data_2KAU # _model_server_result.job_id fuOVP6RjNp-caIODbOa2pw _model_server_result.datetime_utc '2025-08-31 01:34:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2kau # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":775}' # _entry.id 2KAU # _exptl.entry_id 2KAU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2KAU _cell.length_a 170.8 _cell.length_b 170.8 _cell.length_c 170.8 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2KAU _symmetry.cell_setting ? _symmetry.Int_Tables_number 199 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 21 3' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details nonameric _pdbx_struct_assembly.oligomeric_count 9 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 3 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C LEU 216 C LEU 216 1_555 C N KCX 217 C KCX 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale2 C C KCX 217 C KCX 217 1_555 C N ILE 218 C ILE 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? metalc ? metalc1 C NE2 HIS 134 C HIS 134 1_555 E NI NI . C NI 775 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc2 C NE2 HIS 136 C HIS 136 1_555 E NI NI . C NI 775 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc3 C OQ2 KCX 217 C KCX 217 1_555 D NI NI . C NI 774 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc4 C OQ1 KCX 217 C KCX 217 1_555 E NI NI . C NI 775 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc5 C ND1 HIS 246 C HIS 246 1_555 D NI NI . C NI 774 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? metalc ? metalc6 C NE2 HIS 272 C HIS 272 1_555 D NI NI . C NI 774 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc7 C OD1 ASP 360 C ASP 360 1_555 E NI NI . C NI 775 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2KAU _atom_sites.fract_transf_matrix[1][1] 0.005855 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005855 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005855 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NI C 1 774 774 NI NI . E 4 NI C 1 775 775 NI NI . F 5 HOH A 1 101 3 HOH HOH . F 5 HOH A 2 102 19 HOH HOH . F 5 HOH A 3 103 20 HOH HOH . F 5 HOH A 4 104 21 HOH HOH . F 5 HOH A 5 105 59 HOH HOH . F 5 HOH A 6 106 74 HOH HOH . F 5 HOH A 7 107 84 HOH HOH . F 5 HOH A 8 108 85 HOH HOH . F 5 HOH A 9 109 95 HOH HOH . F 5 HOH A 10 110 97 HOH HOH . F 5 HOH A 11 111 102 HOH HOH . F 5 HOH A 12 112 103 HOH HOH . F 5 HOH A 13 113 120 HOH HOH . F 5 HOH A 14 114 139 HOH HOH . F 5 HOH A 15 115 150 HOH HOH . F 5 HOH A 16 116 172 HOH HOH . F 5 HOH A 17 117 173 HOH HOH . F 5 HOH A 18 118 178 HOH HOH . F 5 HOH A 19 119 184 HOH HOH . F 5 HOH A 20 120 200 HOH HOH . F 5 HOH A 21 121 202 HOH HOH . F 5 HOH A 22 122 207 HOH HOH . G 5 HOH B 1 107 71 HOH HOH . G 5 HOH B 2 108 77 HOH HOH . G 5 HOH B 3 109 109 HOH HOH . G 5 HOH B 4 110 122 HOH HOH . G 5 HOH B 5 111 126 HOH HOH . G 5 HOH B 6 112 132 HOH HOH . G 5 HOH B 7 113 134 HOH HOH . G 5 HOH B 8 114 136 HOH HOH . G 5 HOH B 9 115 145 HOH HOH . G 5 HOH B 10 116 146 HOH HOH . G 5 