data_2JID # _model_server_result.job_id hUZuOEfS1IimCfWa5GgqhQ _model_server_result.datetime_utc '2024-11-24 03:15:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2jid # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":1771}' # _entry.id 2JID # _exptl.entry_id 2JID _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 326.433 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3R,4S)-1-(3,4-DIMETHOXYPHENYL)-3-(3-METHYLPHENYL)PIPERIDIN-4-AMINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2JID _cell.length_a 65.251 _cell.length_b 66.821 _cell.length_c 423.948 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2JID _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 298 A CYS 328 1_555 A SG CYS 309 A CYS 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? disulf ? disulf2 A SG CYS 355 A CYS 385 1_555 A SG CYS 364 A CYS 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? disulf ? disulf3 A SG CYS 414 A CYS 444 1_555 A SG CYS 417 A CYS 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf4 A SG CYS 424 A CYS 454 1_555 A SG CYS 442 A CYS 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? disulf ? disulf5 A SG CYS 619 A CYS 649 1_555 A SG CYS 732 A CYS 762 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? disulf ? disulf6 B SG CYS 298 B CYS 328 1_555 B SG CYS 309 B CYS 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? disulf ? disulf7 B SG CYS 355 B CYS 385 1_555 B SG CYS 364 B CYS 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? disulf ? disulf8 B SG CYS 414 B CYS 444 1_555 B SG CYS 417 B CYS 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf9 B SG CYS 424 B CYS 454 1_555 B SG CYS 442 B CYS 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? disulf ? disulf10 B SG CYS 619 B CYS 649 1_555 B SG CYS 732 B CYS 762 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? covale ? covale1 A ND2 ASN 199 A ASN 229 1_555 F C1 NAG . A NAG 1770 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale2 B ND2 ASN 55 B ASN 85 1_555 I C1 NAG . B NAG 1768 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale3 B ND2 ASN 62 B ASN 92 1_555 K C1 NAG . B NAG 1770 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale4 B ND2 ASN 120 B ASN 150 1_555 H C1 NAG . B NAG 1767 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? # _chem_comp.formula 'C20 H26 N2 O2' _chem_comp.formula_weight 326.433 _chem_comp.id GVB _chem_comp.mon_nstd_flag . _chem_comp.name (3R,4S)-1-(3,4-DIMETHOXYPHENYL)-3-(3-METHYLPHENYL)PIPERIDIN-4-AMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C7 H7 GVB sing 129 n n C8 H8 GVB sing 130 n n C4 H4 GVB sing 131 n n C28 H281 GVB sing 