data_2JKZ # _model_server_result.job_id UvsLWXGMjR_rFXiCykLOPg _model_server_result.datetime_utc '2024-10-14 05:20:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2jkz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":300}' # _entry.id 2JKZ # _exptl.entry_id 2JKZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 363.221 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2JKZ _cell.length_a 118.077 _cell.length_b 176.362 _cell.length_c 91.109 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2JKZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H 1 1 C,D,I,J,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N ? 2 K N N # _chem_comp.formula 'C10 H14 N5 O8 P' _chem_comp.formula_weight 363.221 _chem_comp.id 5GP _chem_comp.mon_nstd_flag . _chem_comp.name "GUANOSINE-5'-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P 5GP doub 1 n n P O2P 5GP sing 2 n n P O3P 5GP sing 3 n n P O5' 5GP sing 4 n n O2P HOP2 5GP sing 5 n n O3P HOP3 5GP sing 6 n n O5' C5' 5GP sing 7 n n C5' C4' 5GP sing 8 n n C5' "H5'1" 5GP sing 9 n n C5' "H5'2" 5GP sing 10 n n C4' O4' 5GP sing 11 n n C4' C3' 5GP sing 12 n n C4' H4' 5GP sing 13 n n O4' C1' 5GP sing 14 n n C3' O3' 5GP sing 15 n n C3' C2' 5GP sing 16 n n C3' H3' 5GP sing 17 n n O3' HO3' 5GP sing 18 n n C2' O2' 5GP sing 19 n n C2' C1' 5GP sing 20 n n C2' H2' 5GP sing 21 n n O2' HO2' 5GP sing 22 n n C1' N9 5GP sing 23 n n C1' H1' 5GP sing 24 n n N9 C8 5GP sing 25 n y N9 C4 5GP sing 26 n y C8 N7 5GP doub 27 n y C8 H8 5GP sing 28 n n N7 C5 5GP sing 29 n y C5 C6 5GP sing 30 n n C5 C4 5GP doub 31 n y C6 O6 5GP doub 32 n n C6 N1 5GP sing 33 n n N1 C2 5GP sing 34 n n N1 HN1 5GP sing 35 n n C2 N2 5GP sing 36 n n C2 N3 5GP doub 37 n n N2 HN21 5GP sing 38 n n N2 HN22 5GP sing 39 n n N3 C4 5GP sing 40 n n # _atom_sites.entry_id 2JKZ _atom_sites.fract_transf_matrix[1][1] 0.008469 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00567 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010976 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 5GP A 1 300 300 5GP 5GP . F 3 SO4 A 1 301 301 SO4 SO4 . G 2 5GP B 1 300 300 5GP 5GP . H 3 SO4 B 1 301 301 SO4 SO4 . I 2 5GP C 1 300 300 5GP 5GP . J 3 SO4 C 1 301 301 SO4 SO4 . K 2 5GP D 1 300 300 5GP 5GP . L 3 SO4 D 1 301 301 SO4 SO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P 5GP . . . I 2 4.151 75.056 60.04 1 114.95 ? P 5GP 300 C 1 HETATM 2 O O1P 5GP . . . I 2 5.337 74.212 59.883 1 113.94 ? O1P 5GP 300 C 1 HETATM 3 O O2P 5GP . . . I 2 4.361 76.177 61.037 1 113.74 ? O2P 5GP 300 C 1 HETATM 4 O O3P 5GP . . . I 2 3.709 75.649 58.658 1 115.56 ? O3P 5GP 300 C 1 HETATM 5 O O5' 5GP . . . I 2 2.823 74.219 60.522 1 115.24 ? O5' 5GP 300 C 1 HETATM 6 C C5' 5GP . . . I 2 1.55 74.913 60.734 1 114.68 ? C5' 5GP 300 C 1 HETATM 7 C C4' 5GP . . . I 2 0.359 74.05 61.197 1 113.99 ? C4' 5GP 300 C 1 HETATM 8 O O4' 5GP . . . I 2 -0.591 74.119 60.062 1 114.64 ? O4' 5GP 300 C 1 HETATM 9 C C3' 5GP . . . I 2 0.482 72.536 61.372 1 112.39 ? C3' 5GP 300 C 1 HETATM 10 O O3' 5GP . . . I 2 1.013 72.124 62.617 1 112 ? O3' 5GP 300 C 1 HETATM 11 C C2' 5GP . . . I 2 -0.936 72.051 61.169 1 112.96 ? C2' 5GP 300 C 1 HETATM 12 O O2' 5GP . . . I 2 -1.745 72.211 62.369 1 112.61 ? O2' 5GP 300 C 1 HETATM 13 C C1' 5GP . . . I 2 -1.387 72.898 60.011 1 113.32 ? C1' 5GP 300 C 1 HETATM 14 N N9 5GP . . . I 2 -1.193 72.327 58.65 1 112.87 ? N9 5GP 300 C 1 HETATM 15 C C8 5GP . . . I 2 -0.185 72.561 57.737 1 112.7 ? C8 5GP 300 C 1 HETATM 16 N N7 5GP . . . I 2 -0.281 71.906 56.608 1 113.1 ? N7 5GP 300 C 1 HETATM 17 C C5 5GP . . . I 2 -1.46 71.176 56.803 1 113.38 ? C5 5GP 300 C 1 HETATM 18 C C6 5GP . . . I 2 -2.104 70.254 55.91 1 114.96 ? C6 5GP 300 C 1 HETATM 19 O O6 5GP . . . I 2 -1.743 69.922 54.781 1 117.13 ? O6 5GP 300 C 1 HETATM 20 N N1 5GP . . . I 2 -3.312 69.7 56.487 1 115.16 ? N1 5GP 300 C 1 HETATM 21 C C2 5GP . . . I 2 -3.801 70.026 57.768 1 113.9 ? C2 5GP 300 C 1 HETATM 22 N N2 5GP . . . I 2 -4.948 69.397 58.108 1 114.73 ? N2 5GP 300 C 1 HETATM 23 N N3 5GP . . . I 2 -3.189 70.898 58.603 1 112.75 ? N3 5GP 300 C 1 HETATM 24 C C4 5GP . . . I 2 -2.027 71.43 58.054 1 112.56 ? C4 5GP 300 C 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 24 #