data_2JJ3
#
_model_server_result.job_id            RqhzIDe_5t1uSrWhFbie-g 
_model_server_result.datetime_utc      '2024-12-26 11:39:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2jj3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1501}' 
#
_entry.id    2JJ3 
#
_exptl.entry_id    2JJ3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              326.386 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (3AS,4R,9BR)-4-(4-HYDROXYPHENYL)-6-(METHOXYMETHYL)-1,2,3,3A,4,9B-HEXAHYDROCYCLOPENTA[C]CHROMEN-8-OL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2JJ3 
_cell.length_a            63.409 
_cell.length_b            63.409 
_cell.length_c            248.907 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2JJ3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        169 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 61' 
#
_pdbx_struct_assembly.method_details        PQS 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C20 H22 O4' 
_chem_comp.formula_weight    326.386 
_chem_comp.id                JJ3 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (3AS,4R,9BR)-4-(4-HYDROXYPHENYL)-6-(METHOXYMETHYL)-1,2,3,3A,4,9B-HEXAHYDROCYCLOPENTA[C]CHROMEN-8-OL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 JJ3 sing 173 n y 
C1 C16 JJ3 doub 174 n y 
C1 O27 JJ3 sing 175 n n 
C2 C3 JJ3 doub 176 n y 
C2 H2 JJ3 sing 177 n n 
C3 C4 JJ3 sing 178 n y 
C3 C24 JJ3 sing 179 n n 
C4 O5 JJ3 sing 180 n n 
C4 C15 JJ3 doub 181 n y 
O5 C6 JJ3 sing 182 n n 
C6 C8 JJ3 sing 183 n n 
C6 C17 JJ3 sing 184 n n 
C6 H6 JJ3 sing 185 n n 
C8 C10 JJ3 sing 186 n n 
C8 C13 JJ3 sing 187 n n 
C8 H8 JJ3 sing 188 n n 
C10 C11 JJ3 sing 189 n n 
C10 H101 JJ3 sing 190 n n 
C10 H102 JJ3 sing 191 n n 
C11 C12 JJ3 sing 192 n n 
C11 H111 JJ3 sing 193 n n 
C11 H112 JJ3 sing 194 n n 
C12 C13 JJ3 sing 195 n n 
C12 H121 JJ3 sing 196 n n 
C12 H122 JJ3 sing 197 n n 
C13 C15 JJ3 sing 198 n n 
C13 H13 JJ3 sing 199 n n 
C15 C16 JJ3 sing 200 n y 
C16 H16 JJ3 sing 201 n n 
C17 C18 JJ3 sing 202 n y 
C17 C23 JJ3 doub 203 n y 
C18 C19 JJ3 doub 204 n y 
C18 H18 JJ3 sing 205 n n 
C19 C20 JJ3 sing 206 n y 
C19 H19 JJ3 sing 207 n n 
C20 O21 JJ3 sing 208 n n 
C20 C22 JJ3 doub 209 n y 
O21 H21 JJ3 sing 210 n n 
C22 C23 JJ3 sing 211 n y 
C22 H22 JJ3 sing 212 n n 
C23 H23 JJ3 sing 213 n n 
C24 O25 JJ3 sing 214 n n 
C24 H241 JJ3 sing 215 n n 
C24 H242 JJ3 sing 216 n n 
O25 C26 JJ3 sing 217 n n 
C26 H261 JJ3 sing 218 n n 
C26 H262 JJ3 sing 219 n n 
C26 H263 JJ3 sing 220 n n 
O27 H27 JJ3 sing 221 n n 
#
_atom_sites.entry_id                     2JJ3 
_atom_sites.fract_transf_matrix[1][1]    0.015771 
_atom_sites.fract_transf_matrix[1][2]    0.009105 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01821 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004018 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 JJ3 A 1 1499 1499 JJ3 JJ3 . 
D 2 JJ3 B 1 1501 1501 JJ3 JJ3 . 
E 3 HOH A 1 2001 2001 HOH HOH . 
E 3 HOH A 2 2002 2002 HOH HOH . 
E 3 HOH A 3 2003 2003 HOH HOH . 
E 3 HOH A 4 2004 2004 HOH HOH . 
E 3 HOH A 5 2005 2005 HOH HOH . 
E 3 HOH A 6 2006 2006 HOH HOH . 
E 3 HOH A 7 2007 2007 HOH HOH . 
E 3 HOH A 8 2008 2008 HOH HOH . 
E 3 HOH A 9 2009 2009 HOH HOH . 
E 3 HOH A 10 2010 2010 HOH HOH . 
E 3 HOH A 11 2011 2011 HOH HOH . 
E 3 HOH A 12 2012 2012 HOH HOH . 
E 3 HOH A 13 2013 2013 HOH HOH . 
E 3 HOH A 14 2014 2014 HOH HOH . 
E 3 HOH A 15 2015 2015 HOH HOH . 
E 3 HOH A 16 2016 2016 HOH HOH . 
E 3 HOH A 17 2017 2017 HOH HOH . 
E 3 HOH A 18 2018 2018 HOH HOH . 
E 3 HOH A 19 2019 2019 HOH HOH . 
E 3 HOH A 20 2020 2020 HOH HOH . 
E 3 HOH A 21 2021 2021 HOH HOH . 
E 3 HOH A 22 2022 2022 HOH HOH . 
E 3 HOH A 23 2023 2023 HOH HOH . 
E 3 HOH A 24 2024 2024 HOH HOH . 
E 3 HOH A 25 2025 2025 HOH HOH . 
E 3 HOH A 26 2026 2026 HOH HOH . 
E 3 HOH A 27 2027 2027 HOH HOH . 
E 3 HOH A 28 2028 2028 HOH HOH . 
E 3 HOH A 29 2029 2029 HOH HOH . 
F 3 HOH B 1 2001 2001 HOH HOH . 
F 3 HOH B 2 2002 2002 HOH HOH . 
F 3 HOH B 3 2003 2003 HOH HOH . 
F 3 HOH B 4 2004 2004 HOH HOH . 
F 3 HOH B 5 2005 2005 HOH HOH . 
F 3 HOH B 6 2006 2006 HOH HOH . 
F 3 HOH B 7 2007 2007 HOH HOH . 
F 3 HOH B 8 2008 2008 HOH HOH . 
F 3 HOH B 9 2009 2009 HOH HOH . 
F 3 HOH B 10 2010 2010 HOH HOH . 
F 3 HOH B 11 2011 2011 HOH HOH . 
F 3 HOH B 12 2012 2012 HOH HOH . 
F 3 HOH B 13 2013 2013 HOH HOH . 
F 3 HOH B 14 2014 2014 HOH HOH . 
F 3 HOH B 15 2015 2015 HOH HOH . 
F 3 HOH B 16 2016 2016 HOH HOH . 
F 3 HOH B 17 2017 2017 HOH HOH . 
F 3 HOH B 18 2018 2018 HOH HOH . 
F 3 HOH B 19 2019 2019 HOH HOH . 
F 3 HOH B 20 2020 2020 HOH HOH . 
F 3 HOH B 21 2021 2021 HOH HOH . 
F 3 HOH B 22 2022 2022 HOH HOH . 
F 3 HOH B 23 2023 2023 HOH HOH . 
F 3 HOH B 24 2024 2024 HOH HOH . 
F 3 HOH B 25 2025 2025 HOH HOH . 
F 3 HOH B 26 2026 2026 HOH HOH . 
F 3 HOH B 27 2027 2027 HOH HOH . 
F 3 HOH B 28 2028 2028 HOH HOH . 
F 3 HOH B 29 2029 2029 HOH HOH . 
F 3 HOH B 30 2030 2030 HOH HOH . 
F 3 HOH B 31 2031 2031 HOH HOH . 
F 3 HOH B 32 2032 2032 HOH HOH . 
F 3 HOH B 33 2033 2033 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 JJ3 . . . D 2 92.059 35.721 48.892 1 49.2 ? C1 JJ3 1501 B 1 
HETATM 2 C C2 JJ3 . . . D 2 92.065 35.766 47.493 1 49.58 ? C2 JJ3 1501 B 1 
HETATM 3 C C3 JJ3 . . . D 2 91.834 34.591 46.77 1 49.22 ? C3 JJ3 1501 B 1 
HETATM 4 C C4 JJ3 . . . D 2 91.602 33.379 47.409 1 49.22 ? C4 JJ3 1501 B 1 
HETATM 5 O O5 JJ3 . . . D 2 91.391 32.301 46.601 1 49.68 ? O5 JJ3 1501 B 1 
HETATM 6 C C6 JJ3 . . . D 2 90.59 31.306 47.235 1 47.07 ? C6 JJ3 1501 B 1 
HETATM 7 C C8 JJ3 . . . D 2 91.238 30.826 48.546 1 45.63 ? C8 JJ3 1501 B 1 
HETATM 8 C C10 JJ3 . . . D 2 92.714 30.421 48.299 1 46.05 ? C10 JJ3 1501 B 1 
HETATM 9 C C11 JJ3 . . . D 2 93.416 30.669 49.654 1 46.48 ? C11 JJ3 1501 B 1 
HETATM 10 C C12 JJ3 . . . D 2 92.559 31.689 50.43 1 45.69 ? C12 JJ3 1501 B 1 
HETATM 11 C C13 JJ3 . . . D 2 91.326 32.024 49.538 1 46.89 ? C13 JJ3 1501 B 1 
HETATM 12 C C15 JJ3 . . . D 2 91.587 33.327 48.796 1 48.63 ? C15 JJ3 1501 B 1 
HETATM 13 C C16 JJ3 . . . D 2 91.823 34.502 49.546 1 48.02 ? C16 JJ3 1501 B 1 
HETATM 14 C C17 JJ3 . . . D 2 90.374 30.155 46.263 1 46.37 ? C17 JJ3 1501 B 1 
HETATM 15 C C18 JJ3 . . . D 2 90.638 30.342 44.906 1 44.48 ? C18 JJ3 1501 B 1 
HETATM 16 C C19 JJ3 . . . D 2 90.434 29.302 44.003 1 43.84 ? C19 JJ3 1501 B 1 
HETATM 17 C C20 JJ3 . . . D 2 89.964 28.069 44.465 1 43.84 ? C20 JJ3 1501 B 1 
HETATM 18 O O21 JJ3 . . . D 2 89.761 27.05 43.594 1 42.58 ? O21 JJ3 1501 B 1 
HETATM 19 C C22 JJ3 . . . D 2 89.701 27.876 45.824 1 43.58 ? C22 JJ3 1501 B 1 
HETATM 20 C C23 JJ3 . . . D 2 89.905 28.917 46.721 1 44.42 ? C23 JJ3 1501 B 1 
HETATM 21 C C24 JJ3 . . . D 2 91.833 34.61 45.283 1 49.09 ? C24 JJ3 1501 B 1 
HETATM 22 O O25 JJ3 . . . D 2 90.466 34.601 44.869 1 49.41 ? O25 JJ3 1501 B 1 
HETATM 23 C C26 JJ3 . . . D 2 90.383 35.487 43.781 1 50.72 ? C26 JJ3 1501 B 1 
HETATM 24 O O27 JJ3 . . . D 2 92.286 36.864 49.608 1 49.43 ? O27 JJ3 1501 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           320 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           24 
#