data_2K4L # _model_server_result.job_id 5VVPEDVuOfl0GtlnRt4F9Q _model_server_result.datetime_utc '2025-03-03 00:47:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2k4l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":101}' # _entry.id 2K4L # _exptl.entry_id 2K4L _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 386.443 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (11aS)-7,8-dimethoxy-2-naphthalen-2-yl-1,10,11,11a-tetrahydro-5H-pyrrolo[2,1-c][1,4]benzodiazepin-5-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2K4L _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2K4L _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A N2 DG 11 A DG 11 1_555 C C9A PZD . A PZD 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale2 B N2 DG 11 B DG 31 1_555 D C9A PZD . B PZD 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? hydrog WATSON-CRICK hydrog1 A N1 DA 1 A DA 1 1_555 B N3 DT 14 B DT 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N6 DA 1 A DA 1 1_555 B O4 DT 14 B DT 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A N1 DA 2 A DA 2 1_555 B N3 DT 13 B DT 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N6 DA 2 A DA 2 1_555 B O4 DT 13 B DT 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N3 DT 3 A DT 3 1_555 B N1 DA 12 B DA 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O4 DT 3 A DT 3 1_555 B N6 DA 12 B DA 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N3 DC 4 A DC 4 1_555 B N1 DG 11 B DG 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N4 DC 4 A DC 4 1_555 B O6 DG 11 B DG 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A O2 DC 4 A DC 4 1_555 B N2 DG 11 B DG 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N3 DT 5 A DT 5 1_555 B N1 DA 10 B DA 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A O4 DT 5 A DT 5 1_555 B N6 DA 10 B DA 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N3 DT 6 A DT 6 1_555 B N1 DA 9 B DA 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A O4 DT 6 A DT 6 1_555 B N6 DA 9 B DA 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N3 DT 7 A DT 7 1_555 B N1 DA 8 B DA 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A O4 DT 7 A DT 7 1_555 B N6 DA 8 B DA 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N1 DA 8 A DA 8 1_555 B N3 DT 7 B DT 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N6 DA 8 A DA 8 1_555 B O4 DT 7 B DT 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N1 DA 9 A DA 9 1_555 B N3 DT 6 B DT 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N6 DA 9 A DA 9 1_555 B O4 DT 6 B DT 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A N1 DA 10 A DA 10 1_555 B N3 DT 5 B DT 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A N6 DA 10 A DA 10 1_555 B O4 DT 5 B DT 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A N1 DG 11 A DG 11 1_555 B N3 DC 4 B DC 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A N2 DG 11 A DG 11 1_555 B O2 DC 4 B DC 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A O6 DG 11 A DG 11 1_555 B N4 DC 4 B DC 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A N1 DA 12 A DA 12 1_555 B N3 DT 3 B DT 