data_2JIV
#
_model_server_result.job_id            FRkdCieUdoh2dFTv9F_wuA 
_model_server_result.datetime_utc      '2024-12-03 10:09:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2jiv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1797}' 
#
_entry.id    2JIV 
#
_exptl.entry_id    2JIV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              559.059 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-(4-{[3-chloro-4-(pyridin-2-ylmethoxy)phenyl]amino}-3-cyano-7-ethoxyquinolin-6-yl)-4-(dimethylamino)butanamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          109.94 
_cell.angle_gamma         90 
_cell.entry_id            2JIV 
_cell.length_a            56.087 
_cell.length_b            98.989 
_cell.length_c            73.326 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2JIV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PQS monomeric 1 author_and_software_defined_assembly 1 
PQS monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,G 1 1 
B,D,E,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 103 A CYS 797 1_555 C CBT HKI . A HKI 1797 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.826 ? 
covale ? covale2 B SG CYS 103 B CYS 797 1_555 D CBT HKI . B HKI 1797 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.829 ? 
#
_chem_comp.formula           'C30 H31 Cl N6 O3' 
_chem_comp.formula_weight    559.059 
_chem_comp.id                HKI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-(4-{[3-chloro-4-(pyridin-2-ylmethoxy)phenyl]amino}-3-cyano-7-ethoxyquinolin-6-yl)-4-(dimethylamino)butanamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'Neratinib (HKI-272), bound form' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAC NBU HKI sing 150 n n 
NBU CAY HKI sing 151 n n 
NBU CAB HKI sing 152 n n 
CAY CBT HKI sing 153 n n 
CAX CBT HKI sing 154 n n 
CAX CBH HKI sing 155 n n 
CAM NAZ HKI doub 156 n y 
CAM CAK HKI sing 157 n y 
NAZ CBK HKI sing 158 n y 
NBB CBH HKI sing 159 n n 
NBB CBM HKI sing 160 n n 
CBH OAG HKI doub 161 n n 
OBE CBN HKI sing 162 n n 
OBE CAV HKI sing 163 n n 
CAK CAL HKI doub 164 n y 
CLA CBJ HKI sing 165 n n 
CBN CBJ HKI doub 166 n y 
CBN CAP HKI sing 167 n y 
CBJ CAR HKI sing 168 n y 
CAP CAO HKI doub 169 n y 
CBM CAS HKI doub 170 n y 
CBM CBO HKI sing 171 n y 
CAR CBI HKI doub 172 n y 
CBK CAV HKI sing 173 n n 
CBK CAN HKI doub 174 n y 
CAO CBI HKI sing 175 n y 
CAS CBR HKI sing 176 n y 
CBI NBC HKI sing 177 n n 
OBD CBO HKI sing 178 n n 
OBD CAU HKI sing 179 n n 
CAL CAN HKI sing 180 n y 
NBC CBP HKI sing 181 n n 
CBO CAT HKI doub 182 n y 
CAA CAU HKI sing 183 n n 
CBR CBP HKI doub 184 n y 
CBR CBQ HKI sing 185 n y 
CBP CBL HKI sing 186 n y 
CAT CBQ HKI sing 187 n y 
CBQ NBA HKI doub 188 n y 
CBL CAJ HKI sing 189 n n 
CBL CAQ HKI doub 190 n y 
CAJ NAD HKI trip 191 n n 
NBA CAQ HKI sing 192 n y 
CAL H1 HKI sing 193 n n 
CAK H2 HKI sing 194 n n 
CAO H3 HKI sing 195 n n 
CAP H4 HKI sing 196 n n 
CAN H5 HKI sing 197 n n 
CAS H6 HKI sing 198 n n 
CAT H7 HKI sing 199 n n 
CAR H8 HKI sing 200 n n 
CAM H9 HKI sing 201 n n 
CAQ H10 HKI sing 202 n n 
CAA H11 HKI sing 203 n n 
CAA H12 HKI sing 204 n n 
CAA H13 HKI sing 205 n n 
CAB H14 HKI sing 206 n n 
CAB H15 HKI sing 207 n n 
CAB H16 HKI sing 208 n n 
CAC H17 HKI sing 209 n n 
CAC H18 HKI sing 210 n n 
CAC H19 HKI sing 211 n n 
CAV H20 HKI sing 212 n n 
CAV H21 HKI sing 213 n n 
CAX H22 HKI sing 214 n n 
CAX H23 HKI sing 215 n n 
CBT H24 HKI sing 216 n n 
CBT H25 HKI sing 217 n n 
CAY H26 HKI sing 218 n n 
CAY H27 HKI sing 219 n n 
CAU H28 HKI sing 220 n n 
CAU H29 HKI sing 221 n n 
NBC H30 HKI sing 222 n n 
NBB H31 HKI sing 223 n n 
#
_atom_sites.entry_id                     2JIV 
_atom_sites.fract_transf_matrix[1][1]    0.017829 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.006468 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010102 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014507 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HKI A 1 1797 1797 HKI HKI . 
D 2 HKI B 1 1797 1797 HKI HKI . 
