data_2JKK # _model_server_result.job_id Hge4TPko9e7CfIQmBkYoPw _model_server_result.datetime_utc '2024-11-16 22:41:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2jkk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1686}' # _entry.id 2JKK # _exptl.entry_id 2JKK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 468.936 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-({5-CHLORO-2-[(2-METHOXY-4-MORPHOLIN-4-YLPHENYL)AMINO]PYRIMIDIN-4-YL}AMINO)-N-METHYLBENZAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.7 _cell.angle_gamma 90 _cell.entry_id 2JKK _cell.length_a 44.135 _cell.length_b 45.153 _cell.length_c 67.457 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2JKK _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 46 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 456 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 49 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 459 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.999 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C23 H25 Cl N6 O3' _chem_comp.formula_weight 468.936 _chem_comp.id BI9 _chem_comp.mon_nstd_flag . _chem_comp.name 2-({5-CHLORO-2-[(2-METHOXY-4-MORPHOLIN-4-YLPHENYL)AMINO]PYRIMIDIN-4-YL}AMINO)-N-METHYLBENZAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CBC CBE BI9 sing 70 n n CBC NBB BI9 sing 71 n n CBE OBG BI9 sing 72 n n OBG CBF BI9 sing 73 n n CBF CBD BI9 sing 74 n n CBD NBB BI9 sing 75 n n NBB CBA BI9 sing 76 n n CBA CAY BI9 sing 77 n y CBA CAX BI9 doub 78 n y CAY CAS BI9 doub 79 n y CAS OAT BI9 sing 80 n n CAS CAL BI9 sing 81 n y OAT CAU BI9 sing 82 n n CAX CAR BI9 sing 83 n y CAR CAL BI9 doub 84 n y CAL NAH BI9 sing 85 n n NAH C2 BI9 sing 86 n n C2 N3 BI9 sing 87 n y C2 N1 BI9 doub 88 n y N3 C4 BI9 doub 89 n y N1 C6 BI9 sing 90 n y C6 C5 BI9 doub 91 n y C5 CL5 BI9 sing 92 n n C5 C4 BI9 sing 93 n y C4 NAE BI9 sing 94 n n NAE CAJ BI9 sing 95 n n CAJ CAQ BI9 sing 96 n y CAJ CAP BI9 doub 97 n y CAQ CAW BI9 doub 98 n y CAW CAZ BI9 sing 99 n y CAZ CAV BI9 doub 100 n y CAV CAP BI9 sing 101 n y CAP CAO BI9 sing 102 n n CAO OAI BI9 doub 103 n n CAO NAN BI9 sing 104 n n NAN CAM BI9 sing 105 n n CBC HBC1 BI9 sing 106 n n CBC HBC2 BI9 sing 107 n n CBE HBE1 BI9 sing 108 n n CBE HBE2 BI9 sing 109 n n CBF HBF1 BI9 sing 110 n n CBF HBF2 BI9 sing 111 n n CBD HBD1 BI9 sing 112 n n CBD HBD2 BI9 sing 113 n n CAY HAY BI9 sing 114 n n CAX HAX BI9 sing 115 n n CAU HAU1 BI9 sing 116 n n CAU HAU2 BI9 sing 117 n n CAU HAU3 BI9 sing 118 n n CAR HAR BI9 sing 119 n n NAH HAH BI9 sing 120 n n C6 H6 BI9 sing 121 n n NAE HAE BI9 sing 122 n n CAQ HAQ BI9 sing 123 n n CAW HAW BI9 sing 124 n n CAZ HAZ BI9 sing 125 n n CAV HAV BI9 sing 126 n n NAN HAN BI9 sing 127 n n CAM HAM1 BI9 sing 128 n n CAM HAM2 BI9 sing 129 n n CAM HAM3 BI9 sing 130 n n # _atom_sites.entry_id 2JKK _atom_sites.fract_transf_matrix[1][1] 0.022658 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001863 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022147 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014874 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 1685 1685 SO4 SO4 . C 3 BI9 A 1 1686 1686 BI9 BI9 . D 4 HOH A 1 2001 2001 HOH HOH . D 4 HOH A 2 2002 2002 HOH HOH . D 4 HOH A 3 2003 2003 HOH HOH . D 4 HOH A 4 2004 2004 HOH HOH . D 4 HOH A 5 2005 2005 HOH HOH . D 4 HOH A 6 2006 2006 HOH HOH . D 4 HOH A 7 2007 2007 HOH HOH . D 4 HOH A 8 2008 2008 HOH HOH . D 4 HOH A 9 2009 2009 HOH HOH . D 4 HOH A 10 2010 2010 HOH HOH . D 4 HOH A 11 2011 2011 HOH HOH . D 4 HOH A 12 2012 2012 HOH HOH . D 4 HOH A 13 2013 2013 HOH HOH . D 4 HOH A 14 2014 2014 HOH HOH . D 4 HOH A 15 2015 2015 HOH HOH . D 4 HOH A 16 2016 2016 HOH HOH . D 4 HOH A 17 2017 2017 HOH HOH . D 4 HOH A 18 2018 2018 HOH HOH . D 4 HOH A 19 2019 2019 HOH HOH . D 4 HOH A 20 2020 2020 HOH HOH . D 4 HOH A 21 2021 2021 HOH HOH . D 4 HOH A 22 2022 2022 HOH HOH . D 4 HOH A 23 2023 2023 HOH HOH . D 4 HOH A 24 2024 2024 HOH HOH . D 4 HOH A 25 2025 2025 HOH HOH . D 4 HOH A 26 2026 2026 HOH HOH . D 4 HOH A 27 2027 2027 HOH HOH . D 4 HOH A 28 2028 2028 HOH HOH . D 4 HOH A 29 2029 2029 HOH HOH . D 4 HOH A 30 2030 2030 HOH HOH . D 4 HOH A 31 2031 2031 HOH HOH . D 4 HOH A 32 2032 2032 HOH HOH . D 4 HOH A 33 2033 2033 HOH HOH . D 4 HOH A 34 2034 2034 HOH HOH . D 4 HOH A 35 2035 2035 HOH HOH . D 4 HOH A 36 2036 2036 HOH HOH . D 4 HOH A 37 2037 2037 HOH HOH . D 4 HOH A 38 2038 2038 HOH HOH . D 4 HOH A 39 2039 2039 HOH HOH . D 4 HOH A 40 2040 2040 HOH HOH . D 4 HOH A 41 2041 2041 HOH HOH . D 4 HOH A 42 2042 2042 HOH HOH . D 4 HOH A 43 2043 2043 HOH HOH . D 4 HOH A 44 2044 2044 HOH HOH . D 4 HOH A 45 2045 2045 HOH HOH . D 4 HOH A 46 2046 2046 HOH HOH . D 4 HOH A 47 2047 2047 HOH HOH . D 4 HOH A 48 2048 2048 HOH HOH . D 4 HOH A 49 2049 2049 HOH HOH . D 4 HOH A 50 2050 2050 HOH HOH . D 4 HOH A 51 2051 2051 HOH HOH . D 4 HOH A 52 2052 2052 HOH HOH . D 4 HOH A 53 2053 2053 HOH HOH . D 4 HOH A 54 2054 2054 HOH HOH . D 4 HOH A 55 2055 2055 HOH HOH . D 4 HOH A 56 2056 2056 HOH HOH . D 4 HOH A 57 2057 2057 HOH HOH . D 4 HOH A 58 2058 2058 HOH HOH . D 4 HOH A 59 2059 2059 HOH HOH . D 4 HOH A 60 2060 2060 HOH HOH . D 4 HOH A 61 2061 2061 HOH HOH . D 4 HOH A 62 2062 2062 