data_2JLD # _model_server_result.job_id GwFq4UKDMdPgey-0I31snQ _model_server_result.datetime_utc '2025-01-30 05:10:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2jld # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1385}' # _entry.id 2JLD # _exptl.entry_id 2JLD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 629.515 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'RUTHENIUM PYRIDOCARBAZOLE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2JLD _cell.length_a 83.041 _cell.length_b 86.114 _cell.length_c 177.398 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2JLD _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 software_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? dimeric 2 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G 1 1 B,E,G 2 1 A,C,D,F 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # _chem_comp.formula 'C27 H17 F N4 O7 Ru 2' _chem_comp.formula_weight 629.515 _chem_comp.id AG1 _chem_comp.mon_nstd_flag . _chem_comp.name 'RUTHENIUM PYRIDOCARBAZOLE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O41 C31 AG1 doub 1 n n C31 C30 AG1 sing 2 n n C31 N20 AG1 sing 3 n n C30 C29 AG1 sing 4 n y C30 C33 AG1 doub 5 n y C29 C28 AG1 sing 6 n y C29 C22 AG1 doub 7 n y C28 C23 AG1 sing 8 n y C28 C27 AG1 doub 9 n y C23 C24 AG1 doub 10 n y C23 N19 AG1 sing 11 n y C27 C26 AG1 sing 12 n y C26 C25 AG1 doub 13 n y C26 O2 AG1 sing 14 n n C25 C24 AG1 sing 15 n y C33 C32 AG1 sing 16 n n C33 C34 AG1 sing 17 n y C32 N20 AG1 sing 18 n n C32 O1 AG1 doub 19 n n C34 C40 AG1 doub 20 n y C34 C36 AG1 sing 21 n y C40 C22 AG1 sing 22 n y C40 N21 AG1 sing 23 n y C22 N19 AG1 sing 24 n y N19 RU AG1 sing 25 n n N21 C38 AG1 doub 26 n y N21 RU AG1 sing 27 n n C38 C37 AG1 sing 28 n y C37 C36 AG1 doub 29 n y C37 F5 AG1 sing 30 n n RU C12 AG1 sing 31 n n RU C14 AG1 sing 32 n n C15 C16 AG1 doub 33 n n C15 C14 AG1 sing 34 n n C16 C17 AG1 sing 35 n n C17 C18 AG1 doub 36 n n C18 C14 AG1 sing 37 n n C12 O13 AG1 trip 38 n n C14 C3 AG1 sing 39 n n C3 O9 AG1 doub 40 n n C3 N4 AG1 sing 41 n n N4 C6 AG1 sing 42 n n C6 C10 AG1 sing 43 n n C6 C7 AG1 sing 44 n n C7 O8 AG1 sing 45 n n C7 O11 AG1 doub 46 n n N20 H20 AG1 sing 47 n n C27 H27 AG1 sing 48 n n C24 H24 AG1 sing 49 n n C25 H25 AG1 sing 50 n n O2 H2 AG1 sing 51 n n C36 H36 AG1 sing 52 n n C38 H38 AG1 sing 53 n n C15 H151 AG1 sing 54 n n C16 H16 AG1 sing 55 n n C17 H171 AG1 sing 56 n n C18 H18 AG1 