E 3 CL B 1 1984 1984 CL CL . 
F 3 CL B 1 1985 1985 CL CL . 
G 4 HOH A 1 2001 2001 HOH HOH . 
G 4 HOH A 2 2002 2002 HOH HOH . 
G 4 HOH A 3 2003 2003 HOH HOH . 
G 4 HOH A 4 2004 2004 HOH HOH . 
G 4 HOH A 5 2005 2005 HOH HOH . 
G 4 HOH A 6 2006 2006 HOH HOH . 
G 4 HOH A 7 2007 2007 HOH HOH . 
G 4 HOH A 8 2008 2008 HOH HOH . 
G 4 HOH A 9 2009 2009 HOH HOH . 
G 4 HOH A 10 2010 2010 HOH HOH . 
G 4 HOH A 11 2011 2011 HOH HOH . 
G 4 HOH A 12 2012 2012 HOH HOH . 
G 4 HOH A 13 2013 2013 HOH HOH . 
G 4 HOH A 14 2014 2014 HOH HOH . 
G 4 HOH A 15 2015 2015 HOH HOH . 
G 4 HOH A 16 2016 2016 HOH HOH . 
G 4 HOH A 17 2017 2017 HOH HOH . 
G 4 HOH A 18 2018 2018 HOH HOH . 
G 4 HOH A 19 2019 2019 HOH HOH . 
G 4 HOH A 20 2020 2020 HOH HOH . 
G 4 HOH A 21 2021 2021 HOH HOH . 
G 4 HOH A 22 2022 2022 HOH HOH . 
G 4 HOH A 23 2023 2023 HOH HOH . 
G 4 HOH A 24 2024 2024 HOH HOH . 
G 4 HOH A 25 2025 2025 HOH HOH . 
G 4 HOH A 26 2026 2026 HOH HOH . 
G 4 HOH A 27 2027 2027 HOH HOH . 
G 4 HOH A 28 2028 2028 HOH HOH . 
G 4 HOH A 29 2029 2029 HOH HOH . 
G 4 HOH A 30 2030 2030 HOH HOH . 
G 4 HOH A 31 2031 2031 HOH HOH . 
G 4 HOH A 32 2032 2032 HOH HOH . 
G 4 HOH A 33 2033 2033 HOH HOH . 
G 4 HOH A 34 2034 2034 HOH HOH . 
G 4 HOH A 35 2035 2035 HOH HOH . 
G 4 HOH A 36 2036 2036 HOH HOH . 
G 4 HOH A 37 2037 2037 HOH HOH . 
G 4 HOH A 38 2038 2038 HOH HOH . 
G 4 HOH A 39 2039 2039 HOH HOH . 
G 4 HOH A 40 2040 2040 HOH HOH . 
G 4 HOH A 41 2041 2041 HOH HOH . 
G 4 HOH A 42 2042 2042 HOH HOH . 
G 4 HOH A 43 2043 2043 HOH HOH . 
H 4 HOH B 1 2001 2001 HOH HOH . 
H 4 HOH B 2 2002 2002 HOH HOH . 
H 4 HOH B 3 2003 2003 HOH HOH . 
H 4 HOH B 4 2004 2004 HOH HOH . 
H 4 HOH B 5 2005 2005 HOH HOH . 
H 4 HOH B 6 2006 2006 HOH HOH . 
H 4 HOH B 7 2007 2007 HOH HOH . 
H 4 HOH B 8 2008 2008 HOH HOH . 
H 4 HOH B 9 2009 2009 HOH HOH . 
H 4 HOH B 10 2010 2010 HOH HOH . 
H 4 HOH B 11 2011 2011 HOH HOH . 
H 4 HOH B 12 2012 2012 HOH HOH . 
H 4 HOH B 13 2013 2013 HOH HOH . 
H 4 HOH B 14 2014 2014 HOH HOH . 
H 4 HOH B 15 2015 2015 HOH HOH . 
H 4 HOH B 16 2016 2016 HOH HOH . 
H 4 HOH B 17 2017 2017 HOH HOH . 
H 4 HOH B 18 2018 2018 HOH HOH . 