HOH HOH . D 4 HOH A 63 2063 2063 HOH HOH . D 4 HOH A 64 2064 2064 HOH HOH . D 4 HOH A 65 2065 2065 HOH HOH . D 4 HOH A 66 2066 2066 HOH HOH . D 4 HOH A 67 2067 2067 HOH HOH . D 4 HOH A 68 2068 2068 HOH HOH . D 4 HOH A 69 2069 2069 HOH HOH . D 4 HOH A 70 2070 2070 HOH HOH . D 4 HOH A 71 2071 2071 HOH HOH . D 4 HOH A 72 2072 2072 HOH HOH . D 4 HOH A 73 2073 2073 HOH HOH . D 4 HOH A 74 2074 2074 HOH HOH . D 4 HOH A 75 2075 2075 HOH HOH . D 4 HOH A 76 2076 2076 HOH HOH . D 4 HOH A 77 2077 2077 HOH HOH . D 4 HOH A 78 2078 2078 HOH HOH . D 4 HOH A 79 2079 2079 HOH HOH . D 4 HOH A 80 2080 2080 HOH HOH . D 4 HOH A 81 2081 2081 HOH HOH . D 4 HOH A 82 2082 2082 HOH HOH . D 4 HOH A 83 2083 2083 HOH HOH . D 4 HOH A 84 2084 2084 HOH HOH . D 4 HOH A 85 2085 2085 HOH HOH . D 4 HOH A 86 2086 2086 HOH HOH . D 4 HOH A 87 2087 2087 HOH HOH . D 4 HOH A 88 2088 2088 HOH HOH . D 4 HOH A 89 2089 2089 HOH HOH . D 4 HOH A 90 2090 2090 HOH HOH . D 4 HOH A 91 2091 2091 HOH HOH . D 4 HOH A 92 2092 2092 HOH HOH . D 4 HOH A 93 2093 2093 HOH HOH . D 4 HOH A 94 2094 2094 HOH HOH . D 4 HOH A 95 2095 2095 HOH HOH . D 4 HOH A 96 2096 2096 HOH HOH . D 4 HOH A 97 2097 2097 HOH HOH . D 4 HOH A 98 2098 2098 HOH HOH . D 4 HOH A 99 2099 2099 HOH HOH . D 4 HOH A 100 2100 2100 HOH HOH . D 4 HOH A 101 2101 2101 HOH HOH . D 4 HOH A 102 2102 2102 HOH HOH . D 4 HOH A 103 2103 2103 HOH HOH . D 4 HOH A 104 2104 2104 HOH HOH . D 4 HOH A 105 2105 2105 HOH HOH . D 4 HOH A 106 2106 2106 HOH HOH . D 4 HOH A 107 2107 2107 HOH HOH . D 4 HOH A 108 2108 2108 HOH HOH . D 4 HOH A 109 2109 2109 HOH HOH . D 4 HOH A 110 2110 2110 HOH HOH . D 4 HOH A 111 2111 2111 HOH HOH . D 4 HOH A 112 2112 2112 HOH HOH . D 4 HOH A 113 2113 2113 HOH HOH . D 4 HOH A 114 2114 2114 HOH HOH . D 4 HOH A 115 2115 2115 HOH HOH . D 4 HOH A 116 2116 2116 HOH HOH . D 4 HOH A 117 2117 2117 HOH HOH . D 4 HOH A 118 2118 2118 HOH HOH . D 4 HOH A 119 2119 2119 HOH HOH . D 4 HOH A 120 2120 2120 HOH HOH . D 4 HOH A 121 2121 2121 HOH HOH . D 4 HOH A 122 2122 2122 HOH HOH . D 4 HOH A 123 2123 2123 HOH HOH . D 4 HOH A 124 2124 2124 HOH HOH . D 4 HOH A 125 2125 2125 HOH HOH . D 4 HOH A 126 2126 2126 HOH HOH . D 4 HOH A 127 2127 2127 HOH HOH . D 4 HOH A 128 2128 2128 HOH HOH . D 4 HOH A 129 2129 2129 HOH HOH . D 4 HOH A 130 2130 2130 HOH HOH . D 4 HOH A 131 2131 2131 HOH HOH . D 4 HOH A 132 2132 2132 HOH HOH . D 4 HOH A 133 2133 2133 HOH HOH . D 4 HOH A 134 2134 2134 HOH HOH . D 4 HOH A 135 2135 2135 HOH HOH . D 4 HOH A 136 2136 2136 HOH HOH . D 4 HOH A 137 2137 2137 HOH HOH . D 4 HOH A 138 2138 2138 HOH HOH . D 4 HOH A 139 2139 2139 