data_2JID
#
_model_server_result.job_id            wbXAbws-CIwTUPxYqUgcSA 
_model_server_result.datetime_utc      '2024-11-21 18:09:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2jid 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":1770}' 
#
_entry.id    2JID 
#
_exptl.entry_id    2JID 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2JID 
_cell.length_a            65.251 
_cell.length_b            66.821 
_cell.length_c            423.948 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2JID 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PQS 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 298 A CYS 328 1_555 A SG CYS 309 A CYS 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? 
disulf ? disulf2 A SG CYS 355 A CYS 385 1_555 A SG CYS 364 A CYS 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? 
disulf ? disulf3 A SG CYS 414 A CYS 444 1_555 A SG CYS 417 A CYS 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
disulf ? disulf4 A SG CYS 424 A CYS 454 1_555 A SG CYS 442 A CYS 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? 
disulf ? disulf5 A SG CYS 619 A CYS 649 1_555 A SG CYS 732 A CYS 762 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? 
disulf ? disulf6 B SG CYS 298 B CYS 328 1_555 B SG CYS 309 B CYS 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? 
disulf ? disulf7 B SG CYS 355 B CYS 385 1_555 B SG CYS 364 B CYS 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? 
disulf ? disulf8 B SG CYS 414 B CYS 444 1_555 B SG CYS 417 B CYS 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf9 B SG CYS 424 B CYS 454 1_555 B SG CYS 442 B CYS 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? 
disulf ? disulf10 B SG CYS 619 B CYS 649 1_555 B SG CYS 732 B CYS 762 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? 
covale ? covale1 A ND2 ASN 199 A ASN 229 1_555 F C1 NAG . A NAG 1770 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? 
covale ? covale2 B ND2 ASN 55 B ASN 85 1_555 I C1 NAG . B NAG 1768 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? 
covale ? covale3 B ND2 ASN 62 B ASN 92 1_555 K C1 NAG . B NAG 1770 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? 
covale ? covale4 B ND2 ASN 120 B ASN 150 1_555 H C1 NAG . B NAG 1767 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 289 n n 
C1 O1 NAG sing 290 n n 
C1 O5 NAG sing 291 n n 
C1 H1 NAG sing 292 n n 
C2 C3 NAG sing 293 n n 
C2 N2 NAG sing 294 n n 
C2 H2 NAG sing 295 n n 
C3 C4 NAG sing 296 n n 
C3 O3 NAG sing 297 n n 
C3 H3 NAG sing 298 n n 
C4 C5 NAG sing 299 n n 
C4 O4 NAG sing 300 n n 
C4 H4 NAG sing 301 n n 
C5 C6 NAG sing 302 n n 
C5 O5 NAG sing 303 n n 
C5 H5 NAG sing 304 n n 
C6 O6 NAG sing 305 n n 
C6 H61 NAG sing 306 n n 
C6 H62 NAG sing 307 n n 
C7 C8 NAG sing 308 n n 
C7 N2 NAG sing 309 n n 
C7 O7 NAG doub 310 n n 
C8 H81 NAG sing 311 n n 
C8 H82 NAG sing 312 n n 
C8 H83 NAG sing 313 n n 
N2 HN2 NAG sing 314 n n 
O1 HO1 NAG sing 315 n n 
O3 HO3 NAG sing 316 n n 
O4 HO4 NAG sing 317 n n 
O6 HO6 NAG sing 318 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     2JID 
_atom_sites.fract_transf_matrix[1][1]    0.015325 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014965 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002359 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAG A 1 1767 1767 NAG NAG . 
D 2 NAG A 1 1768 1768 NAG NAG . 
E 2 NAG A 1 1769 1769 NAG NAG . 
F 2 NAG A 1 1770 1770 NAG NAG . 
G 3 GVB A 1 1771 1771 GVB GVB . 
H 2 NAG B 1 1767 1767 NAG NAG . 
I 2 NAG B 1 1768 1768 NAG NAG . 
J 2 NAG B 1 1769 1769 NAG NAG . 
K 2 NAG B 1 1770 1770 NAG NAG . 
L 3 GVB B 1 1771 1771 GVB GVB . 
M 4 HOH A 1 2001 2001 HOH HOH . 
M 4 HOH A 2 2002 2002 HOH HOH . 
M 4 HOH A 3 2003 2003 HOH HOH . 
M 4 HOH A 4 2004 2004 HOH HOH . 
M 4 HOH A 5 2005 2005 HOH HOH . 
M 4 HOH A 6 2006 2006 HOH HOH . 
M 4 HOH A 7 2007 2007 HOH HOH . 
M 4 HOH A 8 2008 2008 HOH HOH . 
M 4 HOH A 9 2009 2009 HOH HOH . 
M 4 HOH A 10 2010 2010 HOH HOH . 
