data_2JKY
#
_model_server_result.job_id            vqgGaXhvAWfFF6Va39xgMw 
_model_server_result.datetime_utc      '2024-11-15 14:55:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2jky 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":300}' 
#
_entry.id    2JKY 
#
_exptl.entry_id    2JKY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              363.221 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "GUANOSINE-5'-MONOPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2JKY 
_cell.length_a            128.443 
_cell.length_b            128.443 
_cell.length_c            56.126 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2JKY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        79 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'I 4' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 96 A CYS 97 1_555 B SG CYS 96 B CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
metalc ? metalc1 C O3' 5GP . A 5GP 300 1_555 E MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? 
metalc ? metalc2 C O2' 5GP . A 5GP 300 1_555 E MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.498 ? 
metalc ? metalc3 E MG MG . A MG 302 1_555 H O HOH . A HOH 2029 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? 
metalc ? metalc4 E MG MG . A MG 302 1_555 H O HOH . A HOH 2038 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? 
#
_chem_comp.formula           'C10 H14 N5 O8 P' 
_chem_comp.formula_weight    363.221 
_chem_comp.id                5GP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "GUANOSINE-5'-MONOPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P 5GP doub 1 n n 
P O2P 5GP sing 2 n n 
P O3P 5GP sing 3 n n 
P O5' 5GP sing 4 n n 
O2P HOP2 5GP sing 5 n n 
O3P HOP3 5GP sing 6 n n 
O5' C5' 5GP sing 7 n n 
C5' C4' 5GP sing 8 n n 
C5' "H5'1" 5GP sing 9 n n 
C5' "H5'2" 5GP sing 10 n n 
C4' O4' 5GP sing 11 n n 
C4' C3' 5GP sing 12 n n 
C4' H4' 5GP sing 13 n n 
O4' C1' 5GP sing 14 n n 
C3' O3' 5GP sing 15 n n 
C3' C2' 5GP sing 16 n n 
C3' H3' 5GP sing 17 n n 
O3' HO3' 5GP sing 18 n n 
C2' O2' 5GP sing 19 n n 
C2' C1' 5GP sing 20 n n 
C2' H2' 5GP sing 21 n n 
O2' HO2' 5GP sing 22 n n 
C1' N9 5GP sing 23 n n 
C1' H1' 5GP sing 24 n n 
N9 C8 5GP sing 25 n y 
N9 C4 5GP sing 26 n y 
C8 N7 5GP doub 27 n y 
C8 H8 5GP sing 28 n n 
N7 C5 5GP sing 29 n y 
C5 C6 5GP sing 30 n n 
C5 C4 5GP doub 31 n y 
C6 O6 5GP doub 32 n n 
C6 N1 5GP sing 33 n n 
N1 C2 5GP sing 34 n n 
N1 HN1 5GP sing 35 n n 
C2 N2 5GP sing 36 n n 
C2 N3 5GP doub 37 n n 
N2 HN21 5GP sing 38 n n 
N2 HN22 5GP sing 39 n n 
N3 C4 5GP sing 40 n n 
#
_atom_sites.entry_id                     2JKY 
_atom_sites.fract_transf_matrix[1][1]    0.007786 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007786 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017817 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 5GP A 1 300 300 5GP 5GP . 
D 3 SO4 A 1 301 301 SO4 SO4 . 
E 4 MG A 1 302 302 MG MG . 
F 2 5GP B 1 300 300 5GP 5GP . 
G 3 SO4 B 1 301 301 SO4 SO4 . 
H 5 HOH A 1 2001 2001 HOH HOH . 
H 5 HOH A 2 2002 2002 HOH HOH . 
H 5 HOH A 3 2003 2003 HOH HOH . 
H 5 HOH A 4 2004 2004 HOH HOH . 
H 5 HOH A 5 2005 2005 HOH HOH . 
H 5 HOH A 6 2006 2006 HOH HOH . 
H 5 HOH A 7 2007 2007 HOH HOH . 
H 5 HOH A 8 2008 2008 HOH HOH . 
H 5 HOH A 9 2009 2009 HOH HOH . 
H 5 HOH A 10 2010 2010 HOH HOH . 
H 5 HOH A 11 2011 2011 HOH HOH . 
H 5 HOH A 12 2012 2012 HOH HOH . 
H 5 HOH A 13 2013 2013 HOH HOH . 