132 n n C28 H282 GVB sing 133 n n C28 H283 GVB sing 134 n n C9 H9C1 GVB sing 135 n n C9 H9C2 GVB sing 136 n n C1 H1C1 GVB sing 137 n n C1 H1C2 GVB sing 138 n n C10 H10 GVB sing 139 n n C22 H221 GVB sing 140 n n C22 H222 GVB sing 141 n n C19 H19 GVB sing 142 n n N20 H201 GVB sing 143 n n N20 H202 GVB sing 144 n n C12 H12 GVB sing 145 n n C17 H17 GVB sing 146 n n C13 H13 GVB sing 147 n n C14 H14 GVB sing 148 n n C30 H301 GVB sing 149 n n C30 H302 GVB sing 150 n n C30 H303 GVB sing 151 n n C29 H293 GVB sing 152 n n C29 O26 GVB sing 153 n n O26 C6 GVB sing 154 n n C6 C7 GVB sing 155 n y C7 C8 GVB doub 156 n y C6 C5 GVB doub 157 n y C5 O25 GVB sing 158 n n O25 C28 GVB sing 159 n n C5 C4 GVB sing 160 n y C8 C3 GVB sing 161 n y C4 C3 GVB doub 162 n y C3 N2 GVB sing 163 n n N2 C9 GVB sing 164 n n N2 C1 GVB sing 165 n n C1 C22 GVB sing 166 n n C22 C19 GVB sing 167 n n C19 N20 GVB sing 168 n n C9 C10 GVB sing 169 n n C19 C10 GVB sing 170 n n C10 C11 GVB sing 171 n n C11 C12 GVB sing 172 n y C12 C13 GVB doub 173 n y C13 C14 GVB sing 174 n y C14 C16 GVB doub 175 n y C11 C17 GVB doub 176 n y C16 C17 GVB sing 177 n y C16 C30 GVB sing 178 n n C29 H291 GVB sing 179 n n C29 H292 GVB sing 180 n n # _atom_sites.entry_id 2JID _atom_sites.fract_transf_matrix[1][1] 0.015325 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014965 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002359 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAG A 1 1767 1767 NAG NAG . D 2 NAG A 1 1768 1768 NAG NAG . E 2 NAG A 1 1769 1769 NAG NAG . F 2 NAG A 1 1770 1770 NAG NAG . G 3 GVB A 1 1771 1771 GVB GVB . H 2 NAG B 1 1767 1767 NAG NAG . I 2 NAG B 1 1768 1768 NAG NAG . J 2 NAG B 1 1769 1769 NAG NAG . K 2 NAG B 1 1770 1770 NAG NAG . L 3 GVB B 1 1771 1771 GVB GVB . M 4 HOH A 1 2001 2001 HOH HOH . M 4 HOH A 2 2002 2002 HOH HOH . M 4 HOH A 3 2003 2003 HOH HOH . M 4 HOH A 4 2004 2004 HOH HOH . M 4 HOH A 5 2005 2005 HOH HOH . M 4 HOH A 6 2006 2006 HOH HOH . M 4 HOH A 7 2007 2007 HOH HOH . M 4 HOH A 8 2008 2008 HOH HOH . M 4 HOH A 9 2009 2009 HOH HOH . M 4 HOH A 10 2010 2010 HOH HOH . M 4 HOH A 11 2011 2011 HOH HOH . M 4 HOH A 12 2012 2012 HOH HOH . M 4 HOH A 13 2013 2013 HOH HOH . M 4 HOH A 14 2014 2014 HOH HOH . M 4 HOH A 15 2015 2015 HOH HOH . M 4 HOH A 16 2016 2016 HOH HOH . M 4 HOH A 17 2017 2017 HOH HOH . M 4 HOH A 18 2018 2018 HOH HOH . M 4 HOH A 19 2019 2019 HOH HOH . M 4 HOH A 20 2020 2020 HOH HOH . M 4 HOH A 21 2021 2021 HOH HOH . M 4 HOH A 22 2022 2022 HOH HOH . M 4 HOH A 23 2023 2023 HOH HOH . M 4 HOH A 24 2024 2024 HOH HOH . M 4 HOH A 25 2025 2025 HOH HOH . M 4 HOH A 26 2026 2026 HOH HOH . M 4 HOH A 27 2027 