data_2JK7 # _model_server_result.job_id ItjrPq74nVGo4rsngsqWRQ _model_server_result.datetime_utc '2024-11-04 20:16:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2jk7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1346}' # _entry.id 2JK7 # _exptl.entry_id 2JK7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 486.605 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3S,6S,7Z,10AS)-N-(DIPHENYLMETHYL)-6-{[(2S)-2-(METHYLIDENEAMINO)BUTANOYL]AMINO}-5-OXO-1,2,3,5,6,9,10,10A-OCTAHYDROPYRROLO[1,2-A]AZOCINE-3-CARBOXAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2JK7 _cell.length_a 115.76 _cell.length_b 115.76 _cell.length_c 61.79 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2JK7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 60 A CYS 300 1_555 C ZN ZN . A ZN 1347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc2 A SG CYS 63 A CYS 303 1_555 C ZN ZN . A ZN 1347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc3 A NE2 HIS 80 A HIS 320 1_555 C ZN ZN . A ZN 1347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc4 A SG CYS 87 A CYS 327 1_555 C ZN ZN . A ZN 1347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? # _chem_comp.formula 'C29 H34 N4 O3' _chem_comp.formula_weight 486.605 _chem_comp.id BI6 _chem_comp.mon_nstd_flag . _chem_comp.name (3S,6S,7Z,10AS)-N-(DIPHENYLMETHYL)-6-{[(2S)-2-(METHYLIDENEAMINO)BUTANOYL]AMINO}-5-OXO-1,2,3,5,6,9,10,10A-OCTAHYDROPYRROLO[1,2-A]AZOCINE-3-CARBOXAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C49 C9 BI6 sing 70 n n C49 C8 BI6 sing 71 n n C9 C10 BI6 sing 72 n n C10 N3 BI6 sing 73 n n C10 C11 BI6 sing 74 n n N3 C6 BI6 sing 75 n n N3 C13 BI6 sing 76 n n C6 C5 BI6 sing 77 n n C6 O2 BI6 doub 78 n n C5 N2 BI6 sing 79 n n C5 C7 BI6 sing 80 n n N2 C4 BI6 sing 81 n n C4 C1 BI6 sing 82 n n C4 O1 BI6 doub 83 n n C1 C2 BI6 sing 84 n n C1 N1 BI6 sing 85 n n C2 C3 BI6 sing 86 n n N1 C26 BI6 doub 87 n n C7 C8 BI6 doub 88 n n C13 C14 BI6 sing 89 n n C13 C12 BI6 sing 90 n n C14 O3 BI6 doub 91 n n C14 N4 BI6 sing 92 n n N4 C15 BI6 sing 93 n n C15 C17 BI6 sing 94 n n C15 C16 BI6 sing 95 n n C17 C18 BI6 sing 96 n y C17 C22 BI6 doub 97 n y C18 C19 BI6 doub 98 n y C19 C20 BI6 sing 99 n y C20 C21 BI6 doub 100 n y C21 C22 BI6 sing 101 z y C16 C23 BI6 sing 102 n y C16 C27 BI6 doub 103 n y C23 C24 BI6 doub 104 n y C24 C25 BI6 sing 105 n y C25 C28 BI6 doub 106 n y C27 C28 BI6 sing 107 n y C12 C11 BI6 sing 108 n n C49 H491 BI6 sing 109 n n C49 H492 BI6 sing 110 n n C9 H91C BI6 sing 111 n n C9 H92C BI6 sing 112 n n C8 H8 BI6 sing 113 n n C10 H10 BI6 sing 114 n n C11 H111 