H 5 HOH A 14 2014 2014 HOH HOH . 
H 5 HOH A 15 2015 2015 HOH HOH . 
H 5 HOH A 16 2016 2016 HOH HOH . 
H 5 HOH A 17 2017 2017 HOH HOH . 
H 5 HOH A 18 2018 2018 HOH HOH . 
H 5 HOH A 19 2019 2019 HOH HOH . 
H 5 HOH A 20 2020 2020 HOH HOH . 
H 5 HOH A 21 2021 2021 HOH HOH . 
H 5 HOH A 22 2022 2022 HOH HOH . 
H 5 HOH A 23 2023 2023 HOH HOH . 
H 5 HOH A 24 2024 2024 HOH HOH . 
H 5 HOH A 25 2025 2025 HOH HOH . 
H 5 HOH A 26 2026 2026 HOH HOH . 
H 5 HOH A 27 2027 2027 HOH HOH . 
H 5 HOH A 28 2028 2028 HOH HOH . 
H 5 HOH A 29 2029 2029 HOH HOH . 
H 5 HOH A 30 2030 2030 HOH HOH . 
H 5 HOH A 31 2031 2031 HOH HOH . 
H 5 HOH A 32 2032 2032 HOH HOH . 
H 5 HOH A 33 2033 2033 HOH HOH . 
H 5 HOH A 34 2034 2034 HOH HOH . 
H 5 HOH A 35 2035 2035 HOH HOH . 
H 5 HOH A 36 2036 2036 HOH HOH . 
H 5 HOH A 37 2037 2037 HOH HOH . 
H 5 HOH A 38 2038 2038 HOH HOH . 
H 5 HOH A 39 2039 2039 HOH HOH . 
H 5 HOH A 40 2040 2040 HOH HOH . 
H 5 HOH A 41 2041 2041 HOH HOH . 
H 5 HOH A 42 2042 2042 HOH HOH . 
H 5 HOH A 43 2043 2043 HOH HOH . 
H 5 HOH A 44 2044 2044 HOH HOH . 
H 5 HOH A 45 2045 2045 HOH HOH . 
H 5 HOH A 46 2046 2046 HOH HOH . 
H 5 HOH A 47 2047 2047 HOH HOH . 
H 5 HOH A 48 2048 2048 HOH HOH . 
H 5 HOH A 49 2049 2049 HOH HOH . 
H 5 HOH A 50 2050 2050 HOH HOH . 
H 5 HOH A 51 2051 2051 HOH HOH . 
H 5 HOH A 52 2052 2052 HOH HOH . 
H 5 HOH A 53 2053 2053 HOH HOH . 
H 5 HOH A 54 2054 2054 HOH HOH . 
H 5 HOH A 55 2055 2055 HOH HOH . 
H 5 HOH A 56 2056 2056 HOH HOH . 
H 5 HOH A 57 2057 2057 HOH HOH . 
H 5 HOH A 58 2058 2058 HOH HOH . 
H 5 HOH A 59 2059 2059 HOH HOH . 
H 5 HOH A 60 2060 2060 HOH HOH . 
H 5 HOH A 61 2061 2061 HOH HOH . 
H 5 HOH A 62 2062 2062 HOH HOH . 
H 5 HOH A 63 2063 2063 HOH HOH . 
H 5 HOH A 64 2064 2064 HOH HOH . 
H 5 HOH A 65 2065 2065 HOH HOH . 
H 5 HOH A 66 2066 2066 HOH HOH . 
H 5 HOH A 67 2067 2067 HOH HOH . 
H 5 HOH A 68 2068 2068 HOH HOH . 
H 5 HOH A 69 2069 2069 HOH HOH . 
I 5 HOH B 1 2001 2001 HOH HOH . 
I 5 HOH B 2 2002 2002 HOH HOH . 
I 5 HOH B 3 2003 2003 HOH HOH . 
I 5 HOH B 4 2004 2004 HOH HOH . 
I 5 HOH B 5 2005 2005 HOH HOH . 
I 5 HOH B 6 2006 2006 HOH HOH . 
I 5 HOH B 7 2007 2007 HOH HOH . 
I 5 HOH B 8 2008 2008 HOH HOH . 
I 5 HOH B 9 2009 2009 HOH HOH . 
I 5 HOH B 10 2010 2010 HOH HOH . 
I 5 HOH B 11 2011 2011 HOH HOH . 
