data_2K3M # _model_server_result.job_id DOZ58cwiS99P_WtBUcckhw _model_server_result.datetime_utc '2024-12-05 18:41:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2k3m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":130}' # _entry.id 2K3M # _exptl.entry_id 2K3M _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 264.385 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'S-[(1-oxyl-2,2,5,5-tetramethyl-2,5-dihydro-1H-pyrrol-3-yl)methyl] methanesulfonothioate' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2K3M _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2K3M _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 54 A CYS 30 1_555 B S1 MTN . A MTN 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? covale ? covale2 A SG CYS 72 A CYS 48 1_555 C S1 MTN . A MTN 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? covale ? covale3 A SG CYS 126 A CYS 102 1_555 D S1 MTN . A MTN 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? # _chem_comp.formula 'C10 H18 N O3 S2' _chem_comp.formula_weight 264.385 _chem_comp.id MTN _chem_comp.mon_nstd_flag . _chem_comp.name 'S-[(1-oxyl-2,2,5,5-tetramethyl-2,5-dihydro-1H-pyrrol-3-yl)methyl] methanesulfonothioate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms MTSL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 N1 MTN sing 235 n n N1 C1 MTN sing 236 n n N1 C5 MTN sing 237 n n C1 C2 MTN sing 238 n n C1 C8 MTN sing 239 n n C1 C9 MTN sing 240 n n C2 C3 MTN doub 241 n n C2 H2 MTN sing 242 n n C3 C4 MTN sing 243 n n C3 C5 MTN sing 244 n n C4 S1 MTN sing 245 n n C4 H41 MTN sing 246 n n C4 H42 MTN sing 247 n n C5 C6 MTN sing 248 n n C5 C7 MTN sing 249 n n C6 H61 MTN sing 250 n n C6 H62 MTN sing 251 n n C6 H63 MTN sing 252 n n C7 H71 MTN sing 253 n n C7 H72 MTN sing 254 n n C7 H73 MTN sing 255 n n C8 H81 MTN sing 256 n n C8 H82 MTN sing 257 n n C8 H83 MTN sing 258 n n C9 H91 MTN sing 259 n n C9 H92 MTN sing 260 n n C9 H93 MTN sing 261 n n S1 S2 MTN sing 262 n n S2 O2 MTN doub 263 n n S2 O3 MTN doub 264 n n S2 C12 MTN sing 265 n n C12 H4 MTN sing 266 n n C12 H1 MTN sing 267 n n C12 H3 MTN sing 268 n n # _atom_sites.entry_id 2K3M _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MTN A 1 128 128 MTN MTN . C 2 MTN A 1 129 129 MTN MTN . D 2 MTN A 1 130 130 MTN MTN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 MTN . . . D 2 82.299 -10.353 4.867 1 1 ? O1 MTN 130 A 1 HETATM 2 N N1 MTN . . . D 2 81.647 -9.282 5.047 1 1 ? N1 MTN 130 A 1 HETATM 3 C C1 MTN . . . D 2 80.739 -9.077 6.199 1 1 ? C1 MTN 130 A 1 HETATM 4 C C2 MTN . . . D 2 80.274 -7.698 5.91 1 1 ? C2 MTN 130 A 1 HETATM 5 C C3 MTN . . . D 2 80.794 -7.179 4.811 1 1 ? C3 MTN 130 A 1 HETATM 6 C C4 MTN . . . D 2 80.514 -5.808 4.294 1 1 ? C4 MTN 130 A 1 HETATM 7 S S1 MTN . . . D 2 81.69 -4.577 4.883 1 1 ? S1 MTN 130 A 1 HETATM 8 C C5 MTN . . . D 2 81.741 -8.13 4.113 1 1 ? C5 MTN 130 A 1 HETATM 9 C C6 MTN . . . D 2 81.335 -8.434 2.676 1 1 ? C6 MTN 130 A 1 HETATM 10 C C7 MTN . . . D 2 83.166 -7.585 4.174 1 1 ? C7 MTN 130 A 1 HETATM 11 C C8 MTN . . . D 2 79.58 -10.073 6.233 1 1 ? C8 MTN 130 A 1 HETATM 12 C C9 MTN . . . D 2 81.534 -9.114 7.496 1 1 ? C9 MTN 130 A 1 HETATM 13 H H2 MTN . . . D 2 79.576 -7.167 6.54 1 1 ? H2 MTN 130 A 1 HETATM 14 H H41 MTN . . . D 2 79.525 -5.517 4.608 1 1 ? H41 MTN 130 A 1 HETATM 15 H H42 MTN . . . D 2 80.549 -5.849 3.211 1 1 ? H42 MTN 130 A 1 HETATM 16 H H61 MTN . . . D 2 81.578 -7.593 2.042 1 1 ? H61 MTN 130 A 1 HETATM 17 H H62 MTN . . . D 2 80.271 -8.618 2.634 1 1 ? H62 MTN 130 A 1 HETATM 18 H H63 MTN . . . D 2 81.863 -9.309 2.33 1 1 ? H63 MTN 130 A 1 HETATM 19 H H71 MTN . . . D 2 83.203 -6.616 3.7 1 1 ? H71 MTN 130 A 1 HETATM 20 H H72 MTN . . . D 2 83.832 -8.264 3.663 1 1 ? H72 MTN 130 A 1 HETATM 21 H H73 MTN . . . D 2 83.472 -7.492 5.207 1 1 ? H73 MTN 130 A 1 HETATM 22 H H81 MTN . . . D 2 79.966 -11.072 6.378 1 1 ? H81 MTN 130 A 1 HETATM 23 H H82 MTN . . . D 2 79.041 -10.028 5.299 1 1 ? H82 MTN 130 A 1 HETATM 24 H H83 MTN . . . D 2 78.914 -9.824 7.046 1 1 ? H83 MTN 130 A 1 HETATM 25 H H91 MTN . . . D 2 80.947 -8.68 8.293 1 1 ? H91 MTN 130 A 1 HETATM 26 H H92 MTN . . . D 2 82.448 -8.551 7.376 1 1 ? H92 MTN 130 A 1 HETATM 27 H H93 MTN . . . D 2 81.774 -10.137 7.744 1 1 ? H93 MTN 130 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 64 _model_server_stats.query_time_ms 9845 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 27 #