data_2JKM # _model_server_result.job_id GNZDOXDa0KAwNZ57-bp4FA _model_server_result.datetime_utc '2024-12-18 11:06:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2jkm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1687}' # _entry.id 2JKM # _exptl.entry_id 2JKM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 546.085 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-{[5-CHLORO-2-({(1E,4R)-2-METHOXY-4-[(3R)-3-(METHYLAMINO)PYRROLIDIN-1-YL]CYCLOHEXA-2,5-DIEN-1-YLIDENE}AMINO)PYRIMIDIN-4-YL]AMINO}-N-(1-METHYLETHYL)BENZENESULFONAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.39 _cell.angle_gamma 90 _cell.entry_id 2JKM _cell.length_a 44.058 _cell.length_b 45.602 _cell.length_c 66.44 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2JKM _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 46 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 456 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 49 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 459 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.037 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C25 H32 Cl N7 O3 S' _chem_comp.formula_weight 546.085 _chem_comp.id BII _chem_comp.mon_nstd_flag . _chem_comp.name 2-{[5-CHLORO-2-({(1E,4R)-2-METHOXY-4-[(3R)-3-(METHYLAMINO)PYRROLIDIN-1-YL]CYCLOHEXA-2,5-DIEN-1-YLIDENE}AMINO)PYRIMIDIN-4-YL]AMINO}-N-(1-METHYLETHYL)BENZENESULFONAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAI CAN BII sing 70 n n CAN CAW BII sing 71 n n CAN NAO BII sing 72 n n NAO SAP BII sing 73 n n SAP OAX BII doub 74 n n SAP OAJ BII doub 75 n n SAP CAQ BII sing 76 n n CAQ CAY BII sing 77 n y CAQ CAK BII doub 78 n y CAY CBC BII doub 79 n y CBC CAZ BII sing 80 n y CAZ CAR BII doub 81 n y CAR CAK BII sing 82 n y CAK NAE BII sing 83 n n NAE C4 BII sing 84 n n C4 N3 BII sing 85 n y C4 C5 BII doub 86 n y N3 C2 BII doub 87 n y C5 CL5 BII sing 88 n n C5 C6 BII sing 89 n y C6 N1 BII doub 90 n y N1 C2 BII sing 91 n y C2 NAH BII sing 92 n n NAH CAM BII doub 93 n n CAM CAT BII sing 94 n n CAM CAS BII sing 95 n n CAT CBB BII doub 96 n n CAT OAU BII sing 97 n n CBB CBD BII sing 98 n n OAU CAV BII sing 99 n n CAS CBA BII doub 100 n n CBA CBD BII sing 101 n n CBD NBE BII sing 102 n n NBE CBG BII sing 103 n n NBE CBF BII sing 104 n n CBG CBI BII sing 105 n n CBF CBH BII sing 106 n n CBH CBI BII sing 107 n n CBI NBJ BII sing 108 n n NBJ CBK BII sing 109 n n CAI HAI1 BII sing 110 n n CAI HAI2 BII sing 111 n n CAI HAI3 BII sing 112 n n CAN HAN BII sing 113 n n CAW HAW1 BII sing 114 n n CAW HAW2 BII sing 115 n n CAW HAW3 BII sing 116 n n NAO HAO BII sing 117 n n CAY HAY BII sing 118 n n CBC HBC BII sing 119 n n CAZ HAZ BII sing 120 n n CAR HAR BII sing 121 n n NAE HAE BII sing 122 n n C6 H6 BII sing 123 n n CAS HAS BII sing 124 n n CBB HBB BII sing 125 n n CBD HBD BII sing 126 n n CAV HAV1 BII sing 127 n n CAV HAV2 BII sing 128 n n CAV HAV3 BII sing 129 n n CBA HBA BII sing 130 n n CBG HBG1 BII sing 131 n n CBG HBG2 BII sing 132 n n CBF HBF1 BII sing 133 n n CBF HBF2 BII sing 134 n n CBI HBI BII sing 135 n n CBH HBH1 BII sing 136 n n CBH HBH2 BII sing 137 n n NBJ HBJ BII sing 138 n n CBK HBK1 BII sing 139 n n CBK HBK2 BII sing 140 n n CBK HBK3 BII sing 141 n n # _atom_sites.entry_id 2JKM _atom_sites.fract_transf_matrix[1][1] 0.022697 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002142 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021929 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015118 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BII A 1 1687 1687 BII BII . C 3 HOH A 1 2001 2001 HOH HOH . C 3 HOH A 2 2002 2002 HOH HOH . C 3 HOH A 3 2003 2003 HOH HOH . C 3 HOH A 4 2004 2004 HOH HOH . C 3 HOH A 5 2005 2005 HOH HOH . C 3 HOH A 6 2006 2006 HOH HOH . C 3 HOH A 7 2007 2007 HOH HOH . C 3 HOH A 8 2008 2008 HOH HOH . C 3 HOH A 9 2009 2009 HOH HOH . C 3 HOH A 10 2010 2010 HOH HOH . C 3 HOH A 11 2011 2011 HOH HOH . C 3 HOH A 12 2012 2012 HOH HOH . C 3 HOH A 13 2013 2013 HOH HOH . C 3 HOH A 14 2014 2014 HOH HOH . C 3 HOH A 15 2015 2015 HOH HOH . C 3 HOH A 16 2016 2016 HOH HOH . C 3 HOH A 17 2017 2017 HOH HOH . C 3 HOH A 18 2018 2018 HOH HOH . C 3 HOH A 19 2019 2019 HOH HOH . C 3 HOH A 20 2020 2020 HOH HOH . C 3 HOH A 21 2021 2021 HOH HOH . C 3 HOH A 22 2022 2022 HOH HOH . C 3 HOH A 23 2023 2023 HOH HOH . C 3 HOH A 24 2024 2024 HOH HOH . C 3 HOH A 25 2025 2025 HOH HOH . C 3 HOH A 26 2026 2026 HOH HOH . C 3 HOH A 27 2027 2027 HOH HOH . C 3 HOH A 28 2028 2028 HOH HOH . C 3 HOH A 29 2029 2029 HOH HOH . C 3 HOH A 30 2030 2030 HOH HOH . C 3 HOH A 31 2031 2031 HOH HOH . C 3 HOH A 32 2032 2032 HOH HOH . C 3 HOH A 33 2033 2033 HOH HOH . C 3 HOH A 34 2034 2034 HOH HOH . C 3 HOH A 35 2035 2035 HOH HOH . C 3 HOH A 36 2036 2036 HOH HOH . C 3 HOH A 37 2037 2037 HOH HOH . C 3 HOH A 38 2038 2038 HOH HOH . C 3 HOH A 39 2039 2039 HOH HOH . C 3 HOH A 40 2040 2040 HOH HOH . C 3 HOH A 41 2041 2041 HOH HOH . C 3 HOH A 42 2042 2042 HOH HOH . C 3 HOH A 43 2043 2043 HOH HOH . C 3 HOH A 44 2044 2044 HOH HOH . C 3 HOH A 45 2045 2045 HOH HOH . C 3 HOH A 46 2046 2046 HOH HOH . C 3 HOH A 47 2047 2047 HOH HOH . C 3 HOH A 48 2048 2048 HOH HOH . C 3 HOH A 49 2049 2049 HOH HOH . C 3 HOH A 50 2050 2050 HOH HOH . C 3 HOH A 51 2051 2051 HOH HOH . C 3 HOH A 52 2052 2052 HOH HOH . C 3 HOH A 53 2053 2053 HOH HOH . C 3 HOH A 54 2054 2054 HOH HOH . C 3 HOH A 55 2055 2055 HOH HOH . C 3 HOH A 56 2056 2056 HOH HOH . C 3 HOH A 57 2057 2057 HOH HOH . C 3 HOH A 58 2058 2058 HOH HOH . C 3 HOH A 59 2059 2059 HOH HOH . C 3 HOH A 60 2060 2060 HOH HOH . C 3 HOH A 61 2061 2061 HOH HOH . C 3 HOH A 62 2062 2062 HOH HOH . C 3 HOH A 63 2063 2063 HOH HOH . C 3 HOH A 64 2064 2064 HOH HOH . C 3 HOH A 65 2065 2065 HOH HOH . C 3 HOH A 66 2066 2066 HOH HOH . C 3 HOH A 67 2067 2067 HOH HOH . C 3 HOH A 68 2068 2068 HOH HOH . C 3 HOH A 69 2069 2069 HOH HOH . C 3 HOH A 70 2070 2070 HOH HOH . C 3 HOH A 71 2071 2071 