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CBC BI9 . . . C 3 9.041 -2.719 32.049 1 27.64 ? CBC BI9 1686 A 1 HETATM 2 C CBE BI9 . . . C 3 10.213 -2.961 33.022 1 28.37 ? CBE BI9 1686 A 1 HETATM 3 O OBG BI9 . . . C 3 11.304 -3.569 32.339 1 28.23 ? OBG BI9 1686 A 1 HETATM 4 C CBF BI9 . . . C 3 11.866 -2.667 31.39 1 27.59 ? CBF BI9 1686 A 1 HETATM 5 C CBD BI9 . . . C 3 10.867 -2.228 30.314 1 25.14 ? CBD BI9 1686 A 1 HETATM 6 N NBB BI9 . . . C 3 9.479 -2.048 30.804 1 22.32 ? NBB BI9 1686 A 1 HETATM 7 C CBA BI9 . . . C 3 8.574 -1.203 30.072 1 20.47 ? CBA BI9 1686 A 1 HETATM 8 C CAY BI9 . . . C 3 7.279 -0.935 30.531 1 18.94 ? CAY BI9 1686 A 1 HETATM 9 C CAS BI9 . . . C 3 6.397 -0.113 29.8 1 20.44 ? CAS BI9 1686 A 1 HETATM 10 O OAT BI9 . . . C 3 5.128 0.166 30.202 1 18.42 ? OAT BI9 1686 A 1 HETATM 11 C CAU BI9 . . . C 3 4.79 -0.56 31.394 1 20.67 ? CAU BI9 1686 A 1 HETATM 12 C CAX BI9 . . . C 3 8.997 -0.606 28.874 1 17.39 ? CAX BI9 1686 A 1 HETATM 13 C CAR BI9 . . . C 3 8.116 0.204 28.147 1 18.28 ? CAR BI9 1686 A 1 HETATM 14 C CAL BI9 . . . C 3 6.814 0.468 28.608 1 18.22 ? CAL BI9 1686 A 1 HETATM 15 N NAH BI9 . . . C 3 5.923 1.244 27.965 1 18.72 ? NAH BI9 1686 A 1 HETATM 16 C C2 BI9 . . . C 3 6.201 2.377 27.292 1 17.61 ? C2 BI9 1686 A 1 HETATM 17 N N3 BI9 . . . C 3 7.454 2.824 27.134 1 18.51 ? N3 BI9 1686 A 1 HETATM 18 N N1 BI9 . . . C 3 5.199 3.067 26.755 1 16.9 ? N1 BI9 1686 A 1 HETATM 19 C C6 BI9 . . . C 3 5.427 4.184 26.074 1 16.74 ? C6 BI9 1686 A 1 HETATM 20 C C5 BI9 . . . C 3 6.711 4.662 25.879 1 17.83 ? C5 BI9 1686 A 1 HETATM 21 CL CL5 BI9 . . . C 3 6.978 6.121 24.963 1 20.3 ? CL5 BI9 1686 A 1 HETATM 22 C C4 BI9 . . . C 3 7.772 3.931 26.416 1 18.56 ? C4 BI9 1686 A 1 HETATM 23 N NAE BI9 . . . C 3 9.049 4.341 26.229 1 16.74 ? NAE BI9 1686 A 1 HETATM 24 C CAJ BI9 . . . C 3 10.186 3.7 26.59 1 21.6 ? CAJ BI9 1686 A 1 HETATM 25 C CAQ BI9 . . . C 3 10.377 3.348 27.943 1 19.37 ? CAQ BI9 1686 A 1 HETATM 26 C CAW BI9 . . . C 3 11.518 2.695 28.373 1 21.3 ? CAW BI9 1686 A 1 HETATM 27 C CAZ BI9 . . . C 3 12.533 2.417 27.457 1 22.64 ? CAZ BI9 1686 A 1 HETATM 28 C CAV BI9 . . . C 3 12.37 2.774 26.12 1 23.23 ? CAV BI9 1686 A 1 HETATM 29 C CAP BI9 . . . C 3 11.21 3.405 25.674 1 20.25 ? CAP BI9 1686 A 1 HETATM 30 C CAO BI9 . . . C 3 11.117 3.755 24.183 1 17.59 ? CAO BI9 1686 A 1 HETATM 31 O OAI BI9 . . . C 3 10.395 4.671 23.818 1 15.81 ? OAI BI9 1686 A 1 HETATM 32 N NAN BI9 . . . C 3 11.837 2.988 23.359 1 14.44 ? NAN BI9 1686 A 1 HETATM 33 C CAM BI9 . . . C 3 11.819 3.303 21.924 1 17.53 ? CAM BI9 1686 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 33 #