data_2JKJ # _model_server_result.job_id bQZBaBNkB2PrsEsDV9Lxpg _model_server_result.datetime_utc '2024-11-22 01:27:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2jkj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":1140}' # _entry.id 2JKJ # _exptl.entry_id 2JKJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 15 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2JKJ _cell.length_a 119.6 _cell.length_b 119.6 _cell.length_c 57.7 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2JKJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 143 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS trimeric 3 author_and_software_defined_assembly 1 PQS trimeric 3 author_and_software_defined_assembly 2 PQS trimeric 3 author_and_software_defined_assembly 3 PQS trimeric 3 author_and_software_defined_assembly 4 PQS trimeric 3 author_and_software_defined_assembly 5 PQS trimeric 3 author_and_software_defined_assembly 6 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,G,H,I,DA 1 1,2,3 B,J,K,L,M,N,EA 2 1,4,5 C,O,P,Q,FA 3 1,6,7 D,R,S,T,U,V,GA 4 1,3,2 E,W,X,Y,HA 5 1,8,9 F,Z,AA,BA,CA,IA 6 1,10,11 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 119.6 0 0 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 59.8 103.576638 0 4 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 59.8 103.576638 0 5 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -59.8 103.576638 0 6 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 7 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 8 'crystal symmetry operation' 3_765 -x+y+2,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 179.4 103.576638 0 9 'crystal symmetry operation' 2_645 -y+1,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 179.4 -103.576638 0 10 'crystal symmetry operation' 2_755 -y+2,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 239.2 0 0 11 'crystal symmetry operation' 3_775 -x+y+2,-x+2,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 119.6 207.153277 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 H N N ? 2 J N N ? 2 K N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 R N N ? 2 S N N ? 2 T N N ? 2 W N N ? 2 X N N ? 2 Z N N ? 2 BA N N ? 2 CA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 29 A CYS 19 1_555 A SG CYS 61 A CYS 51 3_665 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 B SG CYS 29 B CYS 19 1_555 B SG CYS 61 B CYS 51 3_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf3 C SG CYS 29 C CYS 19 1_555 C SG CYS 61 C CYS 51 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 D SG CYS 29 D CYS 19 1_555 D SG CYS 61 D CYS 51 2_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf5 E SG CYS 29 E CYS 19 1_555 E SG CYS 61 E CYS 51 2_645 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf6 F SG CYS 29 F CYS 19 1_555 F SG CYS 61 F CYS 51 2_755 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 303 n n S O2 SO4 doub 304 n n S O3 SO4 sing 305 n n S O4 SO4 sing 306 n n # _atom_sites.entry_id 2JKJ _atom_sites.fract_transf_matrix[1][1] 0.008361 _atom_sites.fract_transf_matrix[1][2] 0.004827 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009655 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017331 