H 4 HOH B 19 2019 2019 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAJ HKI . . . D 2 -6.508 -4.803 -0.901 1 31.74 ? CAJ HKI 1797 B 1 
HETATM 2 C CAL HKI . . . D 2 -7.068 -10.281 0.647 1 30.17 ? CAL HKI 1797 B 1 
HETATM 3 C CAK HKI . . . D 2 -6.636 -11.346 -0.127 1 30.06 ? CAK HKI 1797 B 1 
HETATM 4 C CAO HKI . . . D 2 -7.876 -6.916 -3.311 1 30.91 ? CAO HKI 1797 B 1 
HETATM 5 C CAP HKI . . . D 2 -8.759 -7.729 -2.612 1 30.89 ? CAP HKI 1797 B 1 
HETATM 6 C CAN HKI . . . D 2 -8.223 -9.61 0.273 1 30.19 ? CAN HKI 1797 B 1 
HETATM 7 C CAS HKI . . . D 2 -6.219 -2.632 -5.226 1 31.52 ? CAS HKI 1797 B 1 
HETATM 8 C CAT HKI . . . D 2 -5.089 -0.418 -3.993 1 31.26 ? CAT HKI 1797 B 1 
HETATM 9 C CAR HKI . . . D 2 -8.536 -5.041 -1.96 1 30.6 ? CAR HKI 1797 B 1 
HETATM 10 C CAM HKI . . . D 2 -7.368 -11.71 -1.25 1 30.39 ? CAM HKI 1797 B 1 
HETATM 11 C CAQ HKI . . . D 2 -5.583 -2.555 -1.157 1 31.38 ? CAQ HKI 1797 B 1 
HETATM 12 C CBL HKI . . . D 2 -6.152 -3.688 -1.722 1 31.45 ? CBL HKI 1797 B 1 
HETATM 13 C CBR HKI . . . D 2 -6.015 -2.63 -3.853 1 31.16 ? CBR HKI 1797 B 1 
HETATM 14 C CBQ HKI . . . D 2 -5.45 -1.524 -3.234 1 31.33 ? CBQ HKI 1797 B 1 
HETATM 15 C CBI HKI . . . D 2 -7.763 -5.571 -2.985 1 30.54 ? CBI HKI 1797 B 1 
HETATM 16 C CBM HKI . . . D 2 -5.859 -1.526 -5.983 1 31.68 ? CBM HKI 1797 B 1 
HETATM 17 C CBP HKI . . . D 2 -6.373 -3.729 -3.089 1 31.12 ? CBP HKI 1797 B 1 
HETATM 18 C CBN HKI . . . D 2 -9.53 -7.199 -1.587 1 30.27 ? CBN HKI 1797 B 1 
HETATM 19 C CBO HKI . . . D 2 -5.292 -0.418 -5.368 1 31.5 ? CBO HKI 1797 B 1 
HETATM 20 C CBJ HKI . . . D 2 -9.42 -5.855 -1.26 1 30.59 ? CBJ HKI 1797 B 1 
HETATM 21 C CBK HKI . . . D 2 -8.912 -10.02 -0.861 1 30.39 ? CBK HKI 1797 B 1 
HETATM 22 C CBH HKI . . . D 2 -5.101 -1.101 -8.113 1 32.6 ? CBH HKI 1797 B 1 
HETATM 23 C CAA HKI . . . D 2 -4.679 3.045 -5.757 1 31.84 ? CAA HKI 1797 B 1 
HETATM 24 C CAB HKI . . . D 2 -6.511 -4.009 -13.003 1 34.91 ? CAB HKI 1797 B 1 
HETATM 25 C CAC HKI . . . D 2 -7.573 -2.366 -11.621 1 34.25 ? CAC HKI 1797 B 1 
HETATM 26 C CAV HKI . . . D 2 -10.186 -9.288 -1.283 1 30.02 ? CAV HKI 1797 B 1 
HETATM 27 C CAX HKI . . . D 2 -5.443 -1.174 -9.6 1 33.18 ? CAX HKI 1797 B 1 
HETATM 28 C CBT HKI . . . D 2 -4.698 -2.33 -10.269 1 33.87 ? CBT HKI 1797 B 1 
HETATM 29 C CAY HKI . . . D 2 -5.175 -2.486 -11.714 1 34.02 ? CAY HKI 1797 B 1 
HETATM 30 C CAU HKI . . . D 2 -4.33 1.643 -5.255 1 31.46 ? CAU HKI 1797 B 1 
HETATM 31 N NAD HKI . . . D 2 -6.79 -5.69 -0.247 1 31.79 ? NAD HKI 1797 B 1 
HETATM 32 N NBA HKI . . . D 2 -5.25 -1.518 -1.907 1 31.51 ? NBA HKI 1797 B 1 
HETATM 33 N NAZ HKI . . . D 2 -8.465 -11.055 -1.586 1 30.56 ? NAZ HKI 1797 B 1 
HETATM 34 N NBC HKI . . . D 2 -6.916 -4.8 -3.659 1 30.88 ? NBC HKI 1797 B 1 
HETATM 35 N NBB HKI . . . D 2 -6.056 -1.535 -7.297 1 31.95 ? NBB HKI 1797 B 1 
HETATM 36 N NBU HKI . . . D 2 -6.42 -3.268 -11.738 1 34.43 ? NBU HKI 1797 B 1 
HETATM 37 O OAG HKI . . . D 2 -4.013 -0.674 -7.732 1 32.68 ? OAG HKI 1797 B 1 
HETATM 38 O OBE HKI . . . D 2 -10.39 -7.998 -0.907 1 29.94 ? OBE HKI 1797 B 1 
HETATM 39 O OBD HKI . . . D 2 -4.938 0.665 -6.107 1 31.69 ? OBD HKI 1797 B 1 
HETATM 40 CL CLA HKI . . . D 2 -10.381 -5.196 0.018 1 31.45 ? CLA HKI 1797 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           40 
#