data_2JJX # _model_server_result.job_id Z5sEMQiWmfsAY6E7Gp0QeQ _model_server_result.datetime_utc '2024-10-19 00:49:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2jjx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1246}' # _entry.id 2JJX # _exptl.entry_id 2JJX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2JJX _cell.length_a 87.3 _cell.length_b 87.3 _cell.length_c 383.9 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2JJX _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 11_655 -x+y+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 87.3 0 191.95 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 H O HOH . A HOH 2048 1_555 G MG MG . C MG 1247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.819 ? metalc ? metalc2 F O2A ATP . C ATP 1246 1_555 G MG MG . C MG 1247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 2JJX _atom_sites.fract_transf_matrix[1][1] 0.011455 _atom_sites.fract_transf_matrix[1][2] 0.006613 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013227 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002605 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 ATP A 1 1246 1246 ATP ATP . E 2 ATP B 1 1246 1246 ATP ATP . F 2 ATP C 1 1246 1246 ATP ATP . G 3 MG C 1 1247 1247 MG MG . H 4 HOH A 1 2001 2001 HOH HOH . H 4 HOH A 2 2002 2002 HOH HOH . H 4 HOH A 3 2003 2003 HOH HOH . H 4 HOH A 4 2004 2004 HOH HOH . H 4 HOH A 5 2005 2005 HOH HOH . H 4 HOH A 6 2006 2006 HOH HOH . H 4 HOH A 7 2007 2007 HOH HOH . H 4 HOH A 8 2008 2008 HOH HOH . H 4 HOH A 9 2009 2009 HOH HOH . H 4 HOH A 10 2010 2010 HOH HOH . H 4 HOH A 11 2011 2011 HOH HOH . H 4 HOH A 12 2012 2012 HOH HOH . H 4 HOH A 13 2013 2013 HOH HOH . H 4 HOH A 14 2014 2014 HOH HOH . H 4 HOH A 15 2015 2015 HOH HOH . H 4 HOH A 16 2016 2016 HOH HOH . H 4 HOH A 17 2017 2017 HOH HOH . H 4 HOH A 18 2018 2018 HOH HOH . H 4 HOH A 19 2019 2019 HOH HOH . H 4 HOH A 20 2020 2020 HOH HOH . H 4 HOH A 21 2021 2021 HOH HOH . H 4 HOH A 22 2022 2022 HOH HOH . H 4 HOH A 23 2023 2023 HOH HOH . H 4 HOH A 24 2024 2024 HOH HOH . H 4 HOH A 25 2025 2025 HOH HOH . H 4 HOH A 26 2026 2026 HOH HOH . H 4 HOH A 27 2027 2027 HOH HOH . H 4 HOH A 28 2028 2028 HOH HOH . H 4 HOH A 29 2029 2029 HOH HOH . H 4 HOH A 30 2030 2030 HOH HOH . H 4 HOH A 31 2031 2031 HOH HOH . H 4 HOH A 32 2032 2032 HOH HOH . H 4 HOH A 33 2033 2033 HOH HOH . H 4 HOH A 34 2034 2034 HOH HOH . H 4 HOH A 35 2035 2035 HOH HOH . H 4 HOH A 36 2036 2036 HOH HOH . H 4 HOH A 37 2037 2037 HOH HOH . H 4 HOH A 38 2038 2038 HOH HOH . H 4 HOH A 39 2039 2039 HOH HOH . H 4 HOH A 40 2040 2040 HOH HOH . H 4 HOH A 41 2041 2041 HOH HOH . H 4 HOH A 42 2042 2042 HOH HOH . H 4 HOH A 43 2043 2043 HOH HOH . H 4 HOH A 44 2044 2044 HOH HOH . H 4 HOH A 45 2045 2045 HOH HOH . H 4 HOH A 46 2046 2046 HOH HOH . H 4 HOH A 47 2047 2047 HOH HOH . H 4 HOH A 48 2048 