 1 22.62 ? O3' SAH 1646 A 1 
HETATM 14 C C2' SAH . . . C 2 56.421 33.732 216.07 1 5.55 ? C2' SAH 1646 A 1 
HETATM 15 O O2' SAH . . . C 2 56.194 35.089 216.365 1 49.5 ? O2' SAH 1646 A 1 
HETATM 16 C C1' SAH . . . C 2 55.943 33.458 214.661 1 29.06 ? C1' SAH 1646 A 1 
HETATM 17 N N9 SAH . . . C 2 54.569 32.955 214.515 1 46.31 ? N9 SAH 1646 A 1 
HETATM 18 C C8 SAH . . . C 2 53.887 32.069 215.307 1 24.84 ? C8 SAH 1646 A 1 
HETATM 19 N N7 SAH . . . C 2 52.663 31.874 214.763 1 57.23 ? N7 SAH 1646 A 1 
HETATM 20 C C5 SAH . . . C 2 52.562 32.609 213.635 1 42.35 ? C5 SAH 1646 A 1 
HETATM 21 C C6 SAH . . . C 2 51.546 32.78 212.7 1 54.3 ? C6 SAH 1646 A 1 
HETATM 22 N N6 SAH . . . C 2 50.391 32.138 212.84 1 26.2 ? N6 SAH 1646 A 1 
HETATM 23 N N1 SAH . . . C 2 51.744 33.627 211.623 1 19.24 ? N1 SAH 1646 A 1 
HETATM 24 C C2 SAH . . . C 2 52.939 34.295 211.475 1 11.89 ? C2 SAH 1646 A 1 
HETATM 25 N N3 SAH . . . C 2 53.944 34.115 212.407 1 44.99 ? N3 SAH 1646 A 1 
HETATM 26 C C4 SAH . . . C 2 53.757 33.29 213.467 1 22.67 ? C4 SAH 1646 A 1 
#
_model_server_stats.io_time_ms              24 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           351 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           26 
#