2027 HOH HOH . M 4 HOH A 28 2028 2028 HOH HOH . M 4 HOH A 29 2029 2029 HOH HOH . M 4 HOH A 30 2030 2030 HOH HOH . M 4 HOH A 31 2031 2031 HOH HOH . M 4 HOH A 32 2032 2032 HOH HOH . M 4 HOH A 33 2033 2033 HOH HOH . M 4 HOH A 34 2034 2034 HOH HOH . M 4 HOH A 35 2035 2035 HOH HOH . M 4 HOH A 36 2036 2036 HOH HOH . M 4 HOH A 37 2037 2037 HOH HOH . M 4 HOH A 38 2038 2038 HOH HOH . M 4 HOH A 39 2039 2039 HOH HOH . M 4 HOH A 40 2040 2040 HOH HOH . M 4 HOH A 41 2041 2041 HOH HOH . M 4 HOH A 42 2042 2042 HOH HOH . M 4 HOH A 43 2043 2043 HOH HOH . M 4 HOH A 44 2044 2044 HOH HOH . M 4 HOH A 45 2045 2045 HOH HOH . M 4 HOH A 46 2046 2046 HOH HOH . M 4 HOH A 47 2047 2047 HOH HOH . M 4 HOH A 48 2048 2048 HOH HOH . M 4 HOH A 49 2049 2049 HOH HOH . M 4 HOH A 50 2050 2050 HOH HOH . M 4 HOH A 51 2051 2051 HOH HOH . M 4 HOH A 52 2052 2052 HOH HOH . M 4 HOH A 53 2053 2053 HOH HOH . M 4 HOH A 54 2054 2054 HOH HOH . M 4 HOH A 55 2055 2055 HOH HOH . N 4 HOH B 1 2001 2001 HOH HOH . N 4 HOH B 2 2002 2002 HOH HOH . N 4 HOH B 3 2003 2003 HOH HOH . N 4 HOH B 4 2004 2004 HOH HOH . N 4 HOH B 5 2005 2005 HOH HOH . N 4 HOH B 6 2006 2006 HOH HOH . N 4 HOH B 7 2007 2007 HOH HOH . N 4 HOH B 8 2008 2008 HOH HOH . N 4 HOH B 9 2009 2009 HOH HOH . N 4 HOH B 10 2010 2010 HOH HOH . N 4 HOH B 11 2011 2011 HOH HOH . N 4 HOH B 12 2012 2012 HOH HOH . N 4 HOH B 13 2013 2013 HOH HOH . N 4 HOH B 14 2014 2014 HOH HOH . N 4 HOH B 15 2015 2015 HOH HOH . N 4 HOH B 16 2016 2016 HOH HOH . N 4 HOH B 17 2017 2017 HOH HOH . N 4 HOH B 18 2018 2018 HOH HOH . N 4 HOH B 19 2019 2019 HOH HOH . N 4 HOH B 20 2020 2020 HOH HOH . N 4 HOH B 21 2021 2021 HOH HOH . N 4 HOH B 22 2022 2022 HOH HOH . N 4 HOH B 23 2023 2023 HOH HOH . N 4 HOH B 24 2024 2024 HOH HOH . N 4 HOH B 25 2025 2025 HOH HOH . N 4 HOH B 26 2026 2026 HOH HOH . N 4 HOH B 27 2027 2027 HOH HOH . N 4 HOH B 28 2028 2028 HOH HOH . N 4 HOH B 29 2029 2029 HOH HOH . N 4 HOH B 30 2030 2030 HOH HOH . N 4 HOH B 31 2031 2031 HOH HOH . N 4 HOH B 32 2032 2032 HOH HOH . N 4 HOH B 33 2033 2033 HOH HOH . N 4 HOH B 34 2034 2034 HOH HOH . N 4 HOH B 35 2035 2035 HOH HOH . N 4 HOH B 36 2036 2036 HOH HOH . N 4 HOH B 37 2037 2037 HOH HOH . N 4 HOH B 38 2038 2038 HOH HOH . N 4 HOH B 39 2039 2039 HOH HOH . N 4 HOH B 40 2040 2040 HOH HOH . N 4 HOH B 41 2041 2041 HOH HOH . N 4 HOH B 42 2042 2042 HOH HOH . N 4 HOH B 43 2043 2043 HOH HOH . N 4 HOH B 44 2044 2044 HOH HOH . N 4 HOH B 45 2045 2045 HOH HOH . N 4 HOH B 46 2046 2046 HOH HOH . N 4 HOH B 47 2047 2047 HOH HOH . N 4 HOH B 48 2048 2048 HOH HOH . N 4 HOH B 49 2049 2049 HOH HOH . N 4 HOH B 50 2050 2050 HOH HOH . N 4 HOH B 51 2051 2051 HOH HOH . N 4 HOH B 52 2052 