HOH B 11 117 166 HOH HOH . G 5 HOH B 12 118 167 HOH HOH . G 5 HOH B 13 119 174 HOH HOH . G 5 HOH B 14 120 188 HOH HOH . G 5 HOH B 15 121 198 HOH HOH . G 5 HOH B 16 122 211 HOH HOH . G 5 HOH B 17 123 212 HOH HOH . H 5 HOH C 1 777 1 HOH HOH . H 5 HOH C 2 778 2 HOH HOH . H 5 HOH C 3 779 4 HOH HOH . H 5 HOH C 4 780 5 HOH HOH . H 5 HOH C 5 781 6 HOH HOH . H 5 HOH C 6 782 7 HOH HOH . H 5 HOH C 7 783 8 HOH HOH . H 5 HOH C 8 784 9 HOH HOH . H 5 HOH C 9 785 10 HOH HOH . H 5 HOH C 10 786 11 HOH HOH . H 5 HOH C 11 787 12 HOH HOH . H 5 HOH C 12 788 13 HOH HOH . H 5 HOH C 13 789 14 HOH HOH . H 5 HOH C 14 790 15 HOH HOH . H 5 HOH C 15 791 16 HOH HOH . H 5 HOH C 16 792 17 HOH HOH . H 5 HOH C 17 793 18 HOH HOH . H 5 HOH C 18 794 22 HOH HOH . H 5 HOH C 19 795 23 HOH HOH . H 5 HOH C 20 796 24 HOH HOH . H 5 HOH C 21 797 25 HOH HOH . H 5 HOH C 22 798 26 HOH HOH . H 5 HOH C 23 799 27 HOH HOH . H 5 HOH C 24 800 28 HOH HOH . H 5 HOH C 25 801 29 HOH HOH . H 5 HOH C 26 802 30 HOH HOH . H 5 HOH C 27 803 31 HOH HOH . H 5 HOH C 28 804 32 HOH HOH . H 5 HOH C 29 805 33 HOH HOH . H 5 HOH C 30 806 34 HOH HOH . H 5 HOH C 31 807 35 HOH HOH . H 5 HOH C 32 808 36 HOH HOH . H 5 HOH C 33 809 37 HOH HOH . H 5 HOH C 34 810 38 HOH HOH . H 5 HOH C 35 811 39 HOH HOH . H 5 HOH C 36 812 40 HOH HOH . H 5 HOH C 37 813 41 HOH HOH . H 5 HOH C 38 814 42 HOH HOH . H 5 HOH C 39 815 43 HOH HOH . H 5 HOH C 40 816 44 HOH HOH . H 5 HOH C 41 817 45 HOH HOH . H 5 HOH C 42 818 46 HOH HOH . H 5 HOH C 43 819 47 HOH HOH . H 5 HOH C 44 820 48 HOH HOH . H 5 HOH C 45 821 49 HOH HOH . H 5 HOH C 46 822 50 HOH HOH . H 5 HOH C 47 823 51 HOH HOH . H 5 HOH C 48 824 52 HOH HOH . H 5 HOH C 49 825 53 HOH HOH . H 5 HOH C 50 826 54 HOH HOH . H 5 HOH C 51 827 55 HOH HOH . H 5 HOH C 52 828 56 HOH HOH . H 5 HOH C 53 829 57 HOH HOH . H 5 HOH C 54 830 58 HOH HOH . H 5 HOH C 55 831 60 HOH HOH . H 5 HOH C 56 832 61 HOH HOH . H 5 HOH C 57 833 62 HOH HOH . H 5 HOH C 58 834 63 HOH HOH . H 5 HOH C 59 835 64 HOH HOH . H 5 HOH C 60 836 65 HOH HOH . H 5 HOH C 61 837 66 HOH HOH . H 5 HOH C 62 838 67 HOH HOH . H 5 HOH C 63 839 68 HOH HOH . H 5 HOH C 64 840 69 HOH HOH . H 5 HOH C 65 841 70 HOH HOH . H 5 HOH C 66 842 72 HOH HOH . H 5 HOH C 67 843 73 HOH HOH . H 5 HOH C 68 844 75 HOH HOH . H 5 HOH C 69 845 76 HOH HOH . H 5 HOH C 70 846 78 HOH HOH . H 5 HOH C 71 847 79 HOH HOH . H 5 HOH C 72 848 80 HOH HOH . H 5 HOH C 73 849 81 HOH HOH . H 5 HOH C 74 850 82 HOH HOH . H 5 HOH C 75 851 83 HOH HOH . H 5 HOH C 76 852 86 HOH HOH . H 5 HOH C 77 853 87 HOH HOH . H 5 HOH C 78 854 88 HOH HOH . H 5 HOH C 79 855 89 HOH HOH . H 5 HOH C 80 856 90 HOH HOH . H 5 HOH C 81 857 91 HOH HOH . H 5 HOH C 82 858 92 HOH HOH . H 5 HOH C 83 859 93 HOH HOH . H 5 HOH C 84 860 94 HOH HOH . H 5 HOH C 85 861 96 HOH HOH . H 5 HOH C 86 862 98 HOH HOH . H 5 HOH C 87 863 99 HOH HOH . H 5 HOH C 88 864 100 HOH HOH . H 5 HOH C 89 865 101 HOH HOH . H 5 HOH C 90 866 104 HOH HOH . H 5 HOH C 91 867 105 HOH HOH . H 5 HOH C 92 868 106 HOH HOH . H 5 HOH C 93 869 107 HOH HOH . H 5 