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 SO4 A 1 1139 1139 SO4 SO4 . H 2 SO4 A 1 1140 1140 SO4 SO4 . I 3 CLM A 1 1141 1141 CLM CLM . J 2 SO4 B 1 1139 1139 SO4 SO4 . K 2 SO4 B 1 1140 1140 SO4 SO4 . L 3 CLM B 1 1141 1141 CLM CLM . M 4 TH8 B 1 1142 1142 TH8 TH8 . N 2 SO4 B 1 1143 1143 SO4 SO4 . O 2 SO4 C 1 1139 1139 SO4 SO4 . P 2 SO4 C 1 1140 1140 SO4 SO4 . Q 3 CLM C 1 1141 1141 CLM CLM . R 2 SO4 D 1 1139 1139 SO4 SO4 . S 2 SO4 D 1 1140 1140 SO4 SO4 . T 2 SO4 D 1 1141 1141 SO4 SO4 . U 3 CLM D 1 1142 1142 CLM CLM . V 4 TH8 D 1 1143 1143 TH8 TH8 . W 2 SO4 E 1 1139 1139 SO4 SO4 . X 2 SO4 E 1 1140 1140 SO4 SO4 . Y 3 CLM E 1 1141 1141 CLM CLM . Z 2 SO4 F 1 1142 1142 SO4 SO4 . AA 3 CLM F 1 1143 1143 CLM CLM . BA 2 SO4 F 1 1144 1144 SO4 SO4 . CA 2 SO4 F 1 1145 1145 SO4 SO4 . DA 5 HOH A 1 2001 2001 HOH HOH . DA 5 HOH A 2 2002 2002 HOH HOH . DA 5 HOH A 3 2003 2003 HOH HOH . DA 5 HOH A 4 2004 2004 HOH HOH . DA 5 HOH A 5 2005 2005 HOH HOH . DA 5 HOH A 6 2006 2006 HOH HOH . DA 5 HOH A 7 2007 2007 HOH HOH . DA 5 HOH A 8 2008 2008 HOH HOH . DA 5 HOH A 9 2009 2009 HOH HOH . DA 5 HOH A 10 2010 2010 HOH HOH . DA 5 HOH A 11 2011 2011 HOH HOH . DA 5 HOH A 12 2012 2012 HOH HOH . DA 5 HOH A 13 2013 2013 HOH HOH . DA 5 HOH A 14 2014 2014 HOH HOH . DA 5 HOH A 15 2015 2015 HOH HOH . DA 5 HOH A 16 2016 2016 HOH HOH . DA 5 HOH A 17 2017 2017 HOH HOH . EA 5 HOH B 1 2001 2001 HOH HOH . EA 5 HOH B 2 2002 2002 HOH HOH . EA 5 HOH B 3 2003 2003 HOH HOH . EA 5 HOH B 4 2004 2004 HOH HOH . EA 5 HOH B 5 2005 2005 HOH HOH . EA 5 HOH B 6 2006 2006 HOH HOH . EA 5 HOH B 7 2007 2007 HOH HOH . EA 5 HOH B 8 2008 2008 HOH HOH . EA 5 HOH B 9 2009 2009 HOH HOH . EA 5 HOH B 10 2010 2010 HOH HOH . EA 5 HOH B 11 2011 2011 HOH HOH . EA 5 HOH B 12 2012 2012 HOH HOH . EA 5 HOH B 13 2013 2013 HOH HOH . EA 5 HOH B 14 2014 2014 HOH HOH . EA 5 HOH B 15 2015 2015 HOH HOH . EA 5 HOH B 16 2016 2016 HOH HOH . EA 5 HOH B 17 2017 2017 HOH HOH . EA 5 HOH B 18 2018 2018 HOH HOH . EA 5 HOH B 19 2019 2019 HOH HOH . EA 5 HOH B 20 2020 2020 HOH HOH . EA 5 HOH B 21 2021 2021 HOH HOH . EA 5 HOH B 22 2022 2022 HOH HOH . EA 5 HOH B 23 2023 2023 HOH HOH . EA 5 HOH B 24 2024 2024 HOH HOH . EA 5 HOH B 25 2025 2025 HOH HOH . EA 5 HOH B 26 2026 2026 HOH HOH . EA 5 HOH B 27 2027 2027 HOH HOH . EA 5 HOH B 28 2028 2028 HOH HOH . EA 5 HOH B 29 2029 2029 HOH HOH . EA 5 HOH B 30 2030 2030 HOH HOH . EA 5 HOH B 31 2031 2031 HOH HOH . FA 5 HOH C 1 2001 2001 HOH HOH . FA 5 HOH C 2 2002 2002 HOH HOH . FA 5 HOH C 3 2003 2003 HOH HOH . FA 5 HOH C 4 2004 2004 HOH HOH . FA 5 HOH C 5 2005 2005 HOH HOH . FA 5 HOH C 6 2006 2006 HOH HOH . FA 5 HOH C 7 2007 2007 HOH HOH . FA 5 HOH C 8 2008 2008 HOH HOH . FA 5 HOH C 9 2009 2009 HOH HOH . FA 5 HOH C 10 2010 2010 HOH HOH . FA 5 HOH C 11 2011 2011 HOH HOH . FA 5 HOH C 12 2012 2012 HOH HOH . FA 5 HOH C 13 2013 2013 HOH HOH . FA 5 HOH C 14 2014 2014 HOH HOH . FA 5 HOH C 15 2015 2015 HOH HOH . FA 5 HOH C 16 2016 2016 HOH HOH . FA 5 HOH C 17 2017 2017 HOH HOH . FA 5 HOH C 18 2018 2018 HOH HOH . FA 5 HOH C 19 2019 2019 HOH HOH . FA 5 HOH C 20 2020 2020 HOH HOH . FA 5 HOH C 21 2021 2021 HOH HOH . FA 5 HOH C 22 2022 2022 HOH HOH . FA 5 HOH C 23 2023 2023 HOH HOH . FA 5 HOH C 24 2024 2024 HOH HOH . FA 5 HOH