M 4 HOH A 11 2011 2011 HOH HOH . 
M 4 HOH A 12 2012 2012 HOH HOH . 
M 4 HOH A 13 2013 2013 HOH HOH . 
M 4 HOH A 14 2014 2014 HOH HOH . 
M 4 HOH A 15 2015 2015 HOH HOH . 
M 4 HOH A 16 2016 2016 HOH HOH . 
M 4 HOH A 17 2017 2017 HOH HOH . 
M 4 HOH A 18 2018 2018 HOH HOH . 
M 4 HOH A 19 2019 2019 HOH HOH . 
M 4 HOH A 20 2020 2020 HOH HOH . 
M 4 HOH A 21 2021 2021 HOH HOH . 
M 4 HOH A 22 2022 2022 HOH HOH . 
M 4 HOH A 23 2023 2023 HOH HOH . 
M 4 HOH A 24 2024 2024 HOH HOH . 
M 4 HOH A 25 2025 2025 HOH HOH . 
M 4 HOH A 26 2026 2026 HOH HOH . 
M 4 HOH A 27 2027 2027 HOH HOH . 
M 4 HOH A 28 2028 2028 HOH HOH . 
M 4 HOH A 29 2029 2029 HOH HOH . 
M 4 HOH A 30 2030 2030 HOH HOH . 
M 4 HOH A 31 2031 2031 HOH HOH . 
M 4 HOH A 32 2032 2032 HOH HOH . 
M 4 HOH A 33 2033 2033 HOH HOH . 
M 4 HOH A 34 2034 2034 HOH HOH . 
M 4 HOH A 35 2035 2035 HOH HOH . 
M 4 HOH A 36 2036 2036 HOH HOH . 
M 4 HOH A 37 2037 2037 HOH HOH . 
M 4 HOH A 38 2038 2038 HOH HOH . 
M 4 HOH A 39 2039 2039 HOH HOH . 
M 4 HOH A 40 2040 2040 HOH HOH . 
M 4 HOH A 41 2041 2041 HOH HOH . 
M 4 HOH A 42 2042 2042 HOH HOH . 
M 4 HOH A 43 2043 2043 HOH HOH . 
M 4 HOH A 44 2044 2044 HOH HOH . 
M 4 HOH A 45 2045 2045 HOH HOH . 
M 4 HOH A 46 2046 2046 HOH HOH . 
M 4 HOH A 47 2047 2047 HOH HOH . 
M 4 HOH A 48 2048 2048 HOH HOH . 
M 4 HOH A 49 2049 2049 HOH HOH . 
M 4 HOH A 50 2050 2050 HOH HOH . 
M 4 HOH A 51 2051 2051 HOH HOH . 
M 4 HOH A 52 2052 2052 HOH HOH . 
M 4 HOH A 53 2053 2053 HOH HOH . 
M 4 HOH A 54 2054 2054 HOH HOH . 
M 4 HOH A 55 2055 2055 HOH HOH . 
N 4 HOH B 1 2001 2001 HOH HOH . 
N 4 HOH B 2 2002 2002 HOH HOH . 
N 4 HOH B 3 2003 2003 HOH HOH . 
N 4 HOH B 4 2004 2004 HOH HOH . 
N 4 HOH B 5 2005 2005 HOH HOH . 
N 4 HOH B 6 2006 2006 HOH HOH . 
N 4 HOH B 7 2007 2007 HOH HOH . 
N 4 HOH B 8 2008 2008 HOH HOH . 
N 4 HOH B 9 2009 2009 HOH HOH . 
N 4 HOH B 10 2010 2010 HOH HOH . 
N 4 HOH B 11 2011 2011 HOH HOH . 
N 4 HOH B 12 2012 2012 HOH HOH . 
N 4 HOH B 13 2013 2013 HOH HOH . 
N 4 HOH B 14 2014 2014 HOH HOH . 
N 4 HOH B 15 2015 2015 HOH HOH . 
N 4 HOH B 16 2016 2016 HOH HOH . 
N 4 HOH B 17 2017 2017 HOH HOH . 
N 4 HOH B 18 2018 2018 HOH HOH . 
N 4 HOH B 19 2019 2019 HOH HOH . 
N 4 HOH B 20 2020 2020 HOH HOH . 
N 4 HOH B 21 2021 2021 HOH HOH . 
N 4 HOH B 22 2022 2022 HOH HOH . 
N 4 HOH B 23 2023 2023 HOH HOH . 
N 4 HOH B 24 2024 2024 HOH HOH . 
N 4 HOH B 25 2025 2025 HOH HOH . 
N 4 HOH B 26 2026 2026 HOH HOH . 
N 4 HOH B 27 2027 2027 HOH HOH . 
N 4 HOH B 28 2028 2028 HOH HOH . 
N 4 HOH B 29 2029 2029 HOH HOH . 