HOH C 94 870 108 HOH HOH . H 5 HOH C 95 871 110 HOH HOH . H 5 HOH C 96 872 111 HOH HOH . H 5 HOH C 97 873 112 HOH HOH . H 5 HOH C 98 874 113 HOH HOH . H 5 HOH C 99 875 114 HOH HOH . H 5 HOH C 100 876 115 HOH HOH . H 5 HOH C 101 877 116 HOH HOH . H 5 HOH C 102 878 117 HOH HOH . H 5 HOH C 103 879 118 HOH HOH . H 5 HOH C 104 880 119 HOH HOH . H 5 HOH C 105 881 121 HOH HOH . H 5 HOH C 106 882 123 HOH HOH . H 5 HOH C 107 883 124 HOH HOH . H 5 HOH C 108 884 125 HOH HOH . H 5 HOH C 109 885 127 HOH HOH . H 5 HOH C 110 886 128 HOH HOH . H 5 HOH C 111 887 129 HOH HOH . H 5 HOH C 112 888 130 HOH HOH . H 5 HOH C 113 889 131 HOH HOH . H 5 HOH C 114 890 133 HOH HOH . H 5 HOH C 115 891 135 HOH HOH . H 5 HOH C 116 892 137 HOH HOH . H 5 HOH C 117 893 138 HOH HOH . H 5 HOH C 118 894 140 HOH HOH . H 5 HOH C 119 895 141 HOH HOH . H 5 HOH C 120 896 142 HOH HOH . H 5 HOH C 121 897 143 HOH HOH . H 5 HOH C 122 898 144 HOH HOH . H 5 HOH C 123 899 147 HOH HOH . H 5 HOH C 124 900 148 HOH HOH . H 5 HOH C 125 901 149 HOH HOH . H 5 HOH C 126 902 151 HOH HOH . H 5 HOH C 127 903 152 HOH HOH . H 5 HOH C 128 904 153 HOH HOH . H 5 HOH C 129 905 154 HOH HOH . H 5 HOH C 130 906 155 HOH HOH . H 5 HOH C 131 907 156 HOH HOH . H 5 HOH C 132 908 157 HOH HOH . H 5 HOH C 133 909 158 HOH HOH . H 5 HOH C 134 910 159 HOH HOH . H 5 HOH C 135 911 160 HOH HOH . H 5 HOH C 136 912 161 HOH HOH . H 5 HOH C 137 913 162 HOH HOH . H 5 HOH C 138 914 163 HOH HOH . H 5 HOH C 139 915 164 HOH HOH . H 5 HOH C 140 916 165 HOH HOH . H 5 HOH C 141 917 169 HOH HOH . H 5 HOH C 142 918 170 HOH HOH . H 5 HOH C 143 919 171 HOH HOH . H 5 HOH C 144 920 175 HOH HOH . H 5 HOH C 145 921 176 HOH HOH . H 5 HOH C 146 922 177 HOH HOH . H 5 HOH C 147 923 179 HOH HOH . H 5 HOH C 148 924 180 HOH HOH . H 5 HOH C 149 925 181 HOH HOH . H 5 HOH C 150 926 182 HOH HOH . H 5 HOH C 151 927 183 HOH HOH . H 5 HOH C 152 928 185 HOH HOH . H 5 HOH C 153 929 186 HOH HOH . H 5 HOH C 154 930 187 HOH HOH . H 5 HOH C 155 931 189 HOH HOH . H 5 HOH C 156 932 190 HOH HOH . H 5 HOH C 157 933 191 HOH HOH . H 5 HOH C 158 934 192 HOH HOH . H 5 HOH C 159 935 193 HOH HOH . H 5 HOH C 160 936 194 HOH HOH . H 5 HOH C 161 937 195 HOH HOH . H 5 HOH C 162 938 196 HOH HOH . H 5 HOH C 163 939 197 HOH HOH . H 5 HOH C 164 940 199 HOH HOH . H 5 HOH C 165 941 201 HOH HOH . H 5 HOH C 166 942 203 HOH HOH . H 5 HOH C 167 943 204 HOH HOH . H 5 HOH C 168 944 205 HOH HOH . H 5 HOH C 169 945 206 HOH HOH . H 5 HOH C 170 946 209 HOH HOH . H 5 HOH C 171 947 210 HOH HOH . H 5 HOH C 172 948 213 HOH HOH . H 5 HOH C 173 949 214 HOH HOH . H 5 HOH C 174 950 215 HOH HOH . H 5 HOH C 175 951 216 HOH HOH . H 5 HOH C 176 952 217 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 4 _atom_site.Cartn_x 68.105 _atom_site.Cartn_y 104.61 _atom_site.Cartn_z 72.376 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 14.74 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 775 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 367 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #