data_2JKZ # _model_server_result.job_id voBXWsiZjAcQx41MSrH7ag _model_server_result.datetime_utc '2024-12-02 18:23:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2jkz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":300}' # _entry.id 2JKZ # _exptl.entry_id 2JKZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 363.221 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2JKZ _cell.length_a 118.077 _cell.length_b 176.362 _cell.length_c 91.109 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2JKZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H 1 1 C,D,I,J,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N ? 2 K N N # _chem_comp.formula 'C10 H14 N5 O8 P' _chem_comp.formula_weight 363.221 _chem_comp.id 5GP _chem_comp.mon_nstd_flag . _chem_comp.name "GUANOSINE-5'-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P 5GP doub 1 n n P O2P 5GP sing 2 n n P O3P 5GP sing 3 n n P O5' 5GP sing 4 n n O2P HOP2 5GP sing 5 n n O3P HOP3 5GP sing 6 n n O5' C5' 5GP sing 7 n n C5' C4' 5GP sing 8 n n C5' "H5'1" 5GP sing 9 n n C5' "H5'2" 5GP sing 10 n n C4' O4' 5GP sing 11 n n C4' C3' 5GP sing 12 n n C4' H4' 5GP sing 13 n n O4' C1' 5GP sing 14 n n C3' O3' 5GP sing 15 n n C3' C2' 5GP sing 16 n n C3' H3' 5GP sing 17 n n O3' HO3' 5GP sing 18 n n C2' O2' 5GP sing 19 n n C2' C1' 5GP sing 20 n n C2' H2' 5GP sing 21 n n O2' HO2' 5GP sing 22 n n C1' N9 5GP sing 23 n n C1' H1' 5GP sing 24 n n N9 C8 5GP sing 25 n y N9 C4 5GP sing 26 n y C8 N7 5GP doub 27 n y C8 H8 5GP sing 28 n n N7 C5 5GP sing 29 n y C5 C6 5GP sing 30 n n C5 C4 5GP doub 31 n y C6 O6 5GP doub 32 n n C6 N1 5GP sing 33 n n N1 C2 5GP sing 34 n n N1 HN1 5GP sing 35 n n C2 N2 5GP sing 36 n n C2 N3 5GP doub 37 n n N2 HN21 5GP sing 38 n n N2 HN22 5GP sing 39 n n N3 C4 5GP sing 40 n n # _atom_sites.entry_id 2JKZ _atom_sites.fract_transf_matrix[1][1] 0.008469 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00567 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010976 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 5GP A 1 300 300 5GP 5GP . F 3 SO4 A 1 301 301 SO4 SO4 . G 2 5GP B 1 300 300 5GP 5GP . H 3 SO4 B 1 301 301 SO4 SO4 . I 2 5GP C 1 300 300 5GP 5GP . J 3 SO4 C 1 301 301 SO4 SO4 . K 2 5GP D 1 300 300 5GP 5GP . L 3 SO4 D 1 301 301 SO4 SO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P 5GP . . . E 2 22.789 58.262 39.99 1 121.26 ? P 5GP 300 A 1 HETATM 2 O O1P 5GP . . . E 2 21.812 59.309 40.309 1 120.97 ? O1P 5GP 300 A 1 HETATM 3 O O2P 5GP . . . E 2 23.776 58.692 38.917 1 120.81 ? O2P 5GP 300 A 1 HETATM 4 O O3P 5GP . . . E 2 23.566 57.809 41.278 1 120.47 ? O3P 5GP 300 A 1 HETATM 5 O O5' 5GP . . . E 2 22.085 56.878 39.465 1 120.96 ? O5' 5GP 300 A 1 HETATM 6 C C5' 5GP . . . E 2 22.917 55.723 39.09 1 119.75 ? C5' 5GP 300 A 1 HETATM 7 C C4' 5GP . . . E 2 22.179 54.451 38.591 1 117.61 ? C4' 5GP 300 A 1 HETATM 8 O O4' 5GP . . . E 2 22.486 53.431 39.633 1 117.77 ? O4' 5GP 300 A 1 HETATM 9 C C3' 5GP . . . E 2 20.648 54.371 38.553 1 115.06 ? C3' 5GP 300 A 1 HETATM 10 O O3' 5GP . . . E 2 20.041 54.926 37.402 1 114.69 ? O3' 5GP 300 A 1 HETATM 11 C C2' 5GP . . . E 2 20.378 52.888 38.685 1 114.24 ? C2' 5GP 300 A 1 HETATM 12 O O2' 5GP . . . E 2 20.518 52.199 37.423 1 109.92 ? O2' 5GP 300 A 1 HETATM 13 C C1' 5GP . . . E 2 21.394 52.473 39.727 1 115.32 ? C1' 5GP 300 A 1 HETATM 14 N N9 5GP . . . E 2 20.938 52.498 41.152 1 115.7 ? N9 5GP 300 A 1 HETATM 15 C C8 5GP . . . E 2 21.131 53.465 42.121 1 115.83 ? C8 5GP 300 A 1 HETATM 16 N N7 5GP . . . E 2 20.604 53.208 43.291 1 116.14 ? N7 5GP 300 A 1 HETATM 17 C C5 5GP . . . E 2 20.012 51.96 43.068 1 115.81 ? C5 5GP 300 A 1 HETATM 18 C C6 5GP . . . E 2 19.264 51.138 43.985 1 116.73 ? C6 5GP 300 A 1 HETATM 19 O O6 5GP . . . E 2 18.993 51.374 45.167 1 116.75 ? O6 5GP 300 A 1 HETATM 20 N N1 5GP . . . E 2 18.815 49.905 43.361 1 117.06 ? N1 5GP 300 A 1 HETATM 21 C C2 5GP . . . E 2 19.076 49.55 42.021 1 116.06 ? C2 5GP 300 A 1 HETATM 22 N N2 5GP . . . E 2 18.566 48.353 41.646 1 115.06 ? N2 5GP 300 A 1 HETATM 23 N N3 5GP . . . E 2 19.781 50.331 41.166 1 115.92 ? N3 5GP 300 A 1 HETATM 24 C C4 5GP . . . E 2 20.214 51.516 41.757 1 115.41 ? C4 5GP 300 A 1 # _model_server_stats.io_time_ms 28 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 24 #