I 5 HOH B 12 2012 2012 HOH HOH . 
I 5 HOH B 13 2013 2013 HOH HOH . 
I 5 HOH B 14 2014 2014 HOH HOH . 
I 5 HOH B 15 2015 2015 HOH HOH . 
I 5 HOH B 16 2016 2016 HOH HOH . 
I 5 HOH B 17 2017 2017 HOH HOH . 
I 5 HOH B 18 2018 2018 HOH HOH . 
I 5 HOH B 19 2019 2019 HOH HOH . 
I 5 HOH B 20 2020 2020 HOH HOH . 
I 5 HOH B 21 2021 2021 HOH HOH . 
I 5 HOH B 22 2022 2022 HOH HOH . 
I 5 HOH B 23 2023 2023 HOH HOH . 
I 5 HOH B 24 2024 2024 HOH HOH . 
I 5 HOH B 25 2025 2025 HOH HOH . 
I 5 HOH B 26 2026 2026 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P 5GP . . . F 2 5.327 33.854 -24.68 1 68.6 ? P 5GP 300 B 1 
HETATM 2 O O1P 5GP . . . F 2 6.652 34.541 -24.898 1 67.97 ? O1P 5GP 300 B 1 
HETATM 3 O O2P 5GP . . . F 2 4.481 34.487 -23.609 1 68.43 ? O2P 5GP 300 B 1 
HETATM 4 O O3P 5GP . . . F 2 4.573 33.499 -25.935 1 69.49 ? O3P 5GP 300 B 1 
HETATM 5 O O5' 5GP . . . F 2 5.678 32.386 -24.12 1 69.06 ? O5' 5GP 300 B 1 
HETATM 6 C C5' 5GP . . . F 2 6.697 32.161 -23.149 1 67.9 ? C5' 5GP 300 B 1 
HETATM 7 C C4' 5GP . . . F 2 6.303 30.948 -22.325 1 67.71 ? C4' 5GP 300 B 1 
HETATM 8 O O4' 5GP . . . F 2 5.748 29.922 -23.16 1 67.91 ? O4' 5GP 300 B 1 
HETATM 9 C C3' 5GP . . . F 2 7.517 30.34 -21.645 1 67.34 ? C3' 5GP 300 B 1 
HETATM 10 O O3' 5GP . . . F 2 7.665 30.813 -20.305 1 66.89 ? O3' 5GP 300 B 1 
HETATM 11 C C2' 5GP . . . F 2 7.265 28.849 -21.716 1 67.66 ? C2' 5GP 300 B 1 
HETATM 12 O O2' 5GP . . . F 2 6.489 28.409 -20.598 1 67.04 ? O2' 5GP 300 B 1 
HETATM 13 C C1' 5GP . . . F 2 6.449 28.682 -22.989 1 68.36 ? C1' 5GP 300 B 1 
HETATM 14 N N9 5GP . . . F 2 7.367 28.444 -24.14 1 68.83 ? N9 5GP 300 B 1 
HETATM 15 C C8 5GP . . . F 2 7.457 29.214 -25.236 1 68.98 ? C8 5GP 300 B 1 
HETATM 16 N N7 5GP . . . F 2 8.394 28.708 -26.068 1 69.28 ? N7 5GP 300 B 1 
HETATM 17 C C5 5GP . . . F 2 8.9 27.602 -25.486 1 69.18 ? C5 5GP 300 B 1 
HETATM 18 C C6 5GP . . . F 2 9.877 26.685 -25.864 1 69.17 ? C6 5GP 300 B 1 
HETATM 19 O O6 5GP . . . F 2 10.477 26.805 -26.956 1 69.21 ? O6 5GP 300 B 1 
HETATM 20 N N1 5GP . . . F 2 10.169 25.661 -25.049 1 69.21 ? N1 5GP 300 B 1 
HETATM 21 C C2 5GP . . . F 2 9.537 25.506 -23.873 1 69.21 ? C2 5GP 300 B 1 
HETATM 22 N N2 5GP . . . F 2 9.858 24.461 -23.077 1 68.96 ? N2 5GP 300 B 1 
HETATM 23 N N3 5GP . . . F 2 8.582 26.384 -23.476 1 69.14 ? N3 5GP 300 B 1 
HETATM 24 C C4 5GP . . . F 2 8.249 27.439 -24.269 1 69.16 ? C4 5GP 300 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           272 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           24 
#