N 4 HOH B 30 2030 2030 HOH HOH . 
N 4 HOH B 31 2031 2031 HOH HOH . 
N 4 HOH B 32 2032 2032 HOH HOH . 
N 4 HOH B 33 2033 2033 HOH HOH . 
N 4 HOH B 34 2034 2034 HOH HOH . 
N 4 HOH B 35 2035 2035 HOH HOH . 
N 4 HOH B 36 2036 2036 HOH HOH . 
N 4 HOH B 37 2037 2037 HOH HOH . 
N 4 HOH B 38 2038 2038 HOH HOH . 
N 4 HOH B 39 2039 2039 HOH HOH . 
N 4 HOH B 40 2040 2040 HOH HOH . 
N 4 HOH B 41 2041 2041 HOH HOH . 
N 4 HOH B 42 2042 2042 HOH HOH . 
N 4 HOH B 43 2043 2043 HOH HOH . 
N 4 HOH B 44 2044 2044 HOH HOH . 
N 4 HOH B 45 2045 2045 HOH HOH . 
N 4 HOH B 46 2046 2046 HOH HOH . 
N 4 HOH B 47 2047 2047 HOH HOH . 
N 4 HOH B 48 2048 2048 HOH HOH . 
N 4 HOH B 49 2049 2049 HOH HOH . 
N 4 HOH B 50 2050 2050 HOH HOH . 
N 4 HOH B 51 2051 2051 HOH HOH . 
N 4 HOH B 52 2052 2052 HOH HOH . 
N 4 HOH B 53 2053 2053 HOH HOH . 
N 4 HOH B 54 2054 2054 HOH HOH . 
N 4 HOH B 55 2055 2055 HOH HOH . 
N 4 HOH B 56 2056 2056 HOH HOH . 
N 4 HOH B 57 2057 2057 HOH HOH . 
N 4 HOH B 58 2058 2058 HOH HOH . 
N 4 HOH B 59 2059 2059 HOH HOH . 
N 4 HOH B 60 2060 2060 HOH HOH . 
N 4 HOH B 61 2061 2061 HOH HOH . 
N 4 HOH B 62 2062 2062 HOH HOH . 
N 4 HOH B 63 2063 2063 HOH HOH . 
N 4 HOH B 64 2064 2064 HOH HOH . 
N 4 HOH B 65 2065 2065 HOH HOH . 
N 4 HOH B 66 2066 2066 HOH HOH . 
N 4 HOH B 67 2067 2067 HOH HOH . 
N 4 HOH B 68 2068 2068 HOH HOH . 
N 4 HOH B 69 2069 2069 HOH HOH . 
N 4 HOH B 70 2070 2070 HOH HOH . 
N 4 HOH B 71 2071 2071 HOH HOH . 
N 4 HOH B 72 2072 2072 HOH HOH . 
N 4 HOH B 73 2073 2073 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . F 2 28.358 69.227 39.984 1 35.91 ? C1 NAG 1770 A 1 
HETATM 2 C C2 NAG . . . F 2 27.355 70.317 39.583 1 35.59 ? C2 NAG 1770 A 1 
HETATM 3 C C3 NAG . . . F 2 26.906 71.122 40.811 1 38.31 ? C3 NAG 1770 A 1 
HETATM 4 C C4 NAG . . . F 2 26.274 70.173 41.847 1 39.02 ? C4 NAG 1770 A 1 
HETATM 5 C C5 NAG . . . F 2 27.358 69.157 42.222 1 38.16 ? C5 NAG 1770 A 1 
HETATM 6 C C6 NAG . . . F 2 26.858 68.166 43.273 1 39.52 ? C6 NAG 1770 A 1 
HETATM 7 C C7 NAG . . . F 2 27.675 70.935 37.236 1 32.89 ? C7 NAG 1770 A 1 
HETATM 8 C C8 NAG . . . F 2 27.766 72.132 36.325 1 31.65 ? C8 NAG 1770 A 1 
HETATM 9 N N2 NAG . . . F 2 27.886 71.188 38.542 1 33.79 ? N2 NAG 1770 A 1 
HETATM 10 O O3 NAG . . . F 2 26.058 72.2 40.445 1 39.15 ? O3 NAG 1770 A 1 
HETATM 11 O O4 NAG . . . F 2 25.755 70.826 43.002 1 40.35 ? O4 NAG 1770 A 1 
HETATM 12 O O5 NAG . . . F 2 27.833 68.463 41.066 1 36.89 ? O5 NAG 1770 A 1 
HETATM 13 O O6 NAG . . . F 2 27.375 66.867 43.037 1 40.24 ? O6 NAG 1770 A 1 
HETATM 14 O O7 NAG . . . F 2 27.416 69.804 36.774 1 29.6 ? O7 NAG 1770 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    23 
_model_server_stats.query_time_ms           315 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           14 
#