2052 HOH HOH . N 4 HOH B 53 2053 2053 HOH HOH . N 4 HOH B 54 2054 2054 HOH HOH . N 4 HOH B 55 2055 2055 HOH HOH . N 4 HOH B 56 2056 2056 HOH HOH . N 4 HOH B 57 2057 2057 HOH HOH . N 4 HOH B 58 2058 2058 HOH HOH . N 4 HOH B 59 2059 2059 HOH HOH . N 4 HOH B 60 2060 2060 HOH HOH . N 4 HOH B 61 2061 2061 HOH HOH . N 4 HOH B 62 2062 2062 HOH HOH . N 4 HOH B 63 2063 2063 HOH HOH . N 4 HOH B 64 2064 2064 HOH HOH . N 4 HOH B 65 2065 2065 HOH HOH . N 4 HOH B 66 2066 2066 HOH HOH . N 4 HOH B 67 2067 2067 HOH HOH . N 4 HOH B 68 2068 2068 HOH HOH . N 4 HOH B 69 2069 2069 HOH HOH . N 4 HOH B 70 2070 2070 HOH HOH . N 4 HOH B 71 2071 2071 HOH HOH . N 4 HOH B 72 2072 2072 HOH HOH . N 4 HOH B 73 2073 2073 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C29 GVB . . . L 3 64.223 67.745 77.642 1 47.34 ? C29 GVB 1771 B 1 HETATM 2 O O26 GVB . . . L 3 65.167 67.487 76.605 1 45.84 ? O26 GVB 1771 B 1 HETATM 3 C C6 GVB . . . L 3 65.311 68.489 75.659 1 45.26 ? C6 GVB 1771 B 1 HETATM 4 C C7 GVB . . . L 3 64.613 69.694 75.773 1 45.22 ? C7 GVB 1771 B 1 HETATM 5 C C8 GVB . . . L 3 64.78 70.679 74.804 1 44.43 ? C8 GVB 1771 B 1 HETATM 6 C C5 GVB . . . L 3 66.177 68.272 74.581 1 45.55 ? C5 GVB 1771 B 1 HETATM 7 O O25 GVB . . . L 3 66.865 67.075 74.516 1 44.74 ? O25 GVB 1771 B 1 HETATM 8 C C28 GVB . . . L 3 67.815 66.961 73.46 1 43.87 ? C28 GVB 1771 B 1 HETATM 9 C C4 GVB . . . L 3 66.341 69.249 73.601 1 45.09 ? C4 GVB 1771 B 1 HETATM 10 C C3 GVB . . . L 3 65.64 70.455 73.719 1 43.53 ? C3 GVB 1771 B 1 HETATM 11 N N2 GVB . . . L 3 65.83 71.462 72.754 1 42.78 ? N2 GVB 1771 B 1 HETATM 12 C C9 GVB . . . L 3 66.149 71.039 71.372 1 41.54 ? C9 GVB 1771 B 1 HETATM 13 C C1 GVB . . . L 3 65.011 72.688 72.87 1 39.88 ? C1 GVB 1771 B 1 HETATM 14 C C22 GVB . . . L 3 65.745 73.854 72.188 1 38.73 ? C22 GVB 1771 B 1 HETATM 15 C C19 GVB . . . L 3 66.061 73.507 70.724 1 40.84 ? C19 GVB 1771 B 1 HETATM 16 N N20 GVB . . . L 3 64.818 73.451 69.936 1 40.1 ? N20 GVB 1771 B 1 HETATM 17 C C10 GVB . . . L 3 66.854 72.185 70.618 1 40.42 ? C10 GVB 1771 B 1 HETATM 18 C C11 GVB . . . L 3 67.124 71.826 69.182 1 40.6 ? C11 GVB 1771 B 1 HETATM 19 C C12 GVB . . . L 3 68.102 72.5 68.456 1 40.01 ? C12 GVB 1771 B 1 HETATM 20 C C13 GVB . . . L 3 68.336 72.204 67.116 1 39.47 ? C13 GVB 1771 B 1 HETATM 21 C C14 GVB . . . L 3 67.568 71.234 66.484 1 39.98 ? C14 GVB 1771 B 1 HETATM 22 C C16 GVB . . . L 3 66.581 70.568 67.205 1 39.79 ? C16 GVB 1771 B 1 HETATM 23 C C17 GVB . . . L 3 66.369 70.848 68.547 1 40.36 ? C17 GVB 1771 B 1 HETATM 24 C C30 GVB . . . L 3 65.701 69.581 66.545 1 41.12 ? C30 GVB 1771 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 24 #