data_2JLG # _model_server_result.job_id 7Dlvkgd3N4A2K35hfAV05w _model_server_result.datetime_utc '2024-10-11 14:28:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2jlg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1665}' # _entry.id 2JLG # _exptl.entry_id 2JLG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.18 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2JLG _cell.length_a 109.026 _cell.length_b 109.026 _cell.length_c 158.835 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2JLG _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,G 1 1 B,E,H 2 1 C,F,I,J,K 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id C _struct_conn.ptnr1_label_atom_id O _struct_conn.ptnr1_label_comp_id VAL _struct_conn.ptnr1_label_seq_id 325 _struct_conn.ptnr1_auth_asym_id C _struct_conn.ptnr1_auth_comp_id VAL _struct_conn.ptnr1_auth_seq_id 325 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id K _struct_conn.ptnr2_label_atom_id MN _struct_conn.ptnr2_label_comp_id MN _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id C _struct_conn.ptnr2_auth_comp_id MN _struct_conn.ptnr2_auth_seq_id 1667 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.256 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 201 n n PG O2G GTP sing 202 n n PG O3G GTP sing 203 n n PG O3B GTP sing 204 n n O2G HOG2 GTP sing 205 n n O3G HOG3 GTP sing 206 n n O3B PB GTP sing 207 n n PB O1B GTP doub 208 n n PB O2B GTP sing 209 n n PB O3A GTP sing 210 n n O2B HOB2 GTP sing 211 n n O3A PA GTP sing 212 n n PA O1A GTP doub 213 n n PA O2A GTP sing 214 n n PA O5' GTP sing 215 n n O2A HOA2 GTP sing 216 n n O5' C5' GTP sing 217 n n C5' C4' GTP sing 218 n n C5' H5' GTP sing 219 n n C5' "H5''" GTP sing 220 n n C4' O4' GTP sing 221 n n C4' C3' GTP sing 222 n n C4' H4' GTP sing 223 n n O4' C1' GTP sing 224 n n C3' O3' GTP sing 225 n n C3' C2' GTP sing 226 n n C3' H3' GTP sing 227 n n O3' HO3' GTP sing 228 n n C2' O2' GTP sing 229 n n C2' C1' GTP sing 230 n n C2' H2' GTP sing 231 n n O2' HO2' GTP sing 232 n n C1' N9 GTP sing 233 n n C1' H1' GTP sing 234 n n N9 C8 GTP sing 235 n y N9 C4 GTP sing 236 n y C8 N7 GTP doub 237 n y C8 H8 GTP sing 238 n n N7 C5 GTP sing 239 n y C5 C6 GTP sing 240 n n C5 C4 GTP doub 241 n y C6 O6 GTP doub 242 n n C6 N1 GTP sing 243 n n N1 C2 GTP sing 244 n n N1 HN1 GTP sing 245 n n C2 N2 GTP sing 246 n n C2 N3 GTP doub 247 n n N2 HN21 GTP sing 248 n n N2 HN22 GTP sing 249 n n N3 C4 GTP sing 250 n n # _atom_sites.entry_id 2JLG _atom_sites.fract_transf_matrix[1][1] 0.009172 _atom_sites.fract_transf_matrix[1][2] 0.005296 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010591 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006296 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 