2048 HOH HOH . I 4 HOH B 1 2001 2001 HOH HOH . I 4 HOH B 2 2002 2002 HOH HOH . I 4 HOH B 3 2003 2003 HOH HOH . I 4 HOH B 4 2004 2004 HOH HOH . I 4 HOH B 5 2005 2005 HOH HOH . I 4 HOH B 6 2006 2006 HOH HOH . I 4 HOH B 7 2007 2007 HOH HOH . I 4 HOH B 8 2008 2008 HOH HOH . I 4 HOH B 9 2009 2009 HOH HOH . I 4 HOH B 10 2010 2010 HOH HOH . I 4 HOH B 11 2011 2011 HOH HOH . I 4 HOH B 12 2012 2012 HOH HOH . I 4 HOH B 13 2013 2013 HOH HOH . I 4 HOH B 14 2014 2014 HOH HOH . I 4 HOH B 15 2015 2015 HOH HOH . I 4 HOH B 16 2016 2016 HOH HOH . I 4 HOH B 17 2017 2017 HOH HOH . I 4 HOH B 18 2018 2018 HOH HOH . I 4 HOH B 19 2019 2019 HOH HOH . I 4 HOH B 20 2020 2020 HOH HOH . I 4 HOH B 21 2021 2021 HOH HOH . I 4 HOH B 22 2022 2022 HOH HOH . I 4 HOH B 23 2023 2023 HOH HOH . I 4 HOH B 24 2024 2024 HOH HOH . I 4 HOH B 25 2025 2025 HOH HOH . I 4 HOH B 26 2026 2026 HOH HOH . I 4 HOH B 27 2027 2027 HOH HOH . I 4 HOH B 28 2028 2028 HOH HOH . I 4 HOH B 29 2029 2029 HOH HOH . I 4 HOH B 30 2030 2030 HOH HOH . I 4 HOH B 31 2031 2031 HOH HOH . I 4 HOH B 32 2032 2032 HOH HOH . I 4 HOH B 33 2033 2033 HOH HOH . I 4 HOH B 34 2034 2034 HOH HOH . I 4 HOH B 35 2035 2035 HOH HOH . I 4 HOH B 36 2036 2036 HOH HOH . I 4 HOH B 37 2037 2037 HOH HOH . I 4 HOH B 38 2038 2038 HOH HOH . I 4 HOH B 39 2039 2039 HOH HOH . I 4 HOH B 40 2040 2040 HOH HOH . I 4 HOH B 41 2041 2041 HOH HOH . I 4 HOH B 42 2042 2042 HOH HOH . I 4 HOH B 43 2043 2043 HOH HOH . I 4 HOH B 44 2044 2044 HOH HOH . I 4 HOH B 45 2045 2045 HOH HOH . I 4 HOH B 46 2046 2046 HOH HOH . I 4 HOH B 47 2047 2047 HOH HOH . J 4 HOH C 1 2001 2001 HOH HOH . J 4 HOH C 2 2002 2002 HOH HOH . J 4 HOH C 3 2003 2003 HOH HOH . J 4 HOH C 4 2004 2004 HOH HOH . J 4 HOH C 5 2005 2005 HOH HOH . J 4 HOH C 6 2006 2006 HOH HOH . J 4 HOH C 7 2007 2007 HOH HOH . J 4 HOH C 8 2008 2008 HOH HOH . J 4 HOH C 9 2009 2009 HOH HOH . J 4 HOH C 10 2010 2010 HOH HOH . J 4 HOH C 11 2011 2011 HOH HOH . J 4 HOH C 12 2012 2012 HOH HOH . J 4 HOH C 13 2013 2013 HOH HOH . J 4 HOH C 14 2014 2014 HOH HOH . J 4 HOH C 15 2015 2015 HOH HOH . J 4 HOH C 16 2016 2016 HOH HOH . J 4 HOH C 17 2017 2017 HOH HOH . J 4 HOH C 18 2018 2018 HOH HOH . J 4 HOH C 19 2019 2019 HOH HOH . J 4 HOH C 20 2020 2020 HOH HOH . J 4 HOH C 21 2021 2021 HOH HOH . J 4 HOH C 22 2022 2022 HOH HOH . J 4 HOH C 23 2023 2023 HOH HOH . J 4 HOH C 24 2024 2024 HOH HOH . J 4 HOH C 25 2025 2025 HOH HOH . J 4 HOH C 26 2026 2026 HOH HOH . J 4 HOH C 27 2027 2027 HOH HOH . J 4 HOH C 28 2028 2028 HOH HOH . J 4 HOH C 29 2029 2029 HOH HOH . J 4 HOH C 30 2030 2030 HOH HOH . J 4 HOH C 31 2031 2031 HOH HOH . J 4 HOH C 32 2032 2032 HOH HOH . J 4 HOH C 33 2033 2033 HOH HOH . J 4 HOH C 34 2034 2034 HOH HOH . J 4 HOH C 35 2035 2035 HOH HOH . J 4 HOH C 36 2036 2036 HOH HOH . J 4 HOH C 37 2037 2037 HOH HOH . J 4 HOH C 38 2038 2038 HOH HOH . J 4 HOH C 39 