BI6 sing 115 n n C11 H112 BI6 sing 116 n n C13 H13 BI6 sing 117 n n C5 H5 BI6 sing 118 n n N2 H2 BI6 sing 119 n n C7 H7 BI6 sing 120 n n C1 H1 BI6 sing 121 n n C2 H21C BI6 sing 122 n n C2 H22C BI6 sing 123 n n C3 H31C BI6 sing 124 n n C3 H32C BI6 sing 125 n n C3 H33C BI6 sing 126 n n C26 H261 BI6 sing 127 n n C26 H262 BI6 sing 128 n n C12 H121 BI6 sing 129 n n C12 H122 BI6 sing 130 n n N4 H4 BI6 sing 131 n n C15 H15 BI6 sing 132 n n C18 H18 BI6 sing 133 n n C22 H22 BI6 sing 134 n n C19 H19 BI6 sing 135 n n C20 H20 BI6 sing 136 n n C21 H21 BI6 sing 137 n n C23 H23 BI6 sing 138 n n C27 H27 BI6 sing 139 n n C24 H24 BI6 sing 140 n n C25 H25 BI6 sing 141 n n C28 H28 BI6 sing 142 n n # _atom_sites.entry_id 2JK7 _atom_sites.fract_transf_matrix[1][1] 0.008639 _atom_sites.fract_transf_matrix[1][2] 0.004987 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009975 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016184 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BI6 A 1 1346 1346 BI6 BI6 . C 3 ZN A 1 1347 1347 ZN ZN . D 4 HOH A 1 2001 2001 HOH HOH . D 4 HOH A 2 2002 2002 HOH HOH . D 4 HOH A 3 2003 2003 HOH HOH . D 4 HOH A 4 2004 2004 HOH HOH . D 4 HOH A 5 2005 2005 HOH HOH . D 4 HOH A 6 2006 2006 HOH HOH . D 4 HOH A 7 2007 2007 HOH HOH . D 4 HOH A 8 2008 2008 HOH HOH . D 4 HOH A 9 2009 2009 HOH HOH . D 4 HOH A 10 2010 2010 HOH HOH . D 4 HOH A 11 2011 2011 HOH HOH . D 4 HOH A 12 2012 2012 HOH HOH . D 4 HOH A 13 2013 2013 HOH HOH . D 4 HOH A 14 2014 2014 HOH HOH . D 4 HOH A 15 2015 2015 HOH HOH . D 4 HOH A 16 2016 2016 HOH HOH . D 4 HOH A 17 2017 2017 HOH HOH . D 4 HOH A 18 2018 2018 HOH HOH . D 4 HOH A 19 2019 2019 HOH HOH . D 4 HOH A 20 2020 2020 HOH HOH . D 4 HOH A 21 2021 2021 HOH HOH . D 4 HOH A 22 2022 2022 HOH HOH . D 4 HOH A 23 2023 2023 HOH HOH . D 4 HOH A 24 2024 2024 HOH HOH . D 4 HOH A 25 2025 2025 HOH HOH . D 4 HOH A 26 2026 2026 HOH HOH . D 4 HOH A 27 2027 2027 HOH HOH . D 4 HOH A 28 2028 2028 HOH HOH . D 4 HOH A 29 2029 2029 HOH HOH . D 4 HOH A 30 2030 2030 HOH HOH . D 4 HOH A 31 2031 2031 HOH HOH . D 4 HOH A 32 2032 2032 HOH HOH . D 4 HOH A 33 2033 2033 HOH HOH . D 4 HOH A 34 2034 2034 HOH HOH . D 4 HOH A 35 2035 2035 HOH HOH . D 4 HOH A 36 2036 2036 HOH HOH . D 4 HOH A 37 2037 2037 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C49 BI6 . . . B 2 110.817 98.784 61.803 1 38.71 ? C49 BI6 1346 A 1 HETATM 2 C C9 BI6 . . . B 2 109.717 98.193 62.813 1 37.06 ? C9 BI6 1346 A 1 HETATM 3 C C10 BI6 . . . B 2 108.409 97.361 62.307 1 37.55 ? C10 BI6 1346 A 1 HETATM 4 N N3 BI6 . . . B 2 108.143 97.074 60.793 1 