sing 57 n n N4 H4 AG1 sing 58 n n C6 H6 AG1 sing 59 n n C10 H101 AG1 sing 60 n n C10 H102 AG1 sing 61 n n C10 H103 AG1 sing 62 n n O8 H8 AG1 sing 63 n n # _atom_sites.entry_id 2JLD _atom_sites.fract_transf_matrix[1][1] 0.012042 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011613 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005637 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 AG1 A 1 1385 1385 AG1 AG1 . E 3 AG1 B 1 1385 1385 AG1 AG1 . F 4 HOH A 1 2001 2001 HOH HOH . F 4 HOH A 2 2002 2002 HOH HOH . F 4 HOH A 3 2003 2003 HOH HOH . F 4 HOH A 4 2004 2004 HOH HOH . F 4 HOH A 5 2005 2005 HOH HOH . F 4 HOH A 6 2006 2006 HOH HOH . F 4 HOH A 7 2007 2007 HOH HOH . F 4 HOH A 8 2008 2008 HOH HOH . F 4 HOH A 9 2009 2009 HOH HOH . F 4 HOH A 10 2010 2010 HOH HOH . F 4 HOH A 11 2011 2011 HOH HOH . F 4 HOH A 12 2012 2012 HOH HOH . F 4 HOH A 13 2013 2013 HOH HOH . F 4 HOH A 14 2014 2014 HOH HOH . F 4 HOH A 15 2015 2015 HOH HOH . F 4 HOH A 16 2016 2016 HOH HOH . F 4 HOH A 17 2017 2017 HOH HOH . F 4 HOH A 18 2018 2018 HOH HOH . F 4 HOH A 19 2019 2019 HOH HOH . F 4 HOH A 20 2020 2020 HOH HOH . F 4 HOH A 21 2021 2021 HOH HOH . F 4 HOH A 22 2022 2022 HOH HOH . F 4 HOH A 23 2023 2023 HOH HOH . F 4 HOH A 24 2024 2024 HOH HOH . F 4 HOH A 25 2025 2025 HOH HOH . F 4 HOH A 26 2026 2026 HOH HOH . F 4 HOH A 27 2027 2027 HOH HOH . F 4 HOH A 28 2028 2028 HOH HOH . F 4 HOH A 29 2029 2029 HOH HOH . F 4 HOH A 30 2030 2030 HOH HOH . F 4 HOH A 31 2031 2031 HOH HOH . F 4 HOH A 32 2032 2032 HOH HOH . F 4 HOH A 33 2033 2033 HOH HOH . F 4 HOH A 34 2034 2034 HOH HOH . F 4 HOH A 35 2035 2035 HOH HOH . F 4 HOH A 36 2036 2036 HOH HOH . F 4 HOH A 37 2037 2037 HOH HOH . F 4 HOH A 38 2038 2038 HOH HOH . F 4 HOH A 39 2039 2039 HOH HOH . F 4 HOH A 40 2040 2040 HOH HOH . F 4 HOH A 41 2041 2041 HOH HOH . F 4 HOH A 42 2042 2042 HOH HOH . F 4 HOH A 43 2043 2043 HOH HOH . F 4 HOH A 44 2044 2044 HOH HOH . F 4 HOH A 45 2045 2045 HOH HOH . F 4 HOH A 46 2046 2046 HOH HOH . F 4 HOH A 47 2047 2047 HOH HOH . F 4 HOH A 48 2048 2048 HOH HOH . F 4 HOH A 49 2049 2049 HOH HOH . F 4 HOH A 50 2050 2050 HOH HOH . F 4 HOH A 51 2051 2051 HOH HOH . F 4 HOH A 52 2052 2052 HOH HOH . F 4 HOH A 53 2053 2053 HOH HOH . F 4 HOH A 54 2054 2054 HOH HOH . F 4 HOH A 55 2055 2055 HOH HOH . F 4 HOH A 56 2056 2056 HOH HOH . F 4 HOH A 57 2057 2057 HOH HOH . F 4 HOH A 58 2058 2058 HOH HOH . F 4 HOH A 59 2059 2059 HOH HOH . F 4 HOH A 60 2060 2060 HOH HOH . F 4 HOH A 61 2061 2061 HOH HOH . F 4 HOH A 62 2062 2062 HOH HOH . F 4 HOH A 63 2063 2063 HOH HOH . F 4 HOH A 64 2064 2064 HOH HOH . F 4 HOH A 65 2065 2065 HOH HOH . F 4 HOH A 66 2066 2066 HOH HOH . F 4 HOH A 67 2067 2067 HOH HOH . F 4 HOH A 68 2068 2068 HOH HOH . F 4 HOH A 69 2069 2069 HOH HOH . F 4 HOH A 70 2070 2070 HOH HOH . F 4 HOH A 71 2071 2071 HOH HOH . F 4 HOH A 72 2072 2072 HOH HOH . F 4 HOH A 73 2073 2073 HOH HOH . F 4 HOH A 74 2074 2074 HOH HOH . F 4 HOH A 75 2075 2075 HOH HOH . F 4 HOH A 76 2076 2076 HOH HOH . F 4 HOH A 77 2077 2077 HOH HOH . F 4 HOH A 78 2078 2078 HOH HOH . F 4 HOH A 79 2079 2079 HOH HOH . F 4 HOH A 80 2080 2080 HOH HOH . F 4 HOH A 81 2081 2081 HOH HOH . F 4 HOH A 82 2082 2082 HOH HOH . F 4 HOH A 83 2083 2083 HOH HOH . F 4 HOH A 84 2084 2084 HOH HOH . F 4 HOH A 85 2085 2085 HOH HOH . G 4 HOH B 1 2001 2001 HOH HOH . G 4 HOH B 2 2002 2002 HOH HOH . G 4 HOH B 3 2003 2003 HOH HOH . G 4 HOH B 4 2004 2004 HOH HOH . G 4 HOH B 5 2005 2005 HOH HOH . G 4 HOH B 6 2006 2006 HOH HOH . G 4 HOH B 7 2007 2007 HOH HOH . G 4 HOH B 8 2008 2008 HOH HOH . G 4 HOH B 9 2009 2009 HOH HOH . G 4 HOH B 10 2010 2010 HOH HOH . G 4 HOH B 11 2011 2011 HOH HOH . G 4 HOH B 12 2012 2012 HOH HOH . G 4 HOH B 13 2013 2013 HOH HOH . G 4 HOH B 14 2014 2014 HOH HOH . G 4 HOH B 15 2015 2015 HOH HOH . G 4 HOH B 16 2016 2016 HOH HOH . G 4 HOH B 17 2017 2017 HOH HOH . G 4 HOH B 18 2018 2018 HOH HOH . G 4 HOH B 19 2019 2019 HOH HOH . G 4 HOH B 20 2020 2020 HOH HOH . G 4 HOH B 21 2021 2021 HOH HOH . G 4 HOH B 22 2022 2022 HOH HOH . G 4 HOH B 23 2023 2023 HOH HOH . G 4 HOH B 24 2024 2024 HOH HOH . G 4 HOH B 25 2025 2025 HOH HOH . G 4 HOH B 26 2026 2026 HOH HOH . G 4 HOH B 27 2027 2027 HOH HOH . G 4 HOH B 28 2028 2028 HOH HOH . G 4 HOH B 29 2029 2029 HOH HOH . G 4 HOH B 30 2030 2030 HOH HOH . G 4 HOH B 31 2031 2031 HOH HOH . G 4 HOH B 32 2032 2032 HOH HOH . G 4 HOH B 33 2033 2033 HOH HOH . G 4 HOH B 34 2034 2034 HOH HOH . G 4 HOH B 35 2035 2035 HOH HOH . G 4 HOH B 36 2036 2036 HOH HOH . G 4 HOH B 37 2037 2037 HOH HOH . G 4 HOH B 38 2038 2038 HOH HOH . G 4 HOH B 39 2039 2039 HOH HOH . G 4 HOH B 40 2040 2040 HOH HOH . G 4 HOH B 41 2041 2041 HOH HOH . G 4 HOH B 42 2042 2042 HOH HOH . G 4 HOH B 43 2043 2043 HOH HOH . G 4 HOH B 44 2044 2044 HOH HOH . G 4 HOH B 45 2045 2045 HOH HOH . G 4 HOH B 46 2046 2046 HOH HOH . G 4 HOH B 47 2047 2047 HOH HOH . G 4 HOH B 48 2048 2048 HOH HOH . G 4 HOH B 49 2049 2049 HOH HOH . G 4 HOH B 50 2050 2050 HOH HOH . G 4 HOH B 51 2051 2051 HOH HOH . G 4 HOH B 52 2052 2052 HOH HOH . G 4 HOH B 53 2053 2053 HOH HOH . G 4 HOH B 54 2054 2054 HOH HOH . G 4 HOH B 55 2055 2055 HOH HOH . G 4 HOH B 56 2056 2056 HOH HOH . G 4 HOH B 57 2057 2057 HOH HOH . G 4 HOH B 58 2058 2058 HOH HOH . G 4 HOH B 59 2059 2059 HOH HOH . G 4 HOH B 60 2060 2060 HOH HOH . G 4 HOH B 61 2061 2061 HOH HOH . G 4 HOH B 62 2062 2062 HOH HOH . G 4 HOH B 63 2063 2063 HOH HOH . G 4 HOH B 64 2064 2064 HOH HOH . G 4 HOH B 65 2065 2065 HOH HOH . G 4 HOH B 66 2066 2066 HOH HOH . G 4 HOH B 67 2067 2067 HOH HOH . G 4 HOH B 68 2068 2068 HOH HOH . G 4 HOH B 69 2069 2069 HOH HOH . G 4 HOH B 70 2070 2070 HOH HOH . G 4 HOH B 71 2071 2071 HOH HOH . G 4 HOH B 72 2072 2072 HOH HOH . G 4 HOH B 73 2073 2073 HOH HOH . G 4 HOH B 74 2074 2074 HOH HOH . G 4 HOH B 75 2075 2075 HOH HOH . G 4 HOH B 76 2076 2076 HOH HOH . G 4 HOH B 77 2077 2077 HOH HOH . G 4 HOH B 78 2078 2078 HOH HOH . G 4 HOH B 79 2079 2079 HOH HOH . G 4 HOH B 80 2080 2080 HOH HOH . G 4 HOH B 81 2081 2081 HOH HOH . G 4 HOH B 82 2082 2082 HOH HOH . G 4 HOH B 83 2083 2083 HOH HOH . G 4 HOH B 84 2084 2084 HOH HOH . G 4 HOH B 85 2085 2085 HOH HOH . G 4 HOH B 86 2086 2086 HOH HOH . G 4 HOH B 87 2087 2087 HOH HOH . G 4 HOH B 88 2088 2088 HOH HOH . G 4 HOH B 89 2089 2089 HOH HOH . G 4 HOH B 90 2090 2090 HOH HOH . G 4 HOH B 91 2091 2091 HOH HOH . G 4 HOH B 92 2092 2092 HOH HOH . G 4 HOH B 93 2093 2093 HOH HOH . G 4 HOH B 94 2094 2094 HOH HOH . G 4 HOH B 95 2095 2095 HOH HOH . G 4 HOH B 96 2096 2096 HOH HOH . G 4 HOH B 97 2097 2097 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C26 AG1 . . . D 3 42.032 82.419 36.209 1 35.61 ? C26 AG1 1385 A 1 HETATM 2 C C25 AG1 . . . D 3 42.356 83.106 34.999 1 30.98 ? C25 AG1 1385 A 1 HETATM 3 C C24 AG1 . . . D 3 43.164 82.491 33.992 1 33.67 ? C24 AG1 1385 A 1 HETATM 4 C C23 AG1 . . . D 3 43.633 81.182 34.183 1 32.8 ? C23 AG1 1385 A 1 HETATM 5 C C28 AG1 . . . D 3 43.272 80.522 35.371 1 33.03 ? C28 AG1 1385 A 1 HETATM 6 C C27 AG1 . . . D 3 42.497 81.108 36.379 1 39.19 ? C27 AG1 1385 A 1 HETATM 7 C C22 AG1 . . . D 3 44.497 79.29 34.06 1 44.96 ? C22 AG1 1385 A 1 HETATM 8 C C29 AG1 . . . D 3 43.869 79.217 35.278 1 49.04 ? C29 AG1 1385 A 1 HETATM 9 C C40 AG1 . . . D 3 45.225 78.278 33.524 1 37.07 ? C40 AG1 1385 A 1 HETATM 10 C C34 AG1 . . . D 3 45.372 77.076 34.243 1 45.5 ? C34 AG1 1385 A 1 HETATM 11 C C33 AG1 . . . D 3 44.716 76.975 35.497 1 42.62 ? C33 AG1 1385 A 1 HETATM 12 C C30 AG1 . . . D 3 43.972 78.045 36.025 1 39.47 ? C30 AG1 1385 A 1 HETATM 13 C C31 AG1 . . . D 3 43.496 77.659 37.29 1 40.36 ? C31 AG1 1385 A 1 HETATM 14 C C38 AG1 . . . D 3 46.504 77.601 31.718 1 33.97 ? C38 AG1 1385 A 1 HETATM 15 C C37 AG1 . . . D 3 46.69 76.359 32.386 1 32.12 ? C37 AG1 1385 A 1 HETATM 16 C C36 AG1 . . . D 3 46.142 76.074 33.636 1 27.91 ? C36 AG1 1385 A 1 HETATM 17 C C32 AG1 . . . D 3 44.682 75.975 36.488 1 40.11 ? C32 AG1 1385 A 1 HETATM 18 F F5 AG1 . . . D 3 47.423 75.382 31.79 1 39.3 ? F5 AG1 1385 A 1 HETATM 19 N N21 AG1 . . . D 3 45.736 78.552 32.283 1 36.85 ? N21 AG1 1385 A 1 HETATM 20 N N19 AG1 . . . D 3 44.318 80.385 33.437 1 33.85 ? N19 AG1 1385 A 1 HETATM 21 N N20 AG1 . . . D 3 43.941 76.397 37.573 1 32.7 ? N20 AG1 1385 A 1 HETATM 22 O O2 AG1 . . . D 3 41.278 83.001 37.188 1 40.8 ? O2 AG1 1385 A 1 HETATM 23 O O1 AG1 . . . D 3 45.207 74.884 36.466 1 34.14 ? O1 AG1 1385 A 1 HETATM 24 O O41 AG1 . . . D 3 42.774 78.264 38.056 1 29.81 ? O41 AG1 1385 A 1 HETATM 25 RU RU AG1 . . . D 3 45.278 80.437 31.61 1 35.93 ? RU AG1 1385 A 1 HETATM 26 C C12 AG1 . . . D 3 43.711 79.889 30.52 1 23.16 ? C12 AG1 1385 A 1 HETATM 27 O O13 AG1 . . . D 3 42.842 79.567 29.952 1 42.89 ? O13 AG1 1385 A 1 HETATM 28 C C18 AG1 . . . D 3 46.628 82.146 31.855 1 34.58 ? C18 AG1 1385 A 1 HETATM 29 C C14 AG1 . . . D 3 45.787 82.358 30.76 1 37.94 ? C14 AG1 1385 A 1 HETATM 30 C C15 AG1 . . . D 3 46.079 81.383 29.792 1 32.88 ? C15 AG1 1385 A 1 HETATM 31 C C16 AG1 . . . D 3 47.092 80.573 30.28 1 28.28 ? C16 AG1 1385 A 1 HETATM 32 C C17 AG1 . . . D 3 47.427 81.046 31.551 1 34.14 ? C17 AG1 1385 A 1 HETATM 33 C C3 AG1 . . . D 3 44.78 83.426 30.602 1 39.85 ? C3 AG1 1385 A 1 HETATM 34 C C10 AG1 . . . D 3 41.685 83.764 28.226 1 59.49 ? C10 AG1 1385 A 1 HETATM 35 C C6 AG1 . . . D 3 43.013 84.267 28.826 1 77.67 ? C6 AG1 1385 A 1 HETATM 36 C C7 AG1 . . . D 3 42.845 85.431 29.82 1 86.6 ? C7 AG1 1385 A 1 HETATM 37 N N4 AG1 . . . D 3 44.037 83.364 29.412 1 51.77 ? N4 AG1 1385 A 1 HETATM 38 O O9 AG1 . . . D 3 44.645 84.204 31.542 1 50.18 ? O9 AG1 1385 A 1 HETATM 39 O O8 AG1 . . . D 3 42.1 85.155 30.927 1 83.79 ? O8 AG1 1385 A 1 HETATM 40 O O11 AG1 . . . D 3 43.387 86.506 29.634 1 67.12 ? O11 AG1 1385 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 40 #