HOH HOH . C 3 HOH A 72 2072 2072 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAI BII . . . B 2 10.843 3.219 22.224 1 30.47 ? CAI BII 1687 A 1 HETATM 2 C CAN BII . . . B 2 11.237 3.306 23.699 1 31.45 ? CAN BII 1687 A 1 HETATM 3 C CAW BII . . . B 2 12.25 2.194 23.981 1 33.15 ? CAW BII 1687 A 1 HETATM 4 N NAO BII . . . B 2 11.817 4.643 23.995 1 30.06 ? NAO BII 1687 A 1 HETATM 5 S SAP BII . . . B 2 11.342 5.467 25.37 1 27.43 ? SAP BII 1687 A 1 HETATM 6 O OAX BII . . . B 2 12.391 6.457 25.784 1 28.19 ? OAX BII 1687 A 1 HETATM 7 O OAJ BII . . . B 2 10.092 6.235 25.078 1 29.76 ? OAJ BII 1687 A 1 HETATM 8 C CAQ BII . . . B 2 11.132 4.347 26.728 1 25.67 ? CAQ BII 1687 A 1 HETATM 9 C CAY BII . . . B 2 12.299 3.809 27.289 1 24.59 ? CAY BII 1687 A 1 HETATM 10 C CBC BII . . . B 2 12.238 2.914 28.356 1 23.31 ? CBC BII 1687 A 1 HETATM 11 C CAZ BII . . . B 2 10.994 2.553 28.863 1 24.72 ? CAZ BII 1687 A 1 HETATM 12 C CAR BII . . . B 2 9.827 3.094 28.306 1 24.12 ? CAR BII 1687 A 1 HETATM 13 C CAK BII . . . B 2 9.869 3.987 27.23 1 22.9 ? CAK BII 1687 A 1 HETATM 14 N NAE BII . . . B 2 8.739 4.515 26.699 1 19.8 ? NAE BII 1687 A 1 HETATM 15 C C4 BII . . . B 2 7.504 3.959 26.649 1 18.06 ? C4 BII 1687 A 1 HETATM 16 N N3 BII . . . B 2 7.199 2.768 27.217 1 17.67 ? N3 BII 1687 A 1 HETATM 17 C C5 BII . . . B 2 6.486 4.645 25.987 1 17.54 ? C5 BII 1687 A 1 HETATM 18 CL CL5 BII . . . B 2 6.831 6.187 25.266 1 18.01 ? CL5 BII 1687 A 1 HETATM 19 C C6 BII . . . B 2 5.208 4.08 25.909 1 16.38 ? C6 BII 1687 A 1 HETATM 20 N N1 BII . . . B 2 4.973 2.893 26.469 1 17.06 ? N1 BII 1687 A 1 HETATM 21 C C2 BII . . . B 2 5.958 2.234 27.117 1 17.82 ? C2 BII 1687 A 1 HETATM 22 N NAH BII . . . B 2 5.68 1.049 27.668 1 18.21 ? NAH BII 1687 A 1 HETATM 23 C CAM BII . . . B 2 6.518 0.344 28.442 1 19.03 ? CAM BII 1687 A 1 HETATM 24 C CAT BII . . . B 2 6.009 -0.205 29.622 1 18.75 ? CAT BII 1687 A 1 HETATM 25 C CBB BII . . . B 2 6.844 -0.966 30.445 1 19.15 ? CBB BII 1687 A 1 HETATM 26 O OAU BII . . . B 2 4.699 0.017 29.935 1 18.56 ? OAU BII 1687 A 1 HETATM 27 C CAV BII . . . B 2 4.28 -0.436 31.236 1 15.8 ? CAV BII 1687 A 1 HETATM 28 C CAS BII . . . B 2 7.861 0.101 28.093 1 18.54 ? CAS BII 1687 A 1 HETATM 29 C CBA BII . . . B 2 8.694 -0.658 28.926 1 18.63 ? CBA BII 1687 A 1 HETATM 30 C CBD BII . . . B 2 8.18 -1.204 30.113 1 19.85 ? CBD BII 1687 A 1 HETATM 31 N NBE BII . . . B 2 8.921 -1.948 30.949 1 20.49 ? NBE BII 1687 A 1 HETATM 32 C CBG BII . . . B 2 10.339 -2.301 30.813 1 22.65 ? CBG BII 1687 A 1 HETATM 33 C CBF BII . . . B 2 8.399 -2.556 32.173 1 21.86 ? CBF BII 1687 A 1 HETATM 34 C CBH BII . . . B 2 9.634 -2.813 33.027 1 24.13 ? CBH BII 1687 A 1 HETATM 35 C CBI BII . . . B 2 10.763 -2.125 32.268 1 25.38 ? CBI BII 1687 A 1 HETATM 36 N NBJ BII . . . B 2 12.084 -2.715 32.626 1 28.95 ? NBJ BII 1687 A 1 HETATM 37 C CBK BII . . . B 2 12.705 -3.535 31.541 1 30.42 ? CBK BII 1687 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 37 #