data_2JLG # _model_server_result.job_id 7PKAWaqISEkdzOUGPPJKnw _model_server_result.datetime_utc '2024-10-11 14:27:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2jlg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1665}' # _entry.id 2JLG # _exptl.entry_id 2JLG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.18 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2JLG _cell.length_a 109.026 _cell.length_b 109.026 _cell.length_c 158.835 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2JLG _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,G 1 1 B,E,H 2 1 C,F,I,J,K 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id C _struct_conn.ptnr1_label_atom_id O _struct_conn.ptnr1_label_comp_id VAL _struct_conn.ptnr1_label_seq_id 325 _struct_conn.ptnr1_auth_asym_id C _struct_conn.ptnr1_auth_comp_id VAL _struct_conn.ptnr1_auth_seq_id 325 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id K _struct_conn.ptnr2_label_atom_id MN _struct_conn.ptnr2_label_comp_id MN _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id C _struct_conn.ptnr2_auth_comp_id MN _struct_conn.ptnr2_auth_seq_id 1667 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.256 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 201 n n PG O2G GTP sing 202 n n PG O3G GTP sing 203 n n PG O3B GTP sing 204 n n O2G HOG2 GTP sing 205 n n O3G HOG3 GTP sing 206 n n O3B PB GTP sing 207 n n PB O1B GTP doub 208 n n PB O2B GTP sing 209 n n PB O3A GTP sing 210 n n O2B HOB2 GTP sing 211 n n O3A PA GTP sing 212 n n PA O1A GTP doub 213 n n PA O2A GTP sing 214 n n PA O5' GTP sing 215 n n O2A HOA2 GTP sing 216 n n O5' C5' GTP sing 217 n n C5' C4' GTP sing 218 n n C5' H5' GTP sing 219 n n C5' "H5''" GTP sing 220 n n C4' O4' GTP sing 221 n n C4' C3' GTP sing 222 n n C4' H4' GTP sing 223 n n O4' C1' GTP sing 224 n n C3' O3' GTP sing 225 n n C3' C2' GTP sing 226 n n C3' H3' GTP sing 227 n n O3' HO3' GTP sing 228 n n C2' O2' GTP sing 229 n n C2' C1' GTP sing 230 n n C2' H2' GTP sing 231 n n O2' HO2' GTP sing 232 n n C1' N9 GTP sing 233 n n C1' H1' GTP sing 234 n n N9 C8 GTP sing 235 n y N9 C4 GTP sing 236 n y C8 N7 GTP doub 237 n y C8 H8 GTP sing 238 n n N7 C5 GTP sing 239 n y C5 C6 GTP sing 240 n n C5 C4 GTP doub 241 n y C6 O6 GTP doub 242 n n C6 N1 GTP sing 243 n n N1 C2 GTP sing 244 n n N1 HN1 GTP sing 245 n n C2 N2 GTP sing 246 n n C2 N3 GTP doub 247 n n N2 HN21 GTP sing 248 n n N2 HN22 GTP sing 249 n n N3 C4 GTP sing 250 n n # _atom_sites.entry_id 2JLG _atom_sites.fract_transf_matrix[1][1] 0.009172 _atom_sites.fract_transf_matrix[1][2] 0.005296 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010591 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006296 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 GTP A 1 1665 