C 25 2025 2025 HOH HOH . FA 5 HOH C 26 2026 2026 HOH HOH . FA 5 HOH C 27 2027 2027 HOH HOH . GA 5 HOH D 1 2001 2001 HOH HOH . GA 5 HOH D 2 2002 2002 HOH HOH . GA 5 HOH D 3 2003 2003 HOH HOH . GA 5 HOH D 4 2004 2004 HOH HOH . GA 5 HOH D 5 2005 2005 HOH HOH . GA 5 HOH D 6 2006 2006 HOH HOH . GA 5 HOH D 7 2007 2007 HOH HOH . GA 5 HOH D 8 2008 2008 HOH HOH . GA 5 HOH D 9 2009 2009 HOH HOH . GA 5 HOH D 10 2010 2010 HOH HOH . GA 5 HOH D 11 2011 2011 HOH HOH . GA 5 HOH D 12 2012 2012 HOH HOH . GA 5 HOH D 13 2013 2013 HOH HOH . GA 5 HOH D 14 2014 2014 HOH HOH . GA 5 HOH D 15 2015 2015 HOH HOH . GA 5 HOH D 16 2016 2016 HOH HOH . GA 5 HOH D 17 2017 2017 HOH HOH . GA 5 HOH D 18 2018 2018 HOH HOH . GA 5 HOH D 19 2019 2019 HOH HOH . GA 5 HOH D 20 2020 2020 HOH HOH . GA 5 HOH D 21 2021 2021 HOH HOH . GA 5 HOH D 22 2022 2022 HOH HOH . GA 5 HOH D 23 2023 2023 HOH HOH . GA 5 HOH D 24 2024 2024 HOH HOH . GA 5 HOH D 25 2025 2025 HOH HOH . GA 5 HOH D 26 2026 2026 HOH HOH . GA 5 HOH D 27 2027 2027 HOH HOH . GA 5 HOH D 28 2028 2028 HOH HOH . HA 5 HOH E 1 2001 2001 HOH HOH . HA 5 HOH E 2 2002 2002 HOH HOH . HA 5 HOH E 3 2003 2003 HOH HOH . HA 5 HOH E 4 2004 2004 HOH HOH . HA 5 HOH E 5 2005 2005 HOH HOH . HA 5 HOH E 6 2006 2006 HOH HOH . HA 5 HOH E 7 2007 2007 HOH HOH . HA 5 HOH E 8 2008 2008 HOH HOH . HA 5 HOH E 9 2009 2009 HOH HOH . HA 5 HOH E 10 2010 2010 HOH HOH . HA 5 HOH E 11 2011 2011 HOH HOH . HA 5 HOH E 12 2012 2012 HOH HOH . HA 5 HOH E 13 2013 2013 HOH HOH . HA 5 HOH E 14 2014 2014 HOH HOH . HA 5 HOH E 15 2015 2015 HOH HOH . HA 5 HOH E 16 2016 2016 HOH HOH . HA 5 HOH E 17 2017 2017 HOH HOH . HA 5 HOH E 18 2018 2018 HOH HOH . HA 5 HOH E 19 2019 2019 HOH HOH . HA 5 HOH E 20 2020 2020 HOH HOH . HA 5 HOH E 21 2021 2021 HOH HOH . HA 5 HOH E 22 2022 2022 HOH HOH . IA 5 HOH F 1 2001 2001 HOH HOH . IA 5 HOH F 2 2002 2002 HOH HOH . IA 5 HOH F 3 2003 2003 HOH HOH . IA 5 HOH F 4 2004 2004 HOH HOH . IA 5 HOH F 5 2005 2005 HOH HOH . IA 5 HOH F 6 2006 2006 HOH HOH . IA 5 HOH F 7 2007 2007 HOH HOH . IA 5 HOH F 8 2008 2008 HOH HOH . IA 5 HOH F 9 2009 2009 HOH HOH . IA 5 HOH F 10 2010 2010 HOH HOH . IA 5 HOH F 11 2011 2011 HOH HOH . IA 5 HOH F 12 2012 2012 HOH HOH . IA 5 HOH F 13 2013 2013 HOH HOH . IA 5 HOH F 14 2014 2014 HOH HOH . IA 5 HOH F 15 2015 2015 HOH HOH . IA 5 HOH F 16 2016 2016 HOH HOH . IA 5 HOH F 17 2017 2017 HOH HOH . IA 5 HOH F 18 2018 2018 HOH HOH . IA 5 HOH F 19 2019 2019 HOH HOH . IA 5 HOH F 20 2020 2020 HOH HOH . IA 5 HOH F 21 2021 2021 HOH HOH . IA 5 HOH F 22 2022 2022 HOH HOH . IA 5 HOH F 23 2023 2023 HOH HOH . IA 5 HOH F 24 2024 2024 HOH HOH . IA 5 HOH F 25 2025 2025 HOH HOH . IA 5 HOH F 26 2026 2026 HOH HOH . IA 5 HOH F 27 2027 2027 HOH HOH . IA 5 HOH F 28 2028 2028 HOH HOH . IA 5 HOH F 29 2029 2029 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . S 2 89.629 24.702 45.952 1 54.82 ? S SO4 1140 D 1 HETATM 2 O O1 SO4 . . . S 2 89.777 24.838 44.471 1 54.87 ? O1 SO4 1140 D 1 HETATM 3 O O2 SO4 . . . S 2 89.105 23.406 46.372 1 54.83 ? O2 SO4 1140 D 1 HETATM 4 O O3 SO4 . . . S 2 91.012 24.779 46.518 1 54.81 ? O3 SO4 1140 D 1 HETATM 5 O O4 SO4 . . . S 2 88.91 25.89 46.452 1 54.84 ? O4 SO4 1140 D 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 5 #