GTP A 1 1665 1665 GTP GTP . H 3 GTP B 1 1665 1665 GTP GTP . I 3 GTP C 1 1665 1665 GTP GTP . J 3 GTP C 1 1666 1666 GTP GTP . K 4 MN C 1 1667 1667 MN MN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . H 3 -3.368 42.577 92.908 0.5 40.7 ? PG GTP 1665 B 1 HETATM 2 O O1G GTP . . . H 3 -2.974 41.651 91.78 0.5 27.18 ? O1G GTP 1665 B 1 HETATM 3 O O2G GTP . . . H 3 -2.588 42.191 94.145 0.5 38.44 ? O2G GTP 1665 B 1 HETATM 4 O O3G GTP . . . H 3 -4.848 42.443 93.21 0.5 20.63 ? O3G GTP 1665 B 1 HETATM 5 O O3B GTP . . . H 3 -2.953 44.096 92.537 0.5 22.52 ? O3B GTP 1665 B 1 HETATM 6 P PB GTP . . . H 3 -1.382 44.396 92.448 0.5 14.22 ? PB GTP 1665 B 1 HETATM 7 O O1B GTP . . . H 3 -0.737 43.371 91.547 0.5 21.58 ? O1B GTP 1665 B 1 HETATM 8 O O2B GTP . . . H 3 -0.781 44.333 93.825 0.5 28.23 ? O2B GTP 1665 B 1 HETATM 9 O O3A GTP . . . H 3 -1.139 45.869 91.844 0.5 28.49 ? O3A GTP 1665 B 1 HETATM 10 P PA GTP . . . H 3 0.285 46.551 92.184 0.5 26.85 ? PA GTP 1665 B 1 HETATM 11 O O1A GTP . . . H 3 0.43 47.977 91.705 0.5 13.11 ? O1A GTP 1665 B 1 HETATM 12 O O2A GTP . . . H 3 0.541 46.426 93.667 0.5 32.36 ? O2A GTP 1665 B 1 HETATM 13 O O5' GTP . . . H 3 1.275 45.531 91.424 0.5 30.82 ? O5' GTP 1665 B 1 HETATM 14 C C5' GTP . . . H 3 2.669 45.556 91.584 0.5 23.73 ? C5' GTP 1665 B 1 HETATM 15 C C4' GTP . . . H 3 3.052 44.121 91.933 0.5 40.18 ? C4' GTP 1665 B 1 HETATM 16 O O4' GTP . . . H 3 3.168 43.284 90.79 0.5 49.94 ? O4' GTP 1665 B 1 HETATM 17 C C3' GTP . . . H 3 4.362 44.075 92.696 0.5 44.39 ? C3' GTP 1665 B 1 HETATM 18 O O3' GTP . . . H 3 4.14 43.518 93.97 0.5 29.31 ? O3' GTP 1665 B 1 HETATM 19 C C2' GTP . . . H 3 5.269 43.181 91.874 0.5 43.83 ? C2' GTP 1665 B 1 HETATM 20 O O2' GTP . . . H 3 5.996 42.266 92.656 0.5 40.18 ? O2' GTP 1665 B 1 HETATM 21 C C1' GTP . . . H 3 4.327 42.473 90.918 0.5 50.49 ? C1' GTP 1665 B 1 HETATM 22 N N9 GTP . . . H 3 5.022 42.294 89.634 0.5 54.04 ? N9 GTP 1665 B 1 HETATM 23 C C8 GTP . . . H 3 6.363 42.485 89.436 0.5 47.64 ? C8 GTP 1665 B 1 HETATM 24 N N7 GTP . . . H 3 6.641 42.217 88.142 0.5 63.73 ? N7 GTP 1665 B 1 HETATM 25 C C5 GTP . . . H 3 5.507 41.832 87.514 0.5 67.68 ? C5 GTP 1665 B 1 HETATM 26 C C6 GTP . . . H 3 5.25 41.443 86.202 0.5 58.19 ? C6 GTP 1665 B 1 HETATM 27 O O6 GTP . . . H 3 6.144 41.401 85.362 0.5 44.1 ? O6 GTP 1665 B 1 HETATM 28 N N1 GTP . . . H 3 3.968 41.1 85.845 0.5 66.97 ? N1 GTP 1665 B 1 HETATM 29 C C2 GTP . . . H 3 2.964 41.147 86.787 0.5 51.65 ? C2 GTP 1665 B 1 HETATM 30 N N2 GTP . . . H 3 1.745 40.811 86.424 0.5 37.74 ? N2 GTP 1665 B 1 HETATM 31 N N3 GTP . . . H 3 3.216 41.532 88.086 0.5 45.51 ? N3 GTP 1665 B 1 HETATM 32 C C4 GTP . . . H 3 4.476 41.87 88.447 0.5 55.27 ? C4 GTP 1665 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 32 #