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A N6 DA 12 A DA 12 1_555 B O4 DT 3 B DT 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 A N3 DT 13 A DT 13 1_555 B N1 DA 2 B DA 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 A O4 DT 13 A DT 13 1_555 B N6 DA 2 B DA 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DT-DT MISPAIR' hydrog29 A N3 DT 13 A DT 13 1_555 B O2 DT 3 B DT 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 A N3 DT 14 A DT 14 1_555 B N1 DA 1 B DA 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 A O4 DT 14 A DT 14 1_555 B N6 DA 1 B DA 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DT-DA PAIR' hydrog32 A N3 DT 14 A DT 14 1_555 B N1 DA 2 B DA 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C24 H22 N2 O3' _chem_comp.formula_weight 386.443 _chem_comp.id PZD _chem_comp.mon_nstd_flag . _chem_comp.name (11aS)-7,8-dimethoxy-2-naphthalen-2-yl-1,10,11,11a-tetrahydro-5H-pyrrolo[2,1-c][1,4]benzodiazepin-5-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O3A C1A PZD sing 150 n n C6A C1A PZD doub 151 n y C1A C2A PZD sing 152 n y C2A O2A PZD sing 153 n n C2A C3A PZD doub 154 n y C4A C3A PZD sing 155 n y C3A H3A PZD sing 156 n n C5A C4A PZD doub 157 n y C4A C7A PZD sing 158 n n C6A C5A PZD sing 159 n y N2A C5A PZD sing 160 n n H6A C6A PZD sing 161 n n N1A C7A PZD sing 162 n n C7A O1A PZD doub 163 n n C8A N1A PZD sing 164 n n N1A C10 PZD sing 165 n n C9A C8A PZD sing 166 n n H8A C8A PZD sing 167 n n C12 C8A PZD sing 168 n n C11 C10 PZD doub 169 n n C10 H10 PZD sing 170 n n C12 C11 PZD sing 171 n n C11 C20 PZD sing 172 n n H12A C12 PZD sing 173 n n H12 C12 PZD sing 174 n n C18 C13 PZD doub 175 n y C19 C13 PZD sing 176 n y C13 C14 PZD sing 177 n y C14 C15 PZD doub 178 n y C14 C22 PZD sing 179 n y C16 C15 PZD sing 180 n y C15 H15 PZD sing 181 n n C17 C16 PZD doub 182 n y C16 H16 PZD sing 183 n n H17 C17 PZD sing 184 n n C18 C17 PZD sing 185 n y H18 C18 PZD sing 186 n n H19 C19 PZD sing 187 n n C19 C20 PZD doub 188 n y C20 C21 PZD sing 189 n y C21 C22 PZD doub 190 n y C21 H21 PZD sing 191 n n C22 H22 PZD sing 192 n n O2A C23 PZD sing 193 n n H23B C23 PZD sing 194 n n C23 H23 PZD sing 195 n n C23 H23A PZD sing 196 n n C24 O3A PZD sing 197 n n H24A C24 PZD sing 198 n n C24 H24 PZD sing 199 n n C24 H24B PZD sing 200 n n H9A C9A PZD sing 201 n n C9A N2A PZD sing 202 n n C9A H9AA PZD sing 203 n n HN2A N2A PZD sing 204 n n # _atom_sites.entry_id 2K4L _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PZD A 1 101 101 PZD PZD . D 2 PZD B 1 102 102 PZD PZD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1A PZD . . . C 2 7.658 35.583 -8.087 1 0 ? C1A PZD 101 A 1 HETATM 2 C C2A PZD . . . C 2 8.153 35.21 -6.835 1 0 ? C2A PZD 101 A 1 HETATM 3 C C3A PZD . . . C 2 7.519 34.209 -6.141 1 0 ? C3A PZD 101 A 1 HETATM 4 C C4A PZD . . . C 2 6.388 33.557 -6.659 1 0 ? C4A PZD 101 A 1 HETATM 5 C C5A PZD . . . C 2 5.911 33.945 -7.904 1 0 ? C5A PZD 101 A 1 HETATM 6 C C6A PZD . . . C 2 6.56 34.953 -8.594 1 0 ? C6A PZD 101 A 1 HETATM 7 C C7A PZD . . . C 2 5.771 32.477 -5.827 1 0 ? C7A PZD 101 A 1 HETATM 8 N N1A PZD . . . C 2 4.98 31.54 -6.468 1 0 ? N1A PZD 101 A 1 HETATM 9 C C8A PZD . . . C 2 5.058 31.082 -7.874 1 0 ? C8A PZD 101 A 1 HETATM 10 C C10 PZD . . . C 2 3.957 30.815 -5.824 1 0 ? C10 PZD 101 A 1 HETATM 11 C C11 PZD . . . C 2 3.596 29.743 -6.522 1 0 ? C11 PZD 101 A 1 HETATM 12 C C12 PZD . . . C 2 4.224 29.799 -7.902 1 0 ? C12 PZD 101 A 1 HETATM 13 O O1A PZD . . . C 2 5.951 32.42 -4.616 1 0 ? O1A PZD 101 A 1 HETATM 14 C C13 PZD . . . C 2 1.848 26.413 -6.608 1 0 ? C13 PZD 101 A 1 HETATM 15 C C14 PZD . . . C 2 1.155 26.414 -5.368 1 0 ? C14 PZD 101 A 1 HETATM 16 C C15 PZD . . . C 2 0.357 25.291 -5.016 1 0 ? C15 PZD 101 A 1 HETATM 17 C C16 PZD . . . C 2 0.253 24.22 -5.856 1 0 ? C16 PZD 101 A 1 HETATM 18 C C17 PZD . . . C 2 0.944 24.215 -7.096 1 0 ? C17 PZD 101 A 1 HETATM 19 C C18 PZD . . . C 2 1.718 25.278 -7.462 1 0 ? C18 PZD 101 A 1 HETATM 20 C C19 PZD . . . C 2 2.646 27.544 -6.957 1 0 ? C19 PZD 101 A 1 HETATM 21 C C20 PZD . . . C 2 2.759 28.622 -6.124 1 0 ? C20 PZD 101 A 1 HETATM 22 C C21 PZD . . . C 2 2.056 28.61 -4.874 1 0 ? C21 PZD 101 A 1 HETATM 23 C C22 PZD . . . C 2 1.288 27.55 -4.515 1 0 ? C22 PZD 101 A 1 HETATM 24 O O2A PZD . . . C 2 9.166 35.906 -6.25 1 0 ? O2A PZD 101 A 1 HETATM 25 C C23 PZD . . . C 2 8.76 37.178 -5.702 1 0 ? C23 PZD 101 A 1 HETATM 26 O O3A PZD . . . C 2 8.275 36.62 -8.712 1 0 ? O3A PZD 101 A 1 HETATM 27 C C24 PZD . . . C 2 7.481 37.595 -9.4 1 0 ? C24 PZD 101 A 1 HETATM 28 C C9A PZD . . . C 2 4.498 32.118 -8.842 1 0 ? C9A PZD 101 A 1 HETATM 29 N N2A PZD . . . C 2 4.741 33.448 -8.441 1 0 ? N2A PZD 101 A 1 HETATM 30 H H8A PZD . . . C 2 6.068 30.871 -8.154 1 0 ? H8A PZD 101 A 1 HETATM 31 H H24 PZD . . . C 2 7.566 37.464 -10.474 1 0 ? H24 PZD 101 A 1 HETATM 32 H H24A PZD . . . C 2 6.437 37.504 -9.115 1 0 ? H24A PZD 101 A 1 HETATM 33 H H24B PZD . . . C 2 7.866 38.556 -9.106 1 0 ? H24B PZD 101 A 1 HETATM 34 H H23 PZD . . . C 2 8.202 37.01 -4.786 1 0 ? H23 PZD 101 A 1 HETATM 35 H H23A PZD . . . C 2 8.151 37.716 -6.428 1 0 ? H23A PZD 101 A 1 HETATM 36 H H23B PZD . . . C 2 9.668 37.714 -5.485 1 0 ? H23B PZD 101 A 1 HETATM 37 H H3A PZD . . . C 2 7.902 33.929 -5.185 1 0 ? H3A PZD 101 A 1 HETATM 38 H H6A PZD . . . C 2 6.173 35.231 -9.547 1 0 ? H6A PZD 101 A 1 HETATM 39 H H16 PZD . . . C 2 -0.349 23.376 -5.585 1 0 ? H16 PZD 101 A 1 HETATM 40 H H22 PZD . . . C 2 0.767 27.555 -3.577 1 0 ? H22 PZD 101 A 1 HETATM 41 H H15 PZD . . . C 2 -0.163 25.301 -4.079 1 0 ? H15 PZD 101 A 1 HETATM 42 H H17 PZD . . . C 2 0.853 23.365 -7.744 1 0 ? H17 PZD 101 A 1 HETATM 43 H H18 PZD . . . C 2 2.257 25.261 -8.387 1 0 ? H18 PZD 101 A 1 HETATM 44 H H21 PZD . . . C 2 2.141 29.452 -4.217 1 0 ? H21 PZD 101 A 1 HETATM 45 H H19 PZD . . . C 2 3.146 27.556 -7.922 1 0 ? H19 PZD 101 A 1 HETATM 46 H H10 PZD . . . C 2 3.6 31.182 -4.89 1 0 ? H10 PZD 101 A 1 HETATM 47 H H12 PZD . . . C 2 3.507 29.817 -8.707 1 0 ? H12 PZD 101 A 1 HETATM 48 H H12A PZD . . . C 2 4.883 28.937 -8.031 1 0 ? H12A PZD 101 A 1 HETATM 49 H HN2A PZD . . . C 2 4.004 34.107 -8.564 1 0 ? HN2A PZD 101 A 1 HETATM 50 H H9AA PZD . . . C 2 3.419 32.008 -8.891 1 0 ? H9AA PZD 101 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 3062 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 50 #