1665 GTP GTP . H 3 GTP B 1 1665 1665 GTP GTP . I 3 GTP C 1 1665 1665 GTP GTP . J 3 GTP C 1 1666 1666 GTP GTP . K 4 MN C 1 1667 1667 MN MN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . G 3 15.875 -14.462 85.804 0.5 49.56 ? PG GTP 1665 A 1 HETATM 2 O O1G GTP . . . G 3 16.671 -15.652 85.32 0.5 40.54 ? O1G GTP 1665 A 1 HETATM 3 O O2G GTP . . . G 3 15.479 -13.571 84.645 0.5 35.72 ? O2G GTP 1665 A 1 HETATM 4 O O3G GTP . . . G 3 16.68 -13.668 86.805 0.5 29.6 ? O3G GTP 1665 A 1 HETATM 5 O O3B GTP . . . G 3 14.538 -15.014 86.492 0.5 36.16 ? O3B GTP 1665 A 1 HETATM 6 P PB GTP . . . G 3 14.546 -16.369 87.357 0.5 38.94 ? PB GTP 1665 A 1 HETATM 7 O O1B GTP . . . G 3 13.636 -17.403 86.732 0.5 40.94 ? O1B GTP 1665 A 1 HETATM 8 O O2B GTP . . . G 3 15.943 -16.904 87.548 0.5 34.23 ? O2B GTP 1665 A 1 HETATM 9 O O3A GTP . . . G 3 13.884 -15.833 88.72 0.5 45.48 ? O3A GTP 1665 A 1 HETATM 10 P PA GTP . . . G 3 12.483 -15.025 88.633 0.5 52.03 ? PA GTP 1665 A 1 HETATM 11 O O1A GTP . . . G 3 12.331 -14.308 87.311 0.5 39.55 ? O1A GTP 1665 A 1 HETATM 12 O O2A GTP . . . G 3 12.332 -14.043 89.759 0.5 35.84 ? O2A GTP 1665 A 1 HETATM 13 O O5' GTP . . . G 3 11.386 -16.176 88.821 0.5 36.96 ? O5' GTP 1665 A 1 HETATM 14 C C5' GTP . . . G 3 11.767 -17.436 89.321 0.5 39.84 ? C5' GTP 1665 A 1 HETATM 15 C C4' GTP . . . G 3 10.45 -18.168 89.429 0.5 44.82 ? C4' GTP 1665 A 1 HETATM 16 O O4' GTP . . . G 3 10.555 -19.389 90.117 0.5 44.72 ? O4' GTP 1665 A 1 HETATM 17 C C3' GTP . . . G 3 9.528 -17.318 90.272 0.5 36.41 ? C3' GTP 1665 A 1 HETATM 18 O O3' GTP . . . G 3 8.758 -16.45 89.483 0.5 34.81 ? O3' GTP 1665 A 1 HETATM 19 C C2' GTP . . . G 3 8.663 -18.296 91.021 0.5 40.68 ? C2' GTP 1665 A 1 HETATM 20 O O2' GTP . . . G 3 7.35 -18.195 90.522 0.5 34.18 ? O2' GTP 1665 A 1 HETATM 21 C C1' GTP . . . G 3 9.309 -19.65 90.736 0.5 45.73 ? C1' GTP 1665 A 1 HETATM 22 N N9 GTP . . . G 3 9.501 -20.405 91.989 0.5 52.64 ? N9 GTP 1665 A 1 HETATM 23 C C8 GTP . . . G 3 10.479 -20.273 92.944 0.5 46.44 ? C8 GTP 1665 A 1 HETATM 24 N N7 GTP . . . G 3 10.266 -21.202 93.911 0.5 39.42 ? N7 GTP 1665 A 1 HETATM 25 C C5 GTP . . . G 3 9.179 -21.942 93.573 0.5 60.6 ? C5 GTP 1665 A 1 HETATM 26 C C6 GTP . . . G 3 8.515 -23.017 94.171 0.5 54.46 ? C6 GTP 1665 A 1 HETATM 27 O O6 GTP . . . G 3 8.895 -23.5 95.245 0.5 34.42 ? O6 GTP 1665 A 1 HETATM 28 N N1 GTP . . . G 3 7.408 -23.547 93.535 0.5 57.26 ? N1 GTP 1665 A 1 HETATM 29 C C2 GTP . . . G 3 6.963 -23.028 92.333 0.5 51.23 ? C2 GTP 1665 A 1 HETATM 30 N N2 GTP . . . G 3 5.901 -23.536 91.715 0.5 59.59 ? N2 GTP 1665 A 1 HETATM 31 N N3 GTP . . . G 3 7.62 -21.974 91.755 0.5 40.45 ? N3 GTP 1665 A 1 HETATM 32 C C4 GTP . . . G 3 8.704 -21.447 92.362 0.5 53.27 ? C4 GTP 1665 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 32 #