36.56 ? N3 BI6 1346 A 1 HETATM 5 C C6 BI6 . . . B 2 109.001 96.384 59.879 1 36.22 ? C6 BI6 1346 A 1 HETATM 6 C C5 BI6 . . . B 2 110.418 95.754 60.172 1 38.9 ? C5 BI6 1346 A 1 HETATM 7 N N2 BI6 . . . B 2 111.013 94.831 59.255 1 40.59 ? N2 BI6 1346 A 1 HETATM 8 C C4 BI6 . . . B 2 111.648 93.76 59.856 1 41.5 ? C4 BI6 1346 A 1 HETATM 9 C C1 BI6 . . . B 2 112.287 92.724 58.986 1 42.7 ? C1 BI6 1346 A 1 HETATM 10 C C2 BI6 . . . B 2 111.438 91.406 59.043 1 43.61 ? C2 BI6 1346 A 1 HETATM 11 C C3 BI6 . . . B 2 109.996 91.573 58.49 1 42.02 ? C3 BI6 1346 A 1 HETATM 12 N N1 BI6 . . . B 2 113.66 92.547 59.49 1 45.24 ? N1 BI6 1346 A 1 HETATM 13 O O1 BI6 . . . B 2 111.719 93.593 61.106 1 39.02 ? O1 BI6 1346 A 1 HETATM 14 C C7 BI6 . . . B 2 111.401 96.741 60.529 1 39.79 ? C7 BI6 1346 A 1 HETATM 15 C C8 BI6 . . . B 2 111.314 97.974 60.681 1 38.35 ? C8 BI6 1346 A 1 HETATM 16 O O2 BI6 . . . B 2 108.639 96.232 58.668 1 33.33 ? O2 BI6 1346 A 1 HETATM 17 C C13 BI6 . . . B 2 106.859 97.586 60.232 1 39.18 ? C13 BI6 1346 A 1 HETATM 18 C C14 BI6 . . . B 2 107.008 98.957 59.545 1 40.43 ? C14 BI6 1346 A 1 HETATM 19 O O3 BI6 . . . B 2 108.129 99.461 59.512 1 45.02 ? O3 BI6 1346 A 1 HETATM 20 N N4 BI6 . . . B 2 106.258 98.577 58.402 1 37.77 ? N4 BI6 1346 A 1 HETATM 21 C C15 BI6 . . . B 2 106.063 99.679 57.387 1 35.46 ? C15 BI6 1346 A 1 HETATM 22 C C17 BI6 . . . B 2 105.296 100.995 57.933 1 36.59 ? C17 BI6 1346 A 1 HETATM 23 C C18 BI6 . . . B 2 105.546 102.318 57.289 1 35.34 ? C18 BI6 1346 A 1 HETATM 24 C C26 BI6 . . . B 2 114.839 93.299 59.398 1 47.53 ? C26 BI6 1346 A 1 HETATM 25 C C19 BI6 . . . B 2 104.857 103.501 57.774 1 35.46 ? C19 BI6 1346 A 1 HETATM 26 C C20 BI6 . . . B 2 103.927 103.423 58.876 1 35.93 ? C20 BI6 1346 A 1 HETATM 27 C C21 BI6 . . . B 2 103.666 102.142 59.519 1 37.64 ? C21 BI6 1346 A 1 HETATM 28 C C22 BI6 . . . B 2 104.342 100.935 59.053 1 37.16 ? C22 BI6 1346 A 1 HETATM 29 C C16 BI6 . . . B 2 105.257 99.102 56.184 1 32.83 ? C16 BI6 1346 A 1 HETATM 30 C C23 BI6 . . . B 2 103.993 99.627 55.633 1 32.61 ? C23 BI6 1346 A 1 HETATM 31 C C24 BI6 . . . B 2 103.364 99.005 54.521 1 33.44 ? C24 BI6 1346 A 1 HETATM 32 C C25 BI6 . . . B 2 103.97 97.852 53.924 1 34.15 ? C25 BI6 1346 A 1 HETATM 33 C C27 BI6 . . . B 2 105.833 97.945 55.564 1 32.61 ? C27 BI6 1346 A 1 HETATM 34 C C28 BI6 . . . B 2 105.21 97.316 54.445 1 34.12 ? C28 BI6 1346 A 1 HETATM 35 C C12 BI6 . . . B 2 106.087 97.236 61.433 1 38.48 ? C12 BI6 1346 A 1 HETATM 36 C C11 BI6 . . . B 2 107.065 97.903 62.565 1 37.4 ? C11 BI6 1346 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 36 #