2039 2039 HOH HOH . J 4 HOH C 40 2040 2040 HOH HOH . J 4 HOH C 41 2041 2041 HOH HOH . J 4 HOH C 42 2042 2042 HOH HOH . J 4 HOH C 43 2043 2043 HOH HOH . J 4 HOH C 44 2044 2044 HOH HOH . J 4 HOH C 45 2045 2045 HOH HOH . J 4 HOH C 46 2046 2046 HOH HOH . J 4 HOH C 47 2047 2047 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . D 2 41.787 -26.847 119.031 1 178.05 ? PG ATP 1246 A 1 HETATM 2 O O1G ATP . . . D 2 42.81 -27.432 119.997 1 177.08 ? O1G ATP 1246 A 1 HETATM 3 O O2G ATP . . . D 2 40.452 -27.405 119.482 1 176.17 ? O2G ATP 1246 A 1 HETATM 4 O O3G ATP . . . D 2 42.104 -27.305 117.613 1 175.63 ? O3G ATP 1246 A 1 HETATM 5 P PB ATP . . . D 2 41.797 -24.097 117.997 1 171.9 ? PB ATP 1246 A 1 HETATM 6 O O1B ATP . . . D 2 43.035 -23.19 118.254 1 172.47 ? O1B ATP 1246 A 1 HETATM 7 O O2B ATP . . . D 2 40.524 -23.214 118.151 1 172.25 ? O2B ATP 1246 A 1 HETATM 8 O O3B ATP . . . D 2 41.725 -25.249 119.104 1 175.19 ? O3B ATP 1246 A 1 HETATM 9 P PA ATP . . . D 2 42.814 -24.985 115.354 1 151.31 ? PA ATP 1246 A 1 HETATM 10 O O1A ATP . . . D 2 43.445 -26.393 115.521 1 152.2 ? O1A ATP 1246 A 1 HETATM 11 O O2A ATP . . . D 2 43.953 -23.938 115.299 1 150.98 ? O2A ATP 1246 A 1 HETATM 12 O O3A ATP . . . D 2 41.79 -24.73 116.537 1 167.83 ? O3A ATP 1246 A 1 HETATM 13 O O5' ATP . . . D 2 41.991 -24.903 113.949 1 147.03 ? O5' ATP 1246 A 1 HETATM 14 C C5' ATP . . . D 2 40.583 -25.182 113.959 1 139.45 ? C5' ATP 1246 A 1 HETATM 15 C C4' ATP . . . D 2 40.31 -26.284 112.936 1 137.83 ? C4' ATP 1246 A 1 HETATM 16 O O4' ATP . . . D 2 40.813 -25.918 111.617 1 136.2 ? O4' ATP 1246 A 1 HETATM 17 C C3' ATP . . . D 2 40.854 -27.671 113.293 1 137.04 ? C3' ATP 1246 A 1 HETATM 18 O O3' ATP . . . D 2 39.909 -28.472 114.007 1 138.26 ? O3' ATP 1246 A 1 HETATM 19 C C2' ATP . . . D 2 41.205 -28.298 111.941 1 136.98 ? C2' ATP 1246 A 1 HETATM 20 O O2' ATP . . . D 2 40.047 -29.048 111.52 1 137.45 ? O2' ATP 1246 A 1 HETATM 21 C C1' ATP . . . D 2 41.495 -27.084 111.038 1 134.72 ? C1' ATP 1246 A 1 HETATM 22 N N9 ATP . . . D 2 41.377 -27.309 109.586 1 131.29 ? N9 ATP 1246 A 1 HETATM 23 C C8 ATP . . . D 2 40.9 -28.443 108.965 1 130.38 ? C8 ATP 1246 A 1 HETATM 24 N N7 ATP . . . D 2 40.939 -28.38 107.653 1 130.52 ? N7 ATP 1246 A 1 HETATM 25 C C5 ATP . . . D 2 41.473 -27.133 107.41 1 128.74 ? C5 ATP 1246 A 1 HETATM 26 C C6 ATP . . . D 2 41.751 -26.488 106.203 1 127.75 ? C6 ATP 1246 A 1 HETATM 27 N N6 ATP . . . D 2 41.501 -27.109 105.004 1 126.87 ? N6 ATP 1246 A 1 HETATM 28 N N1 ATP . . . D 2 42.278 -25.231 106.245 1 127.59 ? N1 ATP 1246 A 1 HETATM 29 C C2 ATP . . . D 2 42.506 -24.645 107.446 1 127.6 ? C2 ATP 1246 A 1 HETATM 30 N N3 ATP . . . D 2 42.281 -25.185 108.668 1 128.89 ? N3 ATP 1246 A 1 HETATM 31 C C4 ATP . . . D 2 41.757 -26.436 108.58